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Clc09G14460 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G14460
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptioncleavage and polyadenylation specificity factor subunit 1
Genome locationClcChr09:18689759..18693217
RNA-Seq ExpressionClc09G14460
SyntenyClc09G14460
Gene Ontology termsGO:0006378 - mRNA polyadenylation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003684 - damaged DNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR015943 - WD40/YVTN repeat-like-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049898.1 cleavage and polyadenylation specificity factor subunit 1 isoform X3 [Cucumis melo var. makuwa]2.6e-3896.2Show/hide
Query:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP
        LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAP  +P
Subjt:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP

TYK07640.1 cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Cucumis melo var. makuwa]2.0e-38100Show/hide
Query:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSS
        LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSS
Subjt:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSS

XP_016899512.1 PREDICTED: cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Cucumis melo]2.6e-3896.2Show/hide
Query:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP
        LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAP  +P
Subjt:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP

XP_038887722.1 cleavage and polyadenylation specificity factor subunit 1 isoform X1 [Benincasa hispida]2.6e-3896.2Show/hide
Query:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP
        LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAP  +P
Subjt:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP

XP_038887723.1 cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Benincasa hispida]2.6e-3896.2Show/hide
Query:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP
        LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAP  +P
Subjt:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP

TrEMBL top hitse value%identityAlignment
A0A1S3B4E8 cleavage and polyadenylation specificity factor subunit 1 isoform X11.3e-3896.2Show/hide
Query:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP
        LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAP  +P
Subjt:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP

A0A1S4DU39 cleavage and polyadenylation specificity factor subunit 1 isoform X21.3e-3896.2Show/hide
Query:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP
        LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAP  +P
Subjt:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP

A0A1S4DU68 cleavage and polyadenylation specificity factor subunit 1 isoform X31.3e-3896.2Show/hide
Query:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP
        LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAP  +P
Subjt:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP

A0A5A7U3R4 Cleavage and polyadenylation specificity factor subunit 1 isoform X31.3e-3896.2Show/hide
Query:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP
        LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAP  +P
Subjt:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP

A0A5D3C8H0 Cleavage and polyadenylation specificity factor subunit 1 isoform X29.7e-39100Show/hide
Query:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSS
        LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSS
Subjt:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSS

SwissProt top hitse value%identityAlignment
Q10569 Cleavage and polyadenylation specificity factor subunit 11.1e-1246.48Show/hide
Query:  DGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIIS
        DGPI +F   HN+NC  G +Y   QG L+I  LP+  +YD  WPV+K+PL+ T H V Y  E  +Y V  S
Subjt:  DGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIIS

Q10570 Cleavage and polyadenylation specificity factor subunit 11.1e-1246.48Show/hide
Query:  DGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIIS
        DGP+ +F   HNVNC  G +Y   QG L+I  LP+  +YD  WPV+K+PL+ T H V Y  E  +Y V  S
Subjt:  DGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIIS

Q7XWP1 Probable cleavage and polyadenylation specificity factor subunit 15.8e-3378.48Show/hide
Query:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP
        LCDGPI AFTVLHNVNC+HG IYVTSQG LKICQLPS  NYD+YWPVQKVPL GTPHQVTY+ E++LYP+I+S P  RP
Subjt:  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP

Q9EPU4 Cleavage and polyadenylation specificity factor subunit 18.8e-1347.89Show/hide
Query:  DGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIIS
        DGPI +F   HNVNC  G +Y   QG L+I  LP+  +YD  WPV+K+PL+ T H V Y  E  +Y V  S
Subjt:  DGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIIS

Q9FGR0 Cleavage and polyadenylation specificity factor subunit 12.1e-3576.67Show/hide
Query:  LGRESARF--DLCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP
        L RE  RF   LCDG I AFTVLHNVNCNHG IYVT+QGVLKICQLPS S YDNYWPVQK+PLK TPHQVTY+ EKNLYP+I+S P S+P
Subjt:  LGRESARF--DLCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP

Arabidopsis top hitse value%identityAlignment
AT5G51660.1 cleavage and polyadenylation specificity factor 1601.5e-3676.67Show/hide
Query:  LGRESARF--DLCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP
        L RE  RF   LCDG I AFTVLHNVNCNHG IYVT+QGVLKICQLPS S YDNYWPVQK+PLK TPHQVTY+ EKNLYP+I+S P S+P
Subjt:  LGRESARF--DLCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCATCGACCTTGTTTTTTTATCAGGGGAGATCTTGTCTGGAATAACTTCACAATGTCTTTTCCAAATGAATCGAATGTTGTCAATTTTTCTTGGTGCTCCTCAGG
GTCACATTGCTCAATTTCATCGCTGCTTGCACTAACTATTGACTCAACTTCCGCATCTGAATGCTCTGGACTTGGTCGAGAATCAGCGCGATTTGATCTATGTGATGGAC
CCATTGTTGCCTTTACAGTGCTACATAATGTGAACTGTAACCATGGACTTATATATGTCACATCACAGGGTGTTCTGAAGATTTGTCAACTTCCATCGACATCAAACTAC
GATAATTACTGGCCGGTACAGAAAGTTCCACTGAAAGGAACTCCACACCAGGTCACCTACTTCCATGAAAAGAATCTGTACCCGGTTATAATTTCAGCGCCTAGTTCGAG
GCCTGGAGTTCACAGTAGAATTCTCTTTGATTGTCTTTTTTCTTTTTCGGTTCCATATGAACTAATGACTTATTCTTGTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCATCGACCTTGTTTTTTTATCAGGGGAGATCTTGTCTGGAATAACTTCACAATGTCTTTTCCAAATGAATCGAATGTTGTCAATTTTTCTTGGTGCTCCTCAGG
GTCACATTGCTCAATTTCATCGCTGCTTGCACTAACTATTGACTCAACTTCCGCATCTGAATGCTCTGGACTTGGTCGAGAATCAGCGCGATTTGATCTATGTGATGGAC
CCATTGTTGCCTTTACAGTGCTACATAATGTGAACTGTAACCATGGACTTATATATGTCACATCACAGGGTGTTCTGAAGATTTGTCAACTTCCATCGACATCAAACTAC
GATAATTACTGGCCGGTACAGAAAGTTCCACTGAAAGGAACTCCACACCAGGTCACCTACTTCCATGAAAAGAATCTGTACCCGGTTATAATTTCAGCGCCTAGTTCGAG
GCCTGGAGTTCACAGTAGAATTCTCTTTGATTGTCTTTTTTCTTTTTCGGTTCCATATGAACTAATGACTTATTCTTGTGAATGA
Protein sequenceShow/hide protein sequence
MRHRPCFFIRGDLVWNNFTMSFPNESNVVNFSWCSSGSHCSISSLLALTIDSTSASECSGLGRESARFDLCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNY
DNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRPGVHSRILFDCLFSFSVPYELMTYSCE