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Clc09G13880 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G13880
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS-protein homolog
Genome locationClcChr09:15766258..15766692
RNA-Seq ExpressionClc09G13880
SyntenyClc09G13880
Gene Ontology termsGO:0006974 - cellular response to DNA damage stimulus (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651384.1 hypothetical protein Csa_001671 [Cucumis sativus]3.8e-6778.47Show/hide
Query:  MEALKCLVIFGMVLTLGGQCYGQPGAEVPLSSWKINILNDMSKESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWP
        MEALK + + G++L L G+C GQPGAEVPLSSWK+NILN+M+K+SLF+ CKSKDDDLG +NL V QQFSW FKENLWQTTLYWCYMHNA SHASFNV+WP
Subjt:  MEALKCLVIFGMVLTLGGQCYGQPGAEVPLSSWKINILNDMSKESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWP

Query:  EKSGWLAFRCQFRNCIWSVRNDGIYLKTNTHNTFERIHIWEPGM
        E+SGWLAFRCQ RNCIWS R+DGIYLKTNTHNT+E IH WEPGM
Subjt:  EKSGWLAFRCQFRNCIWSVRNDGIYLKTNTHNTFERIHIWEPGM

KGN60342.2 hypothetical protein Csa_002569, partial [Cucumis sativus]1.4e-6680.56Show/hide
Query:  MEALKCLVIFGMVLTLGGQCYGQPGAEVPLSSWKINILNDMSKESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWP
        MEALK + I  ++L L G+C GQPGAEVPLSSWKINILN+M+K++LFL CKSKDDDLG +NL V QQFSW FKENLWQTTLYWCYMHNA SHASFNVFWP
Subjt:  MEALKCLVIFGMVLTLGGQCYGQPGAEVPLSSWKINILNDMSKESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWP

Query:  EKSGWLAFRCQFRNCIWSVRNDGIYLKTNTHNTFERIHIWEPGM
        EKSGWLAFRCQ RNCIWS R+DGIYLKTN HNTFE IH WEPGM
Subjt:  EKSGWLAFRCQFRNCIWSVRNDGIYLKTNTHNTFERIHIWEPGM

XP_004136434.3 S-protein homolog 1-like [Cucumis sativus]1.4e-6680.56Show/hide
Query:  MEALKCLVIFGMVLTLGGQCYGQPGAEVPLSSWKINILNDMSKESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWP
        MEALK + I  ++L L G+C GQPGAEVPLSSWKINILN+M+K++LFL CKSKDDDLG +NL V QQFSW FKENLWQTTLYWCYMHNA SHASFNVFWP
Subjt:  MEALKCLVIFGMVLTLGGQCYGQPGAEVPLSSWKINILNDMSKESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWP

Query:  EKSGWLAFRCQFRNCIWSVRNDGIYLKTNTHNTFERIHIWEPGM
        EKSGWLAFRCQ RNCIWS R+DGIYLKTN HNTFE IH WEPGM
Subjt:  EKSGWLAFRCQFRNCIWSVRNDGIYLKTNTHNTFERIHIWEPGM

XP_004136435.1 S-protein homolog 1-like [Cucumis sativus]3.8e-6778.47Show/hide
Query:  MEALKCLVIFGMVLTLGGQCYGQPGAEVPLSSWKINILNDMSKESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWP
        MEALK + + G++L L G+C GQPGAEVPLSSWK+NILN+M+K+SLF+ CKSKDDDLG +NL V QQFSW FKENLWQTTLYWCYMHNA SHASFNV+WP
Subjt:  MEALKCLVIFGMVLTLGGQCYGQPGAEVPLSSWKINILNDMSKESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWP

Query:  EKSGWLAFRCQFRNCIWSVRNDGIYLKTNTHNTFERIHIWEPGM
        E+SGWLAFRCQ RNCIWS R+DGIYLKTNTHNT+E IH WEPGM
Subjt:  EKSGWLAFRCQFRNCIWSVRNDGIYLKTNTHNTFERIHIWEPGM

XP_007200064.2 uncharacterized protein LOC18766253 [Prunus persica]6.7e-3246.58Show/hide
Query:  MEALKCLVIFGM---VLTLGGQCYGQPGAEVPLSSWKINILNDM-SKESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFN
        M A K  V+F +   +L L   C G PG  +  + W ++++N++ + ++LF HCKSKDDDLGERNLA G +F+W FKEN + TTLYWCYM     HA+ +
Subjt:  MEALKCLVIFGM---VLTLGGQCYGQPGAEVPLSSWKINILNDM-SKESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFN

Query:  VFWPE-KSGWLAFRCQFRNCIWSVRNDGIYLKTNTHNTFERIHIWE
        VFW E    WL +RC +++CIW  ++DGIY+K    N  E  H WE
Subjt:  VFWPE-KSGWLAFRCQFRNCIWSVRNDGIYLKTNTHNTFERIHIWE

TrEMBL top hitse value%identityAlignment
A0A251N118 S-protein homolog3.3e-3246.58Show/hide
Query:  MEALKCLVIFGM---VLTLGGQCYGQPGAEVPLSSWKINILNDM-SKESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFN
        M A K  V+F +   +L L   C G PG  +  + W ++++N++ + ++LF HCKSKDDDLGERNLA G +F+W FKEN + TTLYWCYM     HA+ +
Subjt:  MEALKCLVIFGM---VLTLGGQCYGQPGAEVPLSSWKINILNDM-SKESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFN

Query:  VFWPE-KSGWLAFRCQFRNCIWSVRNDGIYLKTNTHNTFERIHIWE
        VFW E    WL +RC +++CIW  ++DGIY+K    N  E  H WE
Subjt:  VFWPE-KSGWLAFRCQFRNCIWSVRNDGIYLKTNTHNTFERIHIWE

A0A5E4EJG4 S-protein homolog4.2e-3246.58Show/hide
Query:  MEALKCLVIFGM---VLTLGGQCYGQPGAEVPLSSWKINILNDMSK-ESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFN
        M A K  V+F +   +L L   C G P   +  ++W ++++N++S  ++LF HCKSKDDDLGERNLA G +F+W FKEN + TTLYWCYM     HA+ +
Subjt:  MEALKCLVIFGM---VLTLGGQCYGQPGAEVPLSSWKINILNDMSK-ESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFN

Query:  VFWPE-KSGWLAFRCQFRNCIWSVRNDGIYLKTNTHNTFERIHIWE
        VFW E    WL +RC +++CIW  ++DGIY+K    N  E  H WE
Subjt:  VFWPE-KSGWLAFRCQFRNCIWSVRNDGIYLKTNTHNTFERIHIWE

A0A6J1L0E8 S-protein homolog8.0e-3148.28Show/hide
Query:  VPLSSWKINILNDMSKESLFLHCKSKDDDLGERNL-AVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSG-WLAFRCQFRNCIWSVRNDGIY
        VP+  W+++++N ++  +LF+HCKSKDDDLG  NL  +G +F W FK NLW TTL+WC +   N++ SF  FW EK+  WL +RC  RNCIW+ ++DG+Y
Subjt:  VPLSSWKINILNDMSKESLFLHCKSKDDDLGERNL-AVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSG-WLAFRCQFRNCIWSVRNDGIY

Query:  LKTNTHNTFERIHIWE
        L+ N     ER+H W+
Subjt:  LKTNTHNTFERIHIWE

A0A6J5Y6Z2 S-protein homolog9.5e-3247.26Show/hide
Query:  MEALKCLVIFGM---VLTLGGQCYGQPGAEVPLSSWKINILNDMSK-ESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFN
        M A K  V+F +   +L L   C G P   +  +SW ++++N++S  ++LF HCKSKDDDLGERNLA G +F+W FKEN   TTLYWCYM    +HA+ +
Subjt:  MEALKCLVIFGM---VLTLGGQCYGQPGAEVPLSSWKINILNDMSK-ESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFN

Query:  VFWPE-KSGWLAFRCQFRNCIWSVRNDGIYLKTNTHNTFERIHIWE
        VFW E +  WL +RC +++CIW  ++DGIY+K    N  E  H WE
Subjt:  VFWPE-KSGWLAFRCQFRNCIWSVRNDGIYLKTNTHNTFERIHIWE

M5VWE5 S-protein homolog (Fragment)2.1e-3148.09Show/hide
Query:  VLTLGGQCYGQPGAEVPLSSWKINILNDM-SKESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPE-KSGWLAFRC
        +L L   C G PG  +  + W ++++N++ + ++LF HCKSKDDDLGERNLA G +F+W FKEN + TTLYWCYM     HA+ +VFW E    WL +RC
Subjt:  VLTLGGQCYGQPGAEVPLSSWKINILNDM-SKESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPE-KSGWLAFRC

Query:  QFRNCIWSVRNDGIYLKTNTHNTFERIHIWE
         +++CIW  ++DGIY+K    N  E  H WE
Subjt:  QFRNCIWSVRNDGIYLKTNTHNTFERIHIWE

SwissProt top hitse value%identityAlignment
B3H730 S-protein homolog 182.9e-0933.33Show/hide
Query:  INILNDMSKE-SLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGWLAFRCQFRNCIWSVRNDG
        ++I+ND+     L LHCKSK  DLG ++LA  Q + +    N+W+TTL++C+    N    F++   ++       C++  C+WS+R  G
Subjt:  INILNDMSKE-SLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGWLAFRCQFRNCIWSVRNDG

F4JLQ5 S-protein homolog 21.6e-1229.91Show/hide
Query:  PLSSWKINILNDMSKE-SLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGWLAFRCQFRNCIWSVRNDGIYLK
        P S   + I ND+  + +L  HCKSKDDDLG R L  G+ +S+ F    +  TLY+C     N   SF+++   +      +C+   C+W +R +G    
Subjt:  PLSSWKINILNDMSKE-SLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGWLAFRCQFRNCIWSVRNDGIYLK

Query:  TNTHNTFERIHIWEPGM
         +    F+  + W   +
Subjt:  TNTHNTFERIHIWEPGM

F4JLS0 S-protein homolog 14.8e-2542.61Show/hide
Query:  LSSWKINILNDMSK-ESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGWLAFRCQFRNCIWSVRNDGIYLKT
        +S W++ ++N ++  E+LF+HCKSK+DDLGE NL    +FSW+F EN+  +T +WCYM+  N H + NVFW +    L  RC ++NCIW+ + DG+YL  
Subjt:  LSSWKINILNDMSK-ESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGWLAFRCQFRNCIWSVRNDGIYLKT

Query:  NTHNTFERIHIWEPG
        +          WE G
Subjt:  NTHNTFERIHIWEPG

P0DN93 S-protein homolog 294.4e-1027.54Show/hide
Query:  KCLVIFGMVL-TLGGQCYGQPGAEVPLSSWKINILNDMSKE-SLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEK
        K  V+  ++L  +   C+G      P +   + + N++S + +L + C+SKDDDLGE  L  GQ F W F+ + ++TTL+ C     N+   F+ +  ++
Subjt:  KCLVIFGMVL-TLGGQCYGQPGAEVPLSSWKINILNDMSKE-SLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEK

Query:  SGWLAFRCQFRNCIWSVRNDGIYLKTNTHNTFERIHIW
             + C      WS+  D   +  N +  F+R + W
Subjt:  SGWLAFRCQFRNCIWSVRNDGIYLKTNTHNTFERIHIW

Q2HQ46 S-protein homolog 741.3e-2243.88Show/hide
Query:  LSSWKINILNDMSK-ESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGWLAFRCQFRNCIWSVRNDGIYL
        +S W++ + N ++  E+LF+HCKSK++DLG+ NL    +FSW+F EN+  +TL+WCYM   + H +  VFW +    L  RC ++NC+W+ +NDG+YL
Subjt:  LSSWKINILNDMSK-ESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGWLAFRCQFRNCIWSVRNDGIYL

Arabidopsis top hitse value%identityAlignment
AT1G28306.1 Plant self-incompatibility protein S1 family4.1e-1132.74Show/hide
Query:  KINILNDMSKE----SLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGWLAFRCQFRNCIWSVRNDGIYLKTN
        KINI ND+       +LF+HCKSK  D G + L  G+ + +  KE   + TL+WC + +   +     F   K   +    Q  +  W  R DGIY + N
Subjt:  KINILNDMSKE----SLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGWLAFRCQFRNCIWSVRNDGIYLKTN

Query:  THNTFERIHIWEP
           T  ++H W+P
Subjt:  THNTFERIHIWEP

AT4G16195.1 Plant self-incompatibility protein S1 family1.1e-1329.91Show/hide
Query:  PLSSWKINILNDMSKE-SLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGWLAFRCQFRNCIWSVRNDGIYLK
        P S   + I ND+  + +L  HCKSKDDDLG R L  G+ +S+ F    +  TLY+C     N   SF+++   +      +C+   C+W +R +G    
Subjt:  PLSSWKINILNDMSKE-SLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGWLAFRCQFRNCIWSVRNDGIYLK

Query:  TNTHNTFERIHIWEPGM
         +    F+  + W   +
Subjt:  TNTHNTFERIHIWEPGM

AT4G16295.1 S-protein homologue 13.4e-2642.61Show/hide
Query:  LSSWKINILNDMSK-ESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGWLAFRCQFRNCIWSVRNDGIYLKT
        +S W++ ++N ++  E+LF+HCKSK+DDLGE NL    +FSW+F EN+  +T +WCYM+  N H + NVFW +    L  RC ++NCIW+ + DG+YL  
Subjt:  LSSWKINILNDMSK-ESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGWLAFRCQFRNCIWSVRNDGIYLKT

Query:  NTHNTFERIHIWEPG
        +          WE G
Subjt:  NTHNTFERIHIWEPG

AT4G29035.1 Plant self-incompatibility protein S1 family9.4e-2443.88Show/hide
Query:  LSSWKINILNDMSK-ESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGWLAFRCQFRNCIWSVRNDGIYL
        +S W++ + N ++  E+LF+HCKSK++DLG+ NL    +FSW+F EN+  +TL+WCYM   + H +  VFW +    L  RC ++NC+W+ +NDG+YL
Subjt:  LSSWKINILNDMSK-ESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGWLAFRCQFRNCIWSVRNDGIYL

AT5G04350.1 Plant self-incompatibility protein S1 family2.6e-1334.17Show/hide
Query:  LVIFGMVLTLGGQCYGQPGAEVPLSSWKINILNDMSKESLF-LHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGW
        L IF +V+   G C G   A   +   K+ + N +    L  +HC+SKDDDLGE  L +GQ + + F +N+WQTT + C M    +      F   ++ W
Subjt:  LVIFGMVLTLGGQCYGQPGAEVPLSSWKINILNDMSKESLF-LHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGW

Query:  LAFRCQFRNCIWSVRNDGIY
           +    +C W  R DGIY
Subjt:  LAFRCQFRNCIWSVRNDGIY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCTCTCAAATGTTTAGTAATCTTCGGTATGGTTTTAACATTGGGTGGACAATGTTATGGGCAGCCTGGTGCAGAGGTTCCACTAAGTTCATGGAAGATTAACAT
TTTGAATGACATGAGTAAAGAGTCATTGTTTCTTCATTGCAAGTCTAAAGATGATGATTTGGGTGAACGAAACCTAGCTGTGGGACAACAATTTTCTTGGCATTTCAAGG
AGAATTTGTGGCAGACAACACTCTATTGGTGTTATATGCACAATGCCAATAGTCATGCTTCATTTAATGTGTTTTGGCCTGAGAAATCAGGTTGGCTTGCTTTCAGATGT
CAATTTAGAAACTGCATTTGGTCTGTTCGAAATGATGGGATTTACTTGAAGACCAACACCCATAATACATTTGAGCGCATACATATTTGGGAACCCGGGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCTCTCAAATGTTTAGTAATCTTCGGTATGGTTTTAACATTGGGTGGACAATGTTATGGGCAGCCTGGTGCAGAGGTTCCACTAAGTTCATGGAAGATTAACAT
TTTGAATGACATGAGTAAAGAGTCATTGTTTCTTCATTGCAAGTCTAAAGATGATGATTTGGGTGAACGAAACCTAGCTGTGGGACAACAATTTTCTTGGCATTTCAAGG
AGAATTTGTGGCAGACAACACTCTATTGGTGTTATATGCACAATGCCAATAGTCATGCTTCATTTAATGTGTTTTGGCCTGAGAAATCAGGTTGGCTTGCTTTCAGATGT
CAATTTAGAAACTGCATTTGGTCTGTTCGAAATGATGGGATTTACTTGAAGACCAACACCCATAATACATTTGAGCGCATACATATTTGGGAACCCGGGATGTGA
Protein sequenceShow/hide protein sequence
MEALKCLVIFGMVLTLGGQCYGQPGAEVPLSSWKINILNDMSKESLFLHCKSKDDDLGERNLAVGQQFSWHFKENLWQTTLYWCYMHNANSHASFNVFWPEKSGWLAFRC
QFRNCIWSVRNDGIYLKTNTHNTFERIHIWEPGM