CuGenDBv2

Gene ID	Clc09G14110
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	NERD domain-containing protein
Genome location	ClcChr09:16988490..16996010
RNA-Seq Expression	Clc09G14110
Synteny	Clc09G14110
Gene Ontology terms	NA
InterPro domains	IPR011528 - Nuclease-related domain, NERD

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004148346.1 uncharacterized protein LOC101206635 isoform X1 [Cucumis sativus]

4.3e-78

94.16

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Query:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        MWAEILCGFLAFRVLRRFFFPRDEMEIETIDS+ALFA ASRLEKLYGGKAF+GLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
Subjt:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL
        GDGRQ SEI+PDPVAETRRWVSILESYFEQRGV LPEGYLSWKVL+PNPKFR +
Subjt:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL

XP_022157167.1 uncharacterized protein LOC111023945 [Momordica charantia]

1.8e-68

84.42

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Query:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        MWAEILCGF+AFRVLRRFF P+DEMEIE  DSNA+FAAASRLEKLYGG+ F+GLRIPDADTG RQSIDMVLVTKG+AVVI VKNLSG VS+SADGSWICE
Subjt:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL
        GDG Q SEIMPDPV ETRRW SILESY EQRGV LPEGYLS KVL+PNPKFR +
Subjt:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL

XP_022957721.1 uncharacterized protein LOC111459180 [Cucurbita moschata]

3.1e-68

83.77

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Query:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        M+ EILCGF+AFR+LRRFF  RDE+EIET DSNALFA ASRLEK+Y GK F+GLRIPDADTGLRQSIDMVLVTKGEAVV+ VKNLSGFVS+SADGSWICE
Subjt:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL
        GDGRQ SEI+PDPVAETRRW SILESY E+RGV LPEGYLSWKVL+PNPKFR +
Subjt:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL

XP_031738513.1 uncharacterized protein LOC101206635 isoform X2 [Cucumis sativus]

4.3e-78

94.16

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Query:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        MWAEILCGFLAFRVLRRFFFPRDEMEIETIDS+ALFA ASRLEKLYGGKAF+GLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
Subjt:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL
        GDGRQ SEI+PDPVAETRRWVSILESYFEQRGV LPEGYLSWKVL+PNPKFR +
Subjt:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL

XP_038888004.1 uncharacterized protein LOC120077943 [Benincasa hispida]

1.8e-76

92.86

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Query:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFA ASRLEKLYGGK F+GLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
Subjt:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL
        GDGRQ S I+PDPVAETRRWV ILESYFE+RGV LPEGYLSWKVL+PNPKFR L
Subjt:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKG9 NERD domain-containing protein

2.1e-78

94.16

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Query:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        MWAEILCGFLAFRVLRRFFFPRDEMEIETIDS+ALFA ASRLEKLYGGKAF+GLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
Subjt:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL
        GDGRQ SEI+PDPVAETRRWVSILESYFEQRGV LPEGYLSWKVL+PNPKFR +
Subjt:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL

A0A6J1DTU9 uncharacterized protein LOC111023945

8.7e-69

84.42

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Query:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        MWAEILCGF+AFRVLRRFF P+DEMEIE  DSNA+FAAASRLEKLYGG+ F+GLRIPDADTG RQSIDMVLVTKG+AVVI VKNLSG VS+SADGSWICE
Subjt:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL
        GDG Q SEIMPDPV ETRRW SILESY EQRGV LPEGYLS KVL+PNPKFR +
Subjt:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL

A0A6J1H014 uncharacterized protein LOC111459180

1.5e-68

83.77

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Query:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        M+ EILCGF+AFR+LRRFF  RDE+EIET DSNALFA ASRLEK+Y GK F+GLRIPDADTGLRQSIDMVLVTKGEAVV+ VKNLSGFVS+SADGSWICE
Subjt:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL
        GDGRQ SEI+PDPVAETRRW SILESY E+RGV LPEGYLSWKVL+PNPKFR +
Subjt:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL

A0A6J1K1B0 uncharacterized protein LOC111490811

4.3e-68

83.12

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Query:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        MW EILCGF+AFR+LRRFF   D +EIET DSNALFA ASRLEK+Y GK F+GLRIPDADTGLRQSIDMVLVTKGEAVV+ VKNLSGFVS+SADGSWICE
Subjt:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL
        GDGRQ SEI+PDPVAETRRW SILESY E+RGV LPEGYLSWKVL+PNPKFR +
Subjt:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL

A0A7J7CMM4 Plasma membrane isoform 1

1.1e-55

66.23

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Query:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        MW EI CG + ++++RRFF   D +++ET DSNA+F+ A+RLEKLYGGKA++GLRIPD DTG RQ+IDMVLVTKGEAVVI VKNL+GFVS++ DGSW+CE
Subjt:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL
        GDGR  +E  PDPVAE +R  SILE+Y EQRGV LPEGY S+K+++PNPK R +
Subjt:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G65020.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

2.5e-52

59.74

Show/hide

Query:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        MW EI+CG + ++++RRFF+  +  ++ET DS ALF+ A RLEKLYGGKA++GLRIPDADT  RQ ID+VLVTKG+ VVI VKNLSG V++++DGSW+CE
Subjt:  MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL
        G     +E  PDP+AE ++  S+LESY EQRGVTL EG +S KV++PNP FR +
Subjt:  GDGRQNSEIMPDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTGGGCGGAGATTCTCTGTGGCTTCTTAGCATTTAGAGTGCTCAGGCGATTCTTTTTTCCAAGAGACGAAATGGAGATCGAGACCATTGATTCTAATGCCCTATTCGC
CGCTGCTTCTAGACTGGAGAAGCTTTATGGTGGAAAGGCTTTTATGGGACTTCGAATTCCAGACGCTGACACTGGTTTGCGACAGAGTATTGATATGGTGCTTGTAACCA
AAGGGGAAGCAGTGGTGATATGTGTCAAAAATCTTTCAGGTTTTGTTTCCATGAGTGCTGATGGAAGCTGGATCTGTGAAGGTGATGGTAGACAAAACTCAGAGATTATG
CCTGATCCGGTAGCTGAGACACGAAGATGGGTTTCAATTCTTGAATCATACTTTGAGCAGAGAGGAGTTACGCTACCAGAAGGATATTTATCATGGAAAGTTCTGGTTCC
CAACCCAAAATTCCGAAACCTTCAAAAACTACATTTGGTTGTTCAAGAAAATCAAGAACTCAATCAAGATTGTAAAATTGAGCAAGCAACACGCAAGATAGAAAACTCAG
AAGGAACATATAACCTAGAAGAAGAATTTGAAGATGTTGATTCAGAAGTAGTCTCGAGTGAAGAAGAAAAATCCAATGAAGAAGATGGAAAAGAGGTATCAAGCATCGAA
ACTTTAAATGTCGAGGCGGAAATAAAAAAATCGAGCAAGAATGACACACCGATTGTGTTGGAAATCAATTACCACAACGTCAAAGAACTTGAAGCAAATGATGAAGAAGA
TATGATTCTTGAAGGGTTCTCTTCGGAAGCTAATTCTTTTGTGATTGGTCCTATTTTGAATGAGCATGATGGAAACTTCGTTTTTTGGGTTTATGGTTGA

mRNA sequence

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Protein sequence

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MWAEILCGFLAFRVLRRFFFPRDEMEIETIDSNALFAAASRLEKLYGGKAFMGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQNSEIM
PDPVAETRRWVSILESYFEQRGVTLPEGYLSWKVLVPNPKFRNLQKLHLVVQENQELNQDCKIEQATRKIENSEGTYNLEEEFEDVDSEVVSSEEEKSNEEDGKEVSSIE
TLNVEAEIKKSSKNDTPIVLEINYHNVKELEANDEEDMILEGFSSEANSFVIGPILNEHDGNFVFWVYG

Clc09G14110 (gene) of Watermelon (cordophanus) v2 genome