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Clc09G14255 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G14255
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTy3/gypsy retrotransposon protein
Genome locationClcChr09:17780091..17780441
RNA-Seq ExpressionClc09G14255
SyntenyClc09G14255
Gene Ontology termsGO:0071897 - DNA biosynthetic process (biological process)
GO:0005488 - binding (molecular function)
GO:0034061 - DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040609.1 DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa]7.6e-2654.78Show/hide
Query:  MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTM
        M F++ + Q+ LKGDPSLTK E SLKT+SKTWE ED+ FLIEFQ +EIE   EV     +   E     I+ LL +NR +FE+PK LPPKR +DH+I+  
Subjt:  MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTM

Query:  EGQPLVNVRPYKYGH
        EGQ  +N+RPYKYG+
Subjt:  EGQPLVNVRPYKYGH

KAA0062448.1 disease resistance protein [Cucumis melo var. makuwa]4.0e-2757.39Show/hide
Query:  MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTM
        M F++ + Q+ LKGDPSLTK E SLKT+SKTWE EDQ FLIEFQ +EIE   EV     +   E    MI+ LL +NR +FE+PK LPPKR +DH+I+  
Subjt:  MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTM

Query:  EGQPLVNVRPYKYGH
        EGQ  +NVRPYKYG+
Subjt:  EGQPLVNVRPYKYGH

TYJ98046.1 peroxidase 64 [Cucumis melo var. makuwa]1.5e-2656.52Show/hide
Query:  MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTM
        M F++ + Q+ LKGDPSL K E SLKT+SKTWE EDQ FLIEFQ +EIE   EV     +   E    MI+ LL +NR +FE+PK LPPKR +DH+I+  
Subjt:  MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTM

Query:  EGQPLVNVRPYKYGH
        EGQ  +NVRPYKYG+
Subjt:  EGQPLVNVRPYKYGH

TYK22651.1 reverse transcriptase [Cucumis melo var. makuwa]6.8e-2757.89Show/hide
Query:  FVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGD-EEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTME
        F+    Q+ LKGDPSLTK+E SLKT+SKTWE EDQ FL+EFQ +EI  D E+  +   + E+  LP M++ LL R R +FE PK LPPKR +DH+IVT+E
Subjt:  FVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGD-EEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTME

Query:  GQPLVNVRPYKYGH
        GQ  +NVRPYKYG+
Subjt:  GQPLVNVRPYKYGH

TYK27437.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.0e-2757.39Show/hide
Query:  MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTM
        M F++ + Q+ LKGDPSLTK E SLKT+SKTWE EDQ FLIEFQ +EIE   EV     +   E    MI+ LL +NR +FE+PK LPPKR +DH+I+  
Subjt:  MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTM

Query:  EGQPLVNVRPYKYGH
        EGQ  +NVRPYKYG+
Subjt:  EGQPLVNVRPYKYGH

TrEMBL top hitse value%identityAlignment
A0A5A7V4D8 Disease resistance protein1.9e-2757.39Show/hide
Query:  MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTM
        M F++ + Q+ LKGDPSLTK E SLKT+SKTWE EDQ FLIEFQ +EIE   EV     +   E    MI+ LL +NR +FE+PK LPPKR +DH+I+  
Subjt:  MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTM

Query:  EGQPLVNVRPYKYGH
        EGQ  +NVRPYKYG+
Subjt:  EGQPLVNVRPYKYGH

A0A5A7VHA7 Ty3/gypsy retrotransposon protein3.7e-2655.65Show/hide
Query:  MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTM
        M F++ + Q+ LKGDPSL K E SLKT+SKTWE EDQ FLI FQ +EIE   EV     +   E    MI+ LL +NR +FE+PK LPPKR +DH+I+  
Subjt:  MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTM

Query:  EGQPLVNVRPYKYGH
        EGQ  +NVRPYKYG+
Subjt:  EGQPLVNVRPYKYGH

A0A5D3BG24 Peroxidase 647.4e-2756.52Show/hide
Query:  MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTM
        M F++ + Q+ LKGDPSL K E SLKT+SKTWE EDQ FLIEFQ +EIE   EV     +   E    MI+ LL +NR +FE+PK LPPKR +DH+I+  
Subjt:  MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTM

Query:  EGQPLVNVRPYKYGH
        EGQ  +NVRPYKYG+
Subjt:  EGQPLVNVRPYKYGH

A0A5D3DG25 Reverse transcriptase3.3e-2757.89Show/hide
Query:  FVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGD-EEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTME
        F+    Q+ LKGDPSLTK+E SLKT+SKTWE EDQ FL+EFQ +EI  D E+  +   + E+  LP M++ LL R R +FE PK LPPKR +DH+IVT+E
Subjt:  FVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGD-EEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTME

Query:  GQPLVNVRPYKYGH
        GQ  +NVRPYKYG+
Subjt:  GQPLVNVRPYKYGH

A0A5D3DUJ0 Ty3/gypsy retrotransposon protein1.9e-2757.39Show/hide
Query:  MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTM
        M F++ + Q+ LKGDPSLTK E SLKT+SKTWE EDQ FLIEFQ +EIE   EV     +   E    MI+ LL +NR +FE+PK LPPKR +DH+I+  
Subjt:  MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTM

Query:  EGQPLVNVRPYKYGH
        EGQ  +NVRPYKYG+
Subjt:  EGQPLVNVRPYKYGH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTTGTGATGGATAATAAGCAAATTACTTTGAAGGGGGACCCCTCCCTCACGAAATTGGAAGTATCGTTGAAAACCATGAGCAAGACTTGGGAAGCGGAAGATCA
ACGATTCCTAATTGAGTTTCAAAATTTGGAGATTGAGGGGGATGAGGAAGTAGGTCAAGGGGGAACCAAAATCGAAAGGGAACCTTTACCAGTGATGATACAAACTCTAT
TGGGAAGGAATAGAGATGTTTTTGAAATTCCCAAGAAATTGCCACCCAAAAGGGAAATTGATCACAAAATCGTAACCATGGAAGGGCAACCTCTGGTGAATGTTCGCCCC
TACAAATACGGGCATGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCATTTGTGATGGATAATAAGCAAATTACTTTGAAGGGGGACCCCTCCCTCACGAAATTGGAAGTATCGTTGAAAACCATGAGCAAGACTTGGGAAGCGGAAGATCA
ACGATTCCTAATTGAGTTTCAAAATTTGGAGATTGAGGGGGATGAGGAAGTAGGTCAAGGGGGAACCAAAATCGAAAGGGAACCTTTACCAGTGATGATACAAACTCTAT
TGGGAAGGAATAGAGATGTTTTTGAAATTCCCAAGAAATTGCCACCCAAAAGGGAAATTGATCACAAAATCGTAACCATGGAAGGGCAACCTCTGGTGAATGTTCGCCCC
TACAAATACGGGCATGCCTAG
Protein sequenceShow/hide protein sequence
MSFVMDNKQITLKGDPSLTKLEVSLKTMSKTWEAEDQRFLIEFQNLEIEGDEEVGQGGTKIEREPLPVMIQTLLGRNRDVFEIPKKLPPKREIDHKIVTMEGQPLVNVRP
YKYGHA