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Clc09G13560 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G13560
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description60S ribosomal protein L37a
Genome locationClcChr09:14339270..14351067
RNA-Seq ExpressionClc09G13560
SyntenyClc09G13560
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002674 - Ribosomal protein L37ae
IPR011331 - Ribosomal protein L37ae/L37e
IPR011332 - Zinc-binding ribosomal protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CDP13435.1 unnamed protein product [Coffea canephora]6.8e-2462.83Show/hide
Query:  FPLSSNLLP---GDPVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTV
        F  SS  LP      V +++ MTKRTKKAGIVGKYGTRY ++                       +AVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTV
Subjt:  FPLSSNLLP---GDPVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTV

Query:  RSTIRRLREQTES
        RSTIRRLREQTES
Subjt:  RSTIRRLREQTES

KAG6571778.1 SNF2 domain-containing protein CLASSY 3, partial [Cucurbita argyrosperma subsp. sororia]3.8e-2762.1Show/hide
Query:  FYALGSRAVSLFKFFPLSSNLLPGDPVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGA
        ++  GS  V +   F  SS   PGD VV +A MTKRTKKAGIVGKYGTRY ++                       +AVKRKAVGIWGCKDCGKVKAGGA
Subjt:  FYALGSRAVSLFKFFPLSSNLLPGDPVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGA

Query:  YTLNTASAVTVRSTIRRLREQTES
        YTLNTASAVTVRSTIRRLREQTES
Subjt:  YTLNTASAVTVRSTIRRLREQTES

KAG8484324.1 hypothetical protein CXB51_023812 [Gossypium anomalum]2.3e-2467.33Show/hide
Query:  GDPVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE
        G  ++S A MTKRTKKAGIVGKYGTRY ++                       +AVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE
Subjt:  GDPVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE

Query:  S
        S
Subjt:  S

RYR29151.1 hypothetical protein Ahy_B01g053468 [Arachis hypogaea]1.0e-2464.04Show/hide
Query:  LFKFFPLSSNLLPGDPVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVT
        LF  FP +  L   DPV     MTKRTKKAGIVGKYGTRY ++                       +AVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVT
Subjt:  LFKFFPLSSNLLPGDPVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVT

Query:  VRSTIRRLREQTES
        VRSTIRRLREQTES
Subjt:  VRSTIRRLREQTES

RYR40297.1 hypothetical protein Ahy_A09g046023 [Arachis hypogaea]3.0e-2455.47Show/hide
Query:  DIPIFYALGSRAVSLFKFFPLSSNLLPGDPVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVK
        + P   +  ++++S+F     SS ++   P    + MTKRTKKAGIVGKYGTRY ++                       +AVKRKAVGIWGCKDCGKVK
Subjt:  DIPIFYALGSRAVSLFKFFPLSSNLLPGDPVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVK

Query:  AGGAYTLNTASAVTVRSTIRRLREQTES
        AGGAYTLNTASAVTVRSTIRRLREQTES
Subjt:  AGGAYTLNTASAVTVRSTIRRLREQTES

TrEMBL top hitse value%identityAlignment
A0A068UY13 Uncharacterized protein3.3e-2462.83Show/hide
Query:  FPLSSNLLP---GDPVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTV
        F  SS  LP      V +++ MTKRTKKAGIVGKYGTRY ++                       +AVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTV
Subjt:  FPLSSNLLP---GDPVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTV

Query:  RSTIRRLREQTES
        RSTIRRLREQTES
Subjt:  RSTIRRLREQTES

A0A445ARW5 Uncharacterized protein5.1e-2564.04Show/hide
Query:  LFKFFPLSSNLLPGDPVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVT
        LF  FP +  L   DPV     MTKRTKKAGIVGKYGTRY ++                       +AVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVT
Subjt:  LFKFFPLSSNLLPGDPVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVT

Query:  VRSTIRRLREQTES
        VRSTIRRLREQTES
Subjt:  VRSTIRRLREQTES

A0A445BNP7 Uncharacterized protein1.5e-2455.47Show/hide
Query:  DIPIFYALGSRAVSLFKFFPLSSNLLPGDPVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVK
        + P   +  ++++S+F     SS ++   P    + MTKRTKKAGIVGKYGTRY ++                       +AVKRKAVGIWGCKDCGKVK
Subjt:  DIPIFYALGSRAVSLFKFFPLSSNLLPGDPVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVK

Query:  AGGAYTLNTASAVTVRSTIRRLREQTES
        AGGAYTLNTASAVTVRSTIRRLREQTES
Subjt:  AGGAYTLNTASAVTVRSTIRRLREQTES

A0A7J7CFD7 60S ribosomal protein L37a-24.3e-2467.68Show/hide
Query:  PVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
        P+ S   MTKRTKKAGIVGKYGTRY ++                       +AVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Subjt:  PVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

M0TU46 Uncharacterized protein1.9e-2467.68Show/hide
Query:  DPVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE
        DP V +  MTKRTKKAGIVGKYGTRY ++                       +AVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE
Subjt:  DPVVSQAAMTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE

SwissProt top hitse value%identityAlignment
P0DKK1 60S ribosomal protein L37a-11.7e-2569.57Show/hide
Query:  MTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
        MTKRTKKAGIVGKYGTRY ++                       FAVKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Subjt:  MTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

P0DKK2 60S ribosomal protein L37a-21.7e-2569.57Show/hide
Query:  MTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
        MTKRTKKAGIVGKYGTRY ++                       FAVKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Subjt:  MTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

Q9SRK6 Putative 60S ribosomal protein L37a-14.1e-2470.65Show/hide
Query:  MTKRTKKAGIVGKYGTRY------------VSTANTSF-------AVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
        MTKRTKKA IVGKYGTRY            VS  N  F       +VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Subjt:  MTKRTKKAGIVGKYGTRY------------VSTANTSF-------AVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

Q9XHE4 60S ribosomal protein L37a8.3e-2569.57Show/hide
Query:  MTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
        MTKRTKKAGIVGKYGTRY ++                       +AVKRKAVGIWGCK CGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Subjt:  MTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

Q9ZRS8 60S ribosomal protein L37a4.9e-2570.33Show/hide
Query:  MTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE
        MTKRTKKAGIVGKYGTRY ++                       FAVKRKAVGIWGCKDCGKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Subjt:  MTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE

Arabidopsis top hitse value%identityAlignment
AT3G10950.1 Zinc-binding ribosomal protein family protein2.9e-2570.65Show/hide
Query:  MTKRTKKAGIVGKYGTRY------------VSTANTSF-------AVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
        MTKRTKKA IVGKYGTRY            VS  N  F       +VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Subjt:  MTKRTKKAGIVGKYGTRY------------VSTANTSF-------AVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES

AT3G60245.1 Zinc-binding ribosomal protein family protein5.5e-2464.84Show/hide
Query:  MTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE
        M KRTKK GIVGKYGTRY ++                       + VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Subjt:  MTKRTKKAGIVGKYGTRYVSTANT-------------------SFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCCGGAGTTGGGCACGTTTGGTGGTTGCCGAAGTTGGCTGTTGGAGGTGGTTGCACGGAGTTGGTCGTCGGAGGTGGTTGTTGAAGTTGGTTATCAGAGGTGGTT
GTTGAAGTTGGTTATCAGAGCGTCGCGATGTTGTCCGTCATTGAAGCCTTGTCTCAAGCGCAGTGCCGCAGTATCGCAACGCTCCTTGCCCAAACACAGTGACGCCCACA
AAAGCGACGCCACGCTCTGCGACATCCCAATTTTTTATGCTCTTGGGTCTAGAGCGGTTTCTCTGTTCAAGTTCTTCCCACTTTCATCAAATCTTCTTCCCGGAGATCCT
GTGGTCAGCCAAGCAGCAATGACAAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGGTACCCGATATGTCAGCACAGCAAATACTTCTTTTGCAGTTAAGAGGAA
GGCAGTTGGAATTTGGGGCTGCAAAGATTGTGGTAAAGTGAAAGCCGGCGGTGCCTACACTCTCAACACTGCTAGTGCTGTGACAGTGAGAAGCACTATTAGGAGGCTGA
GAGAGCAGACTGAAAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCCGGAGTTGGGCACGTTTGGTGGTTGCCGAAGTTGGCTGTTGGAGGTGGTTGCACGGAGTTGGTCGTCGGAGGTGGTTGTTGAAGTTGGTTATCAGAGGTGGTT
GTTGAAGTTGGTTATCAGAGCGTCGCGATGTTGTCCGTCATTGAAGCCTTGTCTCAAGCGCAGTGCCGCAGTATCGCAACGCTCCTTGCCCAAACACAGTGACGCCCACA
AAAGCGACGCCACGCTCTGCGACATCCCAATTTTTTATGCTCTTGGGTCTAGAGCGGTTTCTCTGTTCAAGTTCTTCCCACTTTCATCAAATCTTCTTCCCGGAGATCCT
GTGGTCAGCCAAGCAGCAATGACAAAGAGAACCAAGAAGGCAGGCATTGTTGGAAAATATGGTACCCGATATGTCAGCACAGCAAATACTTCTTTTGCAGTTAAGAGGAA
GGCAGTTGGAATTTGGGGCTGCAAAGATTGTGGTAAAGTGAAAGCCGGCGGTGCCTACACTCTCAACACTGCTAGTGCTGTGACAGTGAGAAGCACTATTAGGAGGCTGA
GAGAGCAGACTGAAAGTTAA
Protein sequenceShow/hide protein sequence
MLPELGTFGGCRSWLLEVVARSWSSEVVVEVGYQRWLLKLVIRASRCCPSLKPCLKRSAAVSQRSLPKHSDAHKSDATLCDIPIFYALGSRAVSLFKFFPLSSNLLPGDP
VVSQAAMTKRTKKAGIVGKYGTRYVSTANTSFAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES