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Clc09G14010 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G14010
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr09:16730532..16731943
RNA-Seq ExpressionClc09G14010
SyntenyClc09G14010
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON50721.1 hypothetical protein TorRG33x02_313500 [Trema orientale]1.5e-0728.26Show/hide
Query:  QNVLQAPQGFNGTKNAKTSSLKHLMIDFVKKSRSR---------------------TTTLENLVQAITNTMKTQ--GK-------NPKEECNAIHLRSGK
        +NVLQ P GFN   + K SSL+ L+  F+ ++R +                       +LE  +  + N++K Q  GK       NPK+ C AI LR+GK
Subjt:  QNVLQAPQGFNGTKNAKTSSLKHLMIDFVKKSRSR---------------------TTTLENLVQAITNTMKTQ--GK-------NPKEECNAIHLRSGK

Query:  ELNKSMVIDDDEPSREEIEATMEDAPTKEALAPKEKEAKSKSNIGSTFNFLPFVPNTLPFPQRFQKK---------------------------------
        E+  S            ++  + D  TKE +  +  +  SK +  S  +  P +   LP+PQRFQKK                                 
Subjt:  ELNKSMVIDDDEPSREEIEATMEDAPTKEALAPKEKEAKSKSNIGSTFNFLPFVPNTLPFPQRFQKK---------------------------------

Query:  ---KDVLFRKKRYGDHETVTLAKECGVVLR
           KDV+ +K+R  D+ETV L KEC  +L+
Subjt:  ---KDVLFRKKRYGDHETVTLAKECGVVLR

WP_217833143.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]2.0e-1546.15Show/hide
Query:  IHLRSGKELNKSMVIDDDEPSREEIEATMEDAPTKEALAPKEKEAKSKSNIGSTFNFLPFVPNTLPFPQRFQKK--------------------------
        I LRSGKE NK +++DD+E  +EE EA + DAP ++  A KEKE KSKSNIGST N   F+PNTLPFPQ+FQKK                          
Subjt:  IHLRSGKELNKSMVIDDDEPSREEIEATMEDAPTKEALAPKEKEAKSKSNIGSTFNFLPFVPNTLPFPQRFQKK--------------------------

Query:  ----------KDVLFRKKRYGDHETVTLAK
                  K+VL +KKRYGD+ETV L +
Subjt:  ----------KDVLFRKKRYGDHETVTLAK

WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]7.4e-1847.97Show/hide
Query:  QNVLQAPQGFNGTKNAKTSSLKHLMIDFVKKSRSRTTTLENLVQAITNTMKTQGK------------------------------NPKEECNAIHLRSGK
        +NVLQAPQGFNG  NAKTSSL+ +M+DFVK+SRSRTTTLEN VQAI +T+++QGK                              NP+EEC A+ LRSGK
Subjt:  QNVLQAPQGFNGTKNAKTSSLKHLMIDFVKKSRSRTTTLENLVQAITNTMKTQGK------------------------------NPKEECNAIHLRSGK

Query:  ELNKSMVIDDDEPSREEIEATME
        +L+  ++ID+DE   +E++ T++
Subjt:  ELNKSMVIDDDEPSREEIEATME

WP_217833170.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]1.0e-0647.19Show/hide
Query:  TTTLENLVQAITNTMKTQG------------------------------KNPKEECNAIHLRSGKELNKSMVIDDDEPSREEIEATMED
        TTTLEN VQAI +T+++QG                              KNPKEECNAI LRSGKELNK ++ D DEP +EE EA +ED
Subjt:  TTTLENLVQAITNTMKTQG------------------------------KNPKEECNAIHLRSGKELNKSMVIDDDEPSREEIEATMED

XP_022883717.1 uncharacterized protein LOC111400543 [Olea europaea var. sylvestris]1.0e-0625.6Show/hide
Query:  QNVLQAPQGFNGTKNAKTSSLKHLMIDFVKKSRSR------------------TTTLENL---VQAITNTMKTQGK---------NPKEECNAIHLRSGK
        +N LQ P GFN   +     L+ ++  F+ ++RSR                    T++NL   +  +  +MK+Q K         NPKE C A+ LRSGK
Subjt:  QNVLQAPQGFNGTKNAKTSSLKHLMIDFVKKSRSR------------------TTTLENL---VQAITNTMKTQGK---------NPKEECNAIHLRSGK

Query:  ELNKSMVIDDDEPSREEIEATMEDAPTKEALAPKEKEAKSKSNIGSTFNFL-----PFVPNTLPFPQRFQKK--------KDVLFRKKRYGDHETVTLAK
        ++ +S   +D  P+         D   ++ +  +EK+AK  +    T++       P +   LPF Q   ++        K+V+ +K++  ++ET+ L +
Subjt:  ELNKSMVIDDDEPSREEIEATMEDAPTKEALAPKEKEAKSKSNIGSTFNFL-----PFVPNTLPFPQRFQKK--------KDVLFRKKRYGDHETVTLAK

Query:  ECGVVLR
        EC  +L+
Subjt:  ECGVVLR

TrEMBL top hitse value%identityAlignment
A0A2G9H2I8 DNA-directed DNA polymerase3.8e-0427.91Show/hide
Query:  KTSSLKHLMIDFVKKSRSRTTTLENLVQAITNTMKTQ-------------GKNPKEECNAIHLRSGKELNKSMVIDDDEPSRE-EIEATMEDA------P
        K  SL+  +I F+  + +   T+E  +  + N + +Q              +N K +C A+ LR+G+EL +  VI +   S+E E+EA +E +      P
Subjt:  KTSSLKHLMIDFVKKSRSRTTTLENLVQAITNTMKTQ-------------GKNPKEECNAIHLRSGKELNKSMVIDDDEPSRE-EIEATMEDA------P

Query:  TKEALAPKEKEAKSKSNIGSTFNFL----PFVPNTLPFPQRFQKKKDVLFRKKRYGDHETVTLAKECGVVLR
            +  K+K  K        F  L    PF       P   +  KD+L +K+R GD+ETV L +EC  +++
Subjt:  TKEALAPKEKEAKSKSNIGSTFNFL----PFVPNTLPFPQRFQKKKDVLFRKKRYGDHETVTLAKECGVVLR

A0A2G9HNK6 Uncharacterized protein6.5e-0427.22Show/hide
Query:  KTSSLKHLMIDFVKKSRSRTTTLENLVQAITNTMKTQGKNPKEECNAIHLRSGKELNKSMVIDDDEPSREEIEATMEDAPTKEALAPKEKEAKSKSNIGS
        K  SL+  +I F+  + +   T+E  +              K +C A+ LR+G+EL + +     EP++ + +  + +   KE  AP E+  K K     
Subjt:  KTSSLKHLMIDFVKKSRSRTTTLENLVQAITNTMKTQGKNPKEECNAIHLRSGKELNKSMVIDDDEPSREEIEATMEDAPTKEALAPKEKEAKSKSNIGS

Query:  TFNFL----------PFVPNTLPFPQRFQKKKDVLFRKKRYGDHETVTLAKECGVVLR
           FL          PF       P   +  KD+L +K+R GD+ETVTL +EC  +++
Subjt:  TFNFL----------PFVPNTLPFPQRFQKKKDVLFRKKRYGDHETVTLAKECGVVLR

A0A2P5BPI6 Uncharacterized protein7.5e-0828.26Show/hide
Query:  QNVLQAPQGFNGTKNAKTSSLKHLMIDFVKKSRSR---------------------TTTLENLVQAITNTMKTQ--GK-------NPKEECNAIHLRSGK
        +NVLQ P GFN   + K SSL+ L+  F+ ++R +                       +LE  +  + N++K Q  GK       NPK+ C AI LR+GK
Subjt:  QNVLQAPQGFNGTKNAKTSSLKHLMIDFVKKSRSR---------------------TTTLENLVQAITNTMKTQ--GK-------NPKEECNAIHLRSGK

Query:  ELNKSMVIDDDEPSREEIEATMEDAPTKEALAPKEKEAKSKSNIGSTFNFLPFVPNTLPFPQRFQKK---------------------------------
        E+  S            ++  + D  TKE +  +  +  SK +  S  +  P +   LP+PQRFQKK                                 
Subjt:  ELNKSMVIDDDEPSREEIEATMEDAPTKEALAPKEKEAKSKSNIGSTFNFLPFVPNTLPFPQRFQKK---------------------------------

Query:  ---KDVLFRKKRYGDHETVTLAKECGVVLR
           KDV+ +K+R  D+ETV L KEC  +L+
Subjt:  ---KDVLFRKKRYGDHETVTLAKECGVVLR

A0A6J1DU19 uncharacterized protein LOC1110243613.5e-0525.98Show/hide
Query:  SGTEKLIVFQNVLQAPQGFNGTKNAKTSSLKHLMIDFVKKSRSRTTTLENLVQA---------------------ITNTMKTQGK---------NPKEEC
        + T+    ++  ++  Q F      K SSL+ L+  F+ + RSR + +EN V+                      I  T+ T  K          P+E C
Subjt:  SGTEKLIVFQNVLQAPQGFNGTKNAKTSSLKHLMIDFVKKSRSRTTTLENLVQA---------------------ITNTMKTQGK---------NPKEEC

Query:  NAIHLRSGKELNKSMVIDDDEPSREEIEATMEDAPTKEALAPKEKEAKSKSNIGSTFNFLPFVPNTL-PFPQRFQKKKDVLFRKKRYGDHETVTLAKECG
         A+ LRSGKEL +      +EP     E   ++   KEA    + +  + S + S  N LP+  + L   P   +  KD++  K++   +ETV L +EC 
Subjt:  NAIHLRSGKELNKSMVIDDDEPSREEIEATMEDAPTKEALAPKEKEAKSKSNIGSTFNFLPFVPNTL-PFPQRFQKKKDVLFRKKRYGDHETVTLAKECG

Query:  VVLR
         +L+
Subjt:  VVLR

A0A6P6X554 uncharacterized protein LOC1137396858.5e-0433.03Show/hide
Query:  NPKEECNAIHLRSGKELNKSMVIDDDEPSREEIEATMEDAPTKEALAPKEKEAKSKSNIGSTFNFLPFVPNTLPFPQRFQKKKDVLFRKKRYGDHETVTL
        NPKE   AI LRSGK+L    V+   E  ++E E   E    +EA+  +    K + N  S+   +P +P  +P   +F   K+++ RK++  D ET+ L
Subjt:  NPKEECNAIHLRSGKELNKSMVIDDDEPSREEIEATMEDAPTKEALAPKEKEAKSKSNIGSTFNFLPFVPNTLPFPQRFQKKKDVLFRKKRYGDHETVTL

Query:  AKECGVVLR
         +EC V+++
Subjt:  AKECGVVLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCTGATGATGCTCAGAATCCTTCTCTCAGAAGAGCTCGAAATGGAGGCTGGTTATGGTGAAGGAGAAAAAGTGCATAGCTTTCGCCTCTTGAGCTGGCTCGACGC
AGGTTTCCACTTGTTCTCGCAGCAGCTTCGTTTCTTCGTGCTTCGCGCTTCTTTTCTTCTTAACCCTGCATCAGGAACAGAAAAGCTCATCGTTTTTCAGAACGTATTGC
AAGCACCTCAAGGGTTCAATGGTACAAAGAATGCAAAGACATCATCTTTGAAACATTTAATGATTGATTTTGTCAAAAAATCAAGATCAAGGACTACCACATTGGAAAAC
TTGGTACAAGCCATTACCAATACCATGAAAACCCAAGGCAAGAACCCTAAGGAGGAGTGCAATGCCATACACCTTAGAAGTGGCAAGGAGTTGAACAAGTCTATGGTGAT
TGACGATGATGAACCTTCACGAGAGGAAATTGAGGCCACCATGGAGGATGCACCAACTAAAGAAGCGCTAGCACCTAAGGAAAAGGAGGCAAAATCTAAGTCCAATATAG
GGAGTACTTTTAATTTTCTTCCTTTTGTCCCTAATACGTTACCTTTTCCTCAACGATTTCAAAAGAAAAAGGATGTTTTGTTTAGGAAGAAGAGGTATGGGGACCATGAG
ACAGTAACATTGGCCAAGGAGTGTGGTGTAGTGCTTAGGGGTGTTCGTGGTTCGGTTTGGTTCGGTTTTGGGCTAAAACTGAACCGAACCGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTCTGATGATGCTCAGAATCCTTCTCTCAGAAGAGCTCGAAATGGAGGCTGGTTATGGTGAAGGAGAAAAAGTGCATAGCTTTCGCCTCTTGAGCTGGCTCGACGC
AGGTTTCCACTTGTTCTCGCAGCAGCTTCGTTTCTTCGTGCTTCGCGCTTCTTTTCTTCTTAACCCTGCATCAGGAACAGAAAAGCTCATCGTTTTTCAGAACGTATTGC
AAGCACCTCAAGGGTTCAATGGTACAAAGAATGCAAAGACATCATCTTTGAAACATTTAATGATTGATTTTGTCAAAAAATCAAGATCAAGGACTACCACATTGGAAAAC
TTGGTACAAGCCATTACCAATACCATGAAAACCCAAGGCAAGAACCCTAAGGAGGAGTGCAATGCCATACACCTTAGAAGTGGCAAGGAGTTGAACAAGTCTATGGTGAT
TGACGATGATGAACCTTCACGAGAGGAAATTGAGGCCACCATGGAGGATGCACCAACTAAAGAAGCGCTAGCACCTAAGGAAAAGGAGGCAAAATCTAAGTCCAATATAG
GGAGTACTTTTAATTTTCTTCCTTTTGTCCCTAATACGTTACCTTTTCCTCAACGATTTCAAAAGAAAAAGGATGTTTTGTTTAGGAAGAAGAGGTATGGGGACCATGAG
ACAGTAACATTGGCCAAGGAGTGTGGTGTAGTGCTTAGGGGTGTTCGTGGTTCGGTTTGGTTCGGTTTTGGGCTAAAACTGAACCGAACCGCTTAA
Protein sequenceShow/hide protein sequence
MTLMMLRILLSEELEMEAGYGEGEKVHSFRLLSWLDAGFHLFSQQLRFFVLRASFLLNPASGTEKLIVFQNVLQAPQGFNGTKNAKTSSLKHLMIDFVKKSRSRTTTLEN
LVQAITNTMKTQGKNPKEECNAIHLRSGKELNKSMVIDDDEPSREEIEATMEDAPTKEALAPKEKEAKSKSNIGSTFNFLPFVPNTLPFPQRFQKKKDVLFRKKRYGDHE
TVTLAKECGVVLRGVRGSVWFGFGLKLNRTA