CuGenDBv2

Gene ID	Clc09G14435
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	ATP synthase subunit alpha, chloroplastic
Genome location	ClcChr09:18425791..18430144
RNA-Seq Expression	Clc09G14435
Synteny	Clc09G14435
Gene Ontology terms	GO:0000956 - nuclear-transcribed mRNA catabolic process (biological process) GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0000932 - P-body (cellular component) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	IPR023366 - ATP synthase subunit alpha, N-terminal domain-like superfamily IPR036121 - ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF2300939.1 hypothetical protein GH714_018446 [Hevea brasiliensis]

1.9e-07

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Query:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKK
        +YN+EVKIVNTG V QVGDDIARIYGLDEVM  ELVEF++
Subjt:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKK

KAF9617320.1 hypothetical protein IFM89_035301 [Coptis chinensis]

2.2e-08

43.62

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Query:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKK----VLAQAMLDGLGLVVDQDLEVAAM--------PHTSSSQQSSLYIFSGDGR
        +YN+EVKIVNTG VHQVGD IARI+GLDEVM  ELVEF++    +      + +G+V+  D E++A+        P   + +Q SL +    G+
Subjt:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKK----VLAQAMLDGLGLVVDQDLEVAAM--------PHTSSSQQSSLYIFSGDGR

KHN43661.1 ATP synthase subunit alpha, chloroplastic [Glycine soja]

1.1e-07

82.5

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Query:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKK
        +YN EVKIVNTG V QVGDDIARIYGLDEVMT ELVEF++
Subjt:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKK

KJB23708.1 hypothetical protein B456_004G111300 [Gossypium raimondii]

1.9e-07

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Query:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKK
        +YN+EVKIVNTG V QVGDDIARI+GLDEVMT ELVEF++
Subjt:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKK

XP_040861427.1 ATP synthase subunit alpha, chloroplastic-like [Glycine max]

6.5e-08

47.37

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Query:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVL-----------AQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFSGDGRVI
        +YN EVKIVNTG V QVGDDIARIYGLDEVMT ELVEF++                +L G GL++ +   V A    +    S  Y+    GRVI
Subjt:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVL-----------AQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFSGDGRVI

TrEMBL top hits

e value

%identity

Alignment

A0A0B2SA77 ATP synthase subunit alpha, chloroplastic

5.4e-08

82.5

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Query:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKK
        +YN EVKIVNTG V QVGDDIARIYGLDEVMT ELVEF++
Subjt:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKK

A0A0D2PA20 ATP synthase subunit alpha, mitochondrial

9.2e-08

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Query:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKK
        +YN+EVKIVNTG V QVGDDIARI+GLDEVMT ELVEF++
Subjt:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKK

A0A445J241 ATP synthase subunit alpha, chloroplastic

3.1e-08

47.37

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Query:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVL-----------AQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFSGDGRVI
        +YN EVKIVNTG V QVGDDIARIYGLDEVMT ELVEF++                +L G GL++ +   V A    +    S  Y+    GRVI
Subjt:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVL-----------AQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFSGDGRVI

A0A6A6LMU7 Sm domain-containing protein

9.2e-08

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Query:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKK
        +YN+EVKIVNTG V QVGDDIARIYGLDEVM  ELVEF++
Subjt:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKK

K7LEG0 ATP-synt_ab_N domain-containing protein

3.1e-08

47.37

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Query:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVL-----------AQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFSGDGRVI
        +YN EVKIVNTG V QVGDDIARIYGLDEVMT ELVEF++                +L G GL++ +   V A    +    S  Y+    GRVI
Subjt:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVL-----------AQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFSGDGRVI

SwissProt top hits

e value

%identity

Alignment

B0Z4N2 ATP synthase subunit alpha, chloroplastic

7.2e-10

45.26

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Query:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVL-----------AQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFSGDGRVI
        +YN+EVKIVNTG V QVGD IARIYGLDEVM  ELVEF++                +L G GL++ +   V A    +    S  Y+    GRVI
Subjt:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVL-----------AQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFSGDGRVI

B0Z4W6 ATP synthase subunit alpha, chloroplastic

7.2e-10

45.26

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Query:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVL-----------AQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFSGDGRVI
        +YN+EVKIVNTG V QVGD IARIYGLDEVM  ELVEF++                +L G GL++ +   V A    +    S  Y+    GRVI
Subjt:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVL-----------AQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFSGDGRVI

B1NWD5 ATP synthase subunit alpha, chloroplastic

7.2e-10

45.26

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Query:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVL-----------AQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFSGDGRVI
        +YN+EVKIVNTG V QVGD IARIYGLDEVM  ELVEF++                +L G GL++ +   V A    +    S  Y+    GRVI
Subjt:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVL-----------AQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFSGDGRVI

Q49L13 ATP synthase subunit alpha, chloroplastic

7.2e-10

45.26

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Query:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVL-----------AQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFSGDGRVI
        +YN+EVKIVNTG V QVGD IARIYGLDEVM  ELVEF++                +L G GL++ +   V A    +    S  Y+    GRVI
Subjt:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVL-----------AQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFSGDGRVI

Q9MTL7 ATP synthase subunit alpha, chloroplastic

7.2e-10

45.26

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Query:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVL-----------AQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFSGDGRVI
        +YN+EVKIVNTG V QVGD IARIYGLDEVM  ELVEF++                +L G GL++ +   V A    +    S  Y+    GRVI
Subjt:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVL-----------AQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFSGDGRVI

Arabidopsis top hits

e value

%identity

Alignment

ATCG00120.1 ATP synthase subunit alpha

3.3e-10

44.21

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Query:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVL-----------AQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFSGDGRVI
        +YN+EV IVNTG V QVGD IARIYGLDEVM  ELVEF++                +L G GL++ +   V A    +    S  Y+    GRVI
Subjt:  EYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVL-----------AQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFSGDGRVI

Sequences

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CDS sequence

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ATGGGTGTGGAGGTAAGGTTATCCCATTCAATGTGTGATAAAGGGACGGAGACAATGATAGATTCTTTGTTTGGATGTGATAGGAGATGGGTGGATGATAATTTGAAGCT
ATCGAATGAGGAGTTTAAGATAGCATGCATTAGGGCTTGGGTGATTTGGGTCAGATGCCCACTAATGAGGTTACTTGTTCGAATCCCTTTTGAGGTAAAGGGTATGTTTG
TTTTGTTTGTTGATGTTGCTTGTCATGAAGTGGAGGAAAGATATGGGTTCAGAGTGGTTTTATTGGCTAAGGACTCCAGTTTGAGGGCTACGAAATATGGGTTTAGGGAG
TGTCGAAATAGGTCGAGAATCCAAAATGACGTCCCAAAGACGCTGCTTTGCCACAGATCCACTCTGGTTTCATCCCGAACTTCTATAATGCTATTTGAATATAATAAAGA
AGTCAAAATTGTAAATACCGGTCTTGTACATCAAGTAGGCGACGACATTGCTCGTATTTATGGTCTTGATGAAGTAATGACAAGTGAATTAGTAGAATTTAAAAAGGTTC
TGGCACAAGCCATGCTGGATGGTTTAGGCTTAGTTGTTGATCAAGATCTAGAGGTGGCGGCCATGCCTCATACAAGCTCATCTCAGCAATCATCATTGTATATTTTCTCT
GGCGATGGTCGGGTCATTACAAGAGAAAAGGCCTGTCCACCCAAAACTATAAAAAACATTGCTGAAGCAGGTATCAGTGCCGACTCATTGACAAAGGCAGCTGAGGAAGT
TACAAACTCTGAATATGTTAAATGGGTTGTTGCAGATCAATTCCTCCTCGGGTGGCTTTACAACTCAATGACGTCAGAGATAGCCATCCAAACTCGTAAGGGTTCCCTGA
AAATGGAAGAGTATTTATCAAAAATGAAGAAATATGCTGTTGGCTTGGCTCTTACTGGGAGTGCCCTATTGATAGCTGACCTGGTCTTTCAGCTCCCTAAAGAAGCTATT
TATCTCGGCCTAAATCTAGTTAGTTCACGAAAATTTAATGTTTATTCTAGTGATTTTGATAGGAAAGCAAGCAAAGAAGGCTATCGGGACCTCCCGGATGAAATTTGGTG
CCCCGGCGTTGAAGACCCGAGAGCAACATTTTTGGGAGTTTCTAGGCTCTCCAACCATCAGACGCGCACACAGATAGGCACTACTAGACACCTGGGCAGGCGTTTCAATT
AG

mRNA sequence

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Protein sequence

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MGVEVRLSHSMCDKGTETMIDSLFGCDRRWVDDNLKLSNEEFKIACIRAWVIWVRCPLMRLLVRIPFEVKGMFVLFVDVACHEVEERYGFRVVLLAKDSSLRATKYGFRE
CRNRSRIQNDVPKTLLCHRSTLVSSRTSIMLFEYNKEVKIVNTGLVHQVGDDIARIYGLDEVMTSELVEFKKVLAQAMLDGLGLVVDQDLEVAAMPHTSSSQQSSLYIFS
GDGRVITREKACPPKTIKNIAEAGISADSLTKAAEEVTNSEYVKWVVADQFLLGWLYNSMTSEIAIQTRKGSLKMEEYLSKMKKYAVGLALTGSALLIADLVFQLPKEAI
YLGLNLVSSRKFNVYSSDFDRKASKEGYRDLPDEIWCPGVEDPRATFLGVSRLSNHQTRTQIGTTRHLGRRFN

Clc09G14435 (gene) of Watermelon (cordophanus) v2 genome