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Clc09G14130 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G14130
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTy3/gypsy retrotransposon protein
Genome locationClcChr09:17010513..17011211
RNA-Seq ExpressionClc09G14130
SyntenyClc09G14130
Gene Ontology termsNA
InterPro domainsIPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040538.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]3.2e-2640.39Show/hide
Query:  FKVVFGQDPPPLLGLENYDTTNGILE-QLMERDRLLMALKENSLMAQNRMKKFAALNRRELE--------------------------------------
        FK V+G+ PPPLL   +  TTN  +E  L ERD  L ALKEN  +AQNRMKKFA L RREL+                                      
Subjt:  FKVVFGQDPPPLLGLENYDTTNGILE-QLMERDRLLMALKENSLMAQNRMKKFAALNRRELE--------------------------------------

Query:  ------FEEDLLMEFAIHPIYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHLE
              +  DL  E AIH ++H+SQLK  +G   +VQ ++P + ++FE  + P  VL +RWN+     E LI W G  E DA WESV +M  QF  FHLE
Subjt:  ------FEEDLLMEFAIHPIYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHLE

Query:  DKV
        DKV
Subjt:  DKV

KAA0047079.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.8e-2845.51Show/hide
Query:  FKVVFGQDPPPLLGLENYDTTNGIL-EQLMERDRLLMALKENSLMAQNRMKKFAALNRRELEFEEDLLMEF--------AIHPIYHVSQLKRAIGDHVLV
        F+ V+G+ PPPL+   + +T N  L +QL +RD  L ALKE+  +AQ RMKK A   RRE+EF+E  L+ +        AIHP++HVSQLK+ +G    V
Subjt:  FKVVFGQDPPPLLGLENYDTTNGIL-EQLMERDRLLMALKENSLMAQNRMKKFAALNRRELEFEEDLLMEF--------AIHPIYHVSQLKRAIGDHVLV

Query:  Q-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHLEDKV
        Q  NP +  + EW+  P +V + R N    +WEALI+W G    +A WES   M+ QF DFHLEDKV
Subjt:  Q-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHLEDKV

TYK04121.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]5.5e-2639.71Show/hide
Query:  FKVVFGQDPPPLLGLENYDTTNGILEQLM-ERDRLLMALKENSLMAQNRMKKFAALNRRELE--------------------------------------
        F+ V+G+ PPPLL   +  TTN  +E L+ ERD  L ALKEN  +AQNRMKKFA L RREL+                                      
Subjt:  FKVVFGQDPPPLLGLENYDTTNGILEQLM-ERDRLLMALKENSLMAQNRMKKFAALNRRELE--------------------------------------

Query:  -------FEEDLLMEFAIHPIYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHL
               +  DL  E AIH ++H+SQLK  +G   +VQ ++P + ++FE  + P  VL +RWN+     E LI W G  E DA WESV +M  QF  FHL
Subjt:  -------FEEDLLMEFAIHPIYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHL

Query:  EDKV
        EDKV
Subjt:  EDKV

TYK05078.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.8e-2845.51Show/hide
Query:  FKVVFGQDPPPLLGLENYDTTNGIL-EQLMERDRLLMALKENSLMAQNRMKKFAALNRRELEFEEDLLMEF--------AIHPIYHVSQLKRAIGDHVLV
        F+ V+G+ PPPL+   + +T N  L +QL +RD  L ALKE+  +AQ RMKK A   RRE+EF+E  L+ +        AIHP++HVSQLK+ +G    V
Subjt:  FKVVFGQDPPPLLGLENYDTTNGIL-EQLMERDRLLMALKENSLMAQNRMKKFAALNRRELEFEEDLLMEF--------AIHPIYHVSQLKRAIGDHVLV

Query:  Q-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHLEDKV
        Q  NP +  + EW+  P +V + R N    +WEALI+W G    +A WES   M+ QF DFHLEDKV
Subjt:  Q-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHLEDKV

TYK08087.1 disease resistance protein [Cucumis melo var. makuwa]7.1e-2639.22Show/hide
Query:  FKVVFGQDPPPLLGLENYDTTNGILE-QLMERDRLLMALKENSLMAQNRMKKFAALNRRELE--------------------------------------
        F+ V+G+ PPPLL   +  TTN  +E  L ERD  L ALKEN  +AQNRMKKFA L RREL+                                      
Subjt:  FKVVFGQDPPPLLGLENYDTTNGILE-QLMERDRLLMALKENSLMAQNRMKKFAALNRRELE--------------------------------------

Query:  -------FEEDLLMEFAIHPIYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHL
               ++ DL  E AIH ++H+SQLK  +G   +VQ ++P + ++FE  + P  VL +RWN+     E L+ W G  E DA WESV +M  QF  FHL
Subjt:  -------FEEDLLMEFAIHPIYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHL

Query:  EDKV
        EDKV
Subjt:  EDKV

TrEMBL top hitse value%identityAlignment
A0A5A7TCB1 Retrotransposable element Tf21.6e-2640.39Show/hide
Query:  FKVVFGQDPPPLLGLENYDTTNGILE-QLMERDRLLMALKENSLMAQNRMKKFAALNRRELE--------------------------------------
        FK V+G+ PPPLL   +  TTN  +E  L ERD  L ALKEN  +AQNRMKKFA L RREL+                                      
Subjt:  FKVVFGQDPPPLLGLENYDTTNGILE-QLMERDRLLMALKENSLMAQNRMKKFAALNRRELE--------------------------------------

Query:  ------FEEDLLMEFAIHPIYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHLE
              +  DL  E AIH ++H+SQLK  +G   +VQ ++P + ++FE  + P  VL +RWN+     E LI W G  E DA WESV +M  QF  FHLE
Subjt:  ------FEEDLLMEFAIHPIYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHLE

Query:  DKV
        DKV
Subjt:  DKV

A0A5A7U0S0 Ty3/gypsy retrotransposon protein2.8e-2845.51Show/hide
Query:  FKVVFGQDPPPLLGLENYDTTNGIL-EQLMERDRLLMALKENSLMAQNRMKKFAALNRRELEFEEDLLMEF--------AIHPIYHVSQLKRAIGDHVLV
        F+ V+G+ PPPL+   + +T N  L +QL +RD  L ALKE+  +AQ RMKK A   RRE+EF+E  L+ +        AIHP++HVSQLK+ +G    V
Subjt:  FKVVFGQDPPPLLGLENYDTTNGIL-EQLMERDRLLMALKENSLMAQNRMKKFAALNRRELEFEEDLLMEF--------AIHPIYHVSQLKRAIGDHVLV

Query:  Q-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHLEDKV
        Q  NP +  + EW+  P +V + R N    +WEALI+W G    +A WES   M+ QF DFHLEDKV
Subjt:  Q-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHLEDKV

A0A5D3BWN1 Retrotransposable element Tf22.6e-2639.71Show/hide
Query:  FKVVFGQDPPPLLGLENYDTTNGILEQLM-ERDRLLMALKENSLMAQNRMKKFAALNRRELE--------------------------------------
        F+ V+G+ PPPLL   +  TTN  +E L+ ERD  L ALKEN  +AQNRMKKFA L RREL+                                      
Subjt:  FKVVFGQDPPPLLGLENYDTTNGILEQLM-ERDRLLMALKENSLMAQNRMKKFAALNRRELE--------------------------------------

Query:  -------FEEDLLMEFAIHPIYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHL
               +  DL  E AIH ++H+SQLK  +G   +VQ ++P + ++FE  + P  VL +RWN+     E LI W G  E DA WESV +M  QF  FHL
Subjt:  -------FEEDLLMEFAIHPIYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHL

Query:  EDKV
        EDKV
Subjt:  EDKV

A0A5D3C1D4 Ty3/gypsy retrotransposon protein2.8e-2845.51Show/hide
Query:  FKVVFGQDPPPLLGLENYDTTNGIL-EQLMERDRLLMALKENSLMAQNRMKKFAALNRRELEFEEDLLMEF--------AIHPIYHVSQLKRAIGDHVLV
        F+ V+G+ PPPL+   + +T N  L +QL +RD  L ALKE+  +AQ RMKK A   RRE+EF+E  L+ +        AIHP++HVSQLK+ +G    V
Subjt:  FKVVFGQDPPPLLGLENYDTTNGIL-EQLMERDRLLMALKENSLMAQNRMKKFAALNRRELEFEEDLLMEF--------AIHPIYHVSQLKRAIGDHVLV

Query:  Q-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHLEDKV
        Q  NP +  + EW+  P +V + R N    +WEALI+W G    +A WES   M+ QF DFHLEDKV
Subjt:  Q-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHLEDKV

A0A5D3C7Z4 Disease resistance protein3.5e-2639.22Show/hide
Query:  FKVVFGQDPPPLLGLENYDTTNGILE-QLMERDRLLMALKENSLMAQNRMKKFAALNRRELE--------------------------------------
        F+ V+G+ PPPLL   +  TTN  +E  L ERD  L ALKEN  +AQNRMKKFA L RREL+                                      
Subjt:  FKVVFGQDPPPLLGLENYDTTNGILE-QLMERDRLLMALKENSLMAQNRMKKFAALNRRELE--------------------------------------

Query:  -------FEEDLLMEFAIHPIYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHL
               ++ DL  E AIH ++H+SQLK  +G   +VQ ++P + ++FE  + P  VL +RWN+     E L+ W G  E DA WESV +M  QF  FHL
Subjt:  -------FEEDLLMEFAIHPIYHVSQLKRAIGDHVLVQ-RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHL

Query:  EDKV
        EDKV
Subjt:  EDKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCAAACTCTGGTACAATACGAATTTCCATGCTTCGATCCAGACTGCTCCTTTAAGGTTGTTTTCGGGCAAGATCCTCCCCCTTTGTTGGGTTTAGAAAATTATGA
TACGACAAACGGCATATTGGAACAACTCATGGAACGCGACCGATTGTTGATGGCATTGAAAGAAAATTCGCTGATGGCTCAGAATAGAATGAAAAAGTTTGCAGCCTTGA
ATCGAAGGGAGCTTGAATTTGAAGAAGATCTACTGATGGAGTTCGCCATCCACCCTATTTACCACGTTTCACAGCTTAAGCGGGCCATTGGAGATCACGTCCTGGTTCAG
CGGAATCCTCGTGTTTTAGATGATTTTGAATGGGTTATTACCCCGGCCAAAGTGTTAGCAGTGCGATGGAATGAGGTTGAAGCGAAATGGGAGGCCCTGATCGCTTGGCA
CGGGCAAGCGGAGTGTGATGCCATTTGGGAATCAGTCCCTCGCATGCAATGCCAGTTCTCGGATTTTCACCTTGAGGACAAGGTGGCTTCAAAAGGAGGGGTATTGTTAG
GCCCCCGATGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCCAAACTCTGGTACAATACGAATTTCCATGCTTCGATCCAGACTGCTCCTTTAAGGTTGTTTTCGGGCAAGATCCTCCCCCTTTGTTGGGTTTAGAAAATTATGA
TACGACAAACGGCATATTGGAACAACTCATGGAACGCGACCGATTGTTGATGGCATTGAAAGAAAATTCGCTGATGGCTCAGAATAGAATGAAAAAGTTTGCAGCCTTGA
ATCGAAGGGAGCTTGAATTTGAAGAAGATCTACTGATGGAGTTCGCCATCCACCCTATTTACCACGTTTCACAGCTTAAGCGGGCCATTGGAGATCACGTCCTGGTTCAG
CGGAATCCTCGTGTTTTAGATGATTTTGAATGGGTTATTACCCCGGCCAAAGTGTTAGCAGTGCGATGGAATGAGGTTGAAGCGAAATGGGAGGCCCTGATCGCTTGGCA
CGGGCAAGCGGAGTGTGATGCCATTTGGGAATCAGTCCCTCGCATGCAATGCCAGTTCTCGGATTTTCACCTTGAGGACAAGGTGGCTTCAAAAGGAGGGGTATTGTTAG
GCCCCCGATGTTGA
Protein sequenceShow/hide protein sequence
MGQTLVQYEFPCFDPDCSFKVVFGQDPPPLLGLENYDTTNGILEQLMERDRLLMALKENSLMAQNRMKKFAALNRRELEFEEDLLMEFAIHPIYHVSQLKRAIGDHVLVQ
RNPRVLDDFEWVITPAKVLAVRWNEVEAKWEALIAWHGQAECDAIWESVPRMQCQFSDFHLEDKVASKGGVLLGPRC