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Clc09G13426 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G13426
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCCHC-type domain-containing protein
Genome locationClcChr09:13923261..13923611
RNA-Seq ExpressionClc09G13426
SyntenyClc09G13426
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]5.8e-1840.95Show/hide
Query:  MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLLDQKGLEDENRNWQFDSW
        M+  LG A+G F +V+ N +N  WG  LR+++  D+ KPL +GI ++  G  G  WI  +YERLP+F Y C R+ H +KD       ++  ++N Q+  W
Subjt:  MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLLDQKGLEDENRNWQFDSW

Query:  LRFQG
        LRFQG
Subjt:  LRFQG

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]2.3e-2248.11Show/hide
Query:  MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLLDQKGLEDENR-NWQFDS
        M+  LG A+G F++VDCN+   SWG SLRI++L+DI+KPLR+GI I+  G  G  WI  +YERLP+FCY C  IGH+  D        +D++R   ++  
Subjt:  MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLLDQKGLEDENR-NWQFDS

Query:  WLRFQG
        WLRF G
Subjt:  WLRFQG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]4.4e-1842.86Show/hide
Query:  MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLLDQKGLEDENRNWQFDSW
        M+  LG A+G F E DC+  N  WG +LR+++++DISKPLR+GI ++  G  G  WI  +YERLP+FCY C               GL    +  Q+ SW
Subjt:  MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLLDQKGLEDENRNWQFDSW

Query:  LRFQG
        LR+QG
Subjt:  LRFQG

XP_024642377.1 uncharacterized protein LOC112422874 [Medicago truncatula]5.4e-1644.86Show/hide
Query:  MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIK----DSLLDQKGLED-ENRNW
        M+R LG+ VG+FLEVD    N+  G S+RIK+ +D+  PL++GI +     + + WI FKYERLPNFCY C RIGH +K    ++  D +G  D E ++ 
Subjt:  MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIK----DSLLDQKGLED-ENRNW

Query:  QFDSWLR
         + SW+R
Subjt:  QFDSWLR

XP_042958115.1 uncharacterized protein LOC122293643 [Carya illinoinensis]4.2e-1642.86Show/hide
Query:  LGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLL---DQKGLEDEN
        +G ++G   E+D  +D V+WG+ ++I+IL+D++KPL +G  I+  GN G+ W++F YERLP FCY C R+GH+ KD  +   DQ   +++N
Subjt:  LGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLL---DQKGLEDEN

TrEMBL top hitse value%identityAlignment
A0A6J1BSZ1 uncharacterized protein LOC1110054812.8e-1840.95Show/hide
Query:  MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLLDQKGLEDENRNWQFDSW
        M+  LG A+G F +V+ N +N  WG  LR+++  D+ KPL +GI ++  G  G  WI  +YERLP+F Y C R+ H +KD       ++  ++N Q+  W
Subjt:  MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLLDQKGLEDENRNWQFDSW

Query:  LRFQG
        LRFQG
Subjt:  LRFQG

A0A6J1DU55 uncharacterized protein LOC1110231351.1e-2248.11Show/hide
Query:  MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLLDQKGLEDENR-NWQFDS
        M+  LG A+G F++VDCN+   SWG SLRI++L+DI+KPLR+GI I+  G  G  WI  +YERLP+FCY C  IGH+  D        +D++R   ++  
Subjt:  MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLLDQKGLEDENR-NWQFDS

Query:  WLRFQG
        WLRF G
Subjt:  WLRFQG

A0A6J1DX30 uncharacterized protein LOC1110248742.2e-1842.86Show/hide
Query:  MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLLDQKGLEDENRNWQFDSW
        M+  LG A+G F E DC+  N  WG +LR+++++DISKPLR+GI ++  G  G  WI  +YERLP+FCY C               GL    +  Q+ SW
Subjt:  MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLLDQKGLEDENRNWQFDSW

Query:  LRFQG
        LR+QG
Subjt:  LRFQG

A0A803MV91 Uncharacterized protein2.6e-1641.41Show/hide
Query:  LGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLLDQKGLEDENRN-WQFDSWLR
        +GE +G F+E+D + D + WG+++RIK+L+DI+KPLR+G+++  G NQ    I  KYERL +FC+ C R+ HT ++    ++  +DE +  +Q+  WLR
Subjt:  LGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLLDQKGLEDENRN-WQFDSWLR

A0A803NE34 Uncharacterized protein1.4e-1748.48Show/hide
Query:  GEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLLDQKGLEDENRN---WQFDSWL
        GE++G FLE D + D + WG+ +R+KIL DI+KPLR+GI ID  GN    WI  KYERL +FCY C R+GHT +D  +  +G ED +     +Q+  WL
Subjt:  GEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLLDQKGLEDENRN---WQFDSWL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAGACATTTAGGGGAGGCCGTAGGGAGGTTCTTGGAGGTGGATTGTAATCAAGACAATGTTTCCTGGGGTGACAGTCTCCGTATCAAGATTTTAGTGGATATCTC
TAAGCCTCTACGCAAGGGAATTTGGATTGATCCTGGCGGTAATCAAGGAAACACTTGGATTCAATTTAAATATGAAAGATTACCGAACTTTTGCTATAGTTGTGATAGGA
TTGGACACACAATTAAAGACTCTTTGCTAGACCAAAAAGGTCTAGAAGATGAGAACAGGAATTGGCAGTTTGATAGTTGGCTTAGATTTCAAGGCCCGAATATTCGGAGA
AGAAGGAGAGATCCTCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTAGACATTTAGGGGAGGCCGTAGGGAGGTTCTTGGAGGTGGATTGTAATCAAGACAATGTTTCCTGGGGTGACAGTCTCCGTATCAAGATTTTAGTGGATATCTC
TAAGCCTCTACGCAAGGGAATTTGGATTGATCCTGGCGGTAATCAAGGAAACACTTGGATTCAATTTAAATATGAAAGATTACCGAACTTTTGCTATAGTTGTGATAGGA
TTGGACACACAATTAAAGACTCTTTGCTAGACCAAAAAGGTCTAGAAGATGAGAACAGGAATTGGCAGTTTGATAGTTGGCTTAGATTTCAAGGCCCGAATATTCGGAGA
AGAAGGAGAGATCCTCCCTAG
Protein sequenceShow/hide protein sequence
MSRHLGEAVGRFLEVDCNQDNVSWGDSLRIKILVDISKPLRKGIWIDPGGNQGNTWIQFKYERLPNFCYSCDRIGHTIKDSLLDQKGLEDENRNWQFDSWLRFQGPNIRR
RRRDPP