CuGenDBv2

Gene ID	Clc09G14510
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	mediator of RNA polymerase II transcription subunit 15a
Genome location	ClcChr09:19008170..19010196
RNA-Seq Expression	Clc09G14510
Synteny	Clc09G14510
Gene Ontology terms	GO:0003713 - transcription coactivator activity (molecular function) GO:0031490 - chromatin DNA binding (molecular function)
InterPro domains	IPR036546 - Mediator complex subunit 15, KIX domain IPR044661 - Mediator of RNA polymerase II transcription subunit 15a/b/c-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6571702.1 Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia]

1.0e-30

53.89

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Query:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL-------------------------CLWIL--------------
        MDTNNWRPT GGEP IEAGDWRSQL PDSRQRI NKIM  LK HLPVS  EGLSEL                          L +L              
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL-------------------------CLWIL--------------

Query:  --HPKACSLK-------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM
          +P   S K             LNQGQSIS+PQSSNQPQ  QQLLSQ IQNNIVSQSSSSL SA P V+G A+SS+ NM
Subjt:  --HPKACSLK-------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM

KAG7011427.1 Mediator of RNA polymerase II transcription subunit 15a [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-30

53.89

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Query:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL-------------------------CLWIL--------------
        MDTNNWRPT GGEP IEAGDWRSQL PDSRQRI NKIM  LK HLPVS  EGLSEL                          L +L              
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL-------------------------CLWIL--------------

Query:  --HPKACSLK-------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM
          +P   S K             LNQGQSIS+PQSSNQPQ  QQLLSQ IQNNIVSQSSSSL SA P V+G A+SS+ NM
Subjt:  --HPKACSLK-------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM

XP_022963528.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata]

1.0e-30

53.89

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Query:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL-------------------------CLWIL--------------
        MDTNNWRPT GGEP IEAGDWRSQL PDSRQRI NKIM  LK HLPVS  EGLSEL                          L +L              
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL-------------------------CLWIL--------------

Query:  --HPKACSLK-------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM
          +P   S K             LNQGQSIS+PQSSNQPQ  QQLLSQ IQNNIVSQSSSSL SA P V+G A+SS+ NM
Subjt:  --HPKACSLK-------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM

XP_023553730.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo]

1.0e-30

53.89

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Query:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL-------------------------CLWIL--------------
        MDTNNWRPT GGEP IEAGDWRSQL PDSRQRI NKIM  LK HLPVS  EGLSEL                          L +L              
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL-------------------------CLWIL--------------

Query:  --HPKACSLK-------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM
          +P   S K             LNQGQSIS+PQSSNQPQ  QQLLSQ IQNNIVSQSSSSL SA P V+G A+SS+ NM
Subjt:  --HPKACSLK-------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM

XP_038887614.1 mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida]

1.3e-30

52.22

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Query:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSELCLWIL---------------HPKACSLK----------------
        MD NNWRPT G EP IEAGDWRSQL PDSRQRI NKIM  LK HLPVS QEGLSEL    +               + +  SLK                
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSELCLWIL---------------HPKACSLK----------------

Query:  -----------------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM
                               LN GQS+S+PQSSNQPQ  QQ+LSQ IQNNIVSQSSSSLSSA P VAG A+SS+SNM
Subjt:  -----------------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C0H1 mediator of RNA polymerase II transcription subunit 15a

4.7e-26

49.43

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Query:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSELCLWIL---------------HPKACSLKL---------------
        MD NNWRPT GGEP +EAGDWRSQL PDSR RI NKIM  LK HLPVS QEGLSEL    +               + +  SLK+               
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSELCLWIL---------------HPKACSLKL---------------

Query:  ------------------NQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM
                           Q  SIS+PQSSNQ Q  QQ++ Q I NNIV QSSSSLSSA P VAG A SS+SNM
Subjt:  ------------------NQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM

A0A5D3C6P8 Mediator of RNA polymerase II transcription subunit 15a

4.7e-26

49.43

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Query:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSELCLWIL---------------HPKACSLKL---------------
        MD NNWRPT GGEP +EAGDWRSQL PDSR RI NKIM  LK HLPVS QEGLSEL    +               + +  SLK+               
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSELCLWIL---------------HPKACSLKL---------------

Query:  ------------------NQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM
                           Q  SIS+PQSSNQ Q  QQ++ Q I NNIV QSSSSLSSA P VAG A SS+SNM
Subjt:  ------------------NQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM

A0A6J1DNN0 mediator of RNA polymerase II transcription subunit 15a

2.3e-20

44.07

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Query:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSELCLWIL---------------HPKACSLKL---------------
        MDT+NWRP  GGEP +++GDWRSQL  DSRQRI NKIM  LK HLPVS  EGLSEL    +               + +  SLK+               
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSELCLWIL---------------HPKACSLKL---------------

Query:  -------------NQGQSI--------SIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM
                        QS+        ++P SSNQPQ  QQLLSQ IQN I  QSSSSL SA P V G A SS+  M
Subjt:  -------------NQGQSI--------SIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM

A0A6J1HI15 mediator of RNA polymerase II transcription subunit 15a-like isoform X1

4.9e-31

53.89

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Query:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL-------------------------CLWIL--------------
        MDTNNWRPT GGEP IEAGDWRSQL PDSRQRI NKIM  LK HLPVS  EGLSEL                          L +L              
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL-------------------------CLWIL--------------

Query:  --HPKACSLK-------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM
          +P   S K             LNQGQSIS+PQSSNQPQ  QQLLSQ IQNNIVSQSSSSL SA P V+G A+SS+ NM
Subjt:  --HPKACSLK-------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM

A0A6J1HR60 mediator of RNA polymerase II transcription subunit 15a-like isoform X1

9.2e-30

52.78

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Query:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL-------------------------CLWIL--------------
        MDTNNWRPT GGEP IE GDWRSQL PDSRQRI NKIM  LK HLPVS  EGLSEL                          L +L              
Subjt:  MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL-------------------------CLWIL--------------

Query:  --HPKACSLK-------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM
          +P   S K             LNQGQSIS+PQ SNQPQ  QQLLSQ IQNNIVSQSSSSL SA P V+G A+SS+ NM
Subjt:  --HPKACSLK-------------LNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSSAAPLVAGFATSSVSNM

SwissProt top hits

e value

%identity

Alignment

F4I171 Mediator of RNA polymerase II transcription subunit 15a

8.9e-14

34.29

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Query:  MDTNNWRPT-HGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL---------------------------CLWILHPKA-------
        MD NNWRP+   GEP ++ GDWR+QL PDSRQ+I NKIM  LK HLP S  EG++EL                            +  +  K+       
Subjt:  MDTNNWRPT-HGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL---------------------------CLWILHPKA-------

Query:  ------------CSLKLNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVS--QSSSSLSSAAPLVAGFATSSVSNM
                     S+  NQGQ +    S+NQ Q  Q LLSQ +QNN  S    S++L S+ P V+    ++ +++
Subjt:  ------------CSLKLNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVS--QSSSSLSSAAPLVAGFATSSVSNM

Arabidopsis top hits

e value

%identity

Alignment

AT1G15780.1 unknown protein

6.3e-15

34.29

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Query:  MDTNNWRPT-HGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL---------------------------CLWILHPKA-------
        MD NNWRP+   GEP ++ GDWR+QL PDSRQ+I NKIM  LK HLP S  EG++EL                            +  +  K+       
Subjt:  MDTNNWRPT-HGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL---------------------------CLWILHPKA-------

Query:  ------------CSLKLNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVS--QSSSSLSSAAPLVAGFATSSVSNM
                     S+  NQGQ +    S+NQ Q  Q LLSQ +QNN  S    S++L S+ P V+    ++ +++
Subjt:  ------------CSLKLNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVS--QSSSSLSSAAPLVAGFATSSVSNM

AT1G15790.1 unknown protein

2.7e-05

45.45

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Query:  EPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL
        EP +  GDWR+Q   DSRQ+  N ++  LK  +P S +EG+ EL
Subjt:  EPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL

AT1G15790.2 unknown protein

2.7e-05

45.45

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Query:  EPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL
        EP +  GDWR+Q   DSRQ+  N ++  LK  +P S +EG+ EL
Subjt:  EPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSEL

Sequences

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CDS sequence

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ATGGATACAAATAATTGGAGACCTACTCATGGTGGAGAACCCAAAATCGAAGCCGGGGATTGGAGATCTCAATTGCTACCCGATTCTCGACAACGAATTTTCAACAAAAT
AATGGGGAGATTGAAGGGGCACCTTCCTGTTTCTGATCAAGAGGGATTGAGTGAGCTATGCCTCTGGATTCTGCATCCCAAAGCATGCAGTCTCAAGTTAAACCAAGGAC
AGTCAATCTCTATCCCTCAGTCATCCAATCAGCCTCAGTTGTGCCAGCAACTACTCTCCCAGATAATCCAAAATAATATTGTTTCTCAGAGTTCATCCAGCTTATCTTCT
GCAGCACCTCTTGTCGCTGGATTTGCTACATCTTCAGTGTCAAACATGGCCACTGCAAGGAAGACAAGTTGTTCCCCAACAACAACAGCAGCAGCCACACTCCCAGCAAC
AGCAGCAGTAGCAGTTTCTTTATCAGCAACTACAGTTACAGCAGATGATGAAGCAAAAGTTTCGGAATCTGTCATGCAACCTTCAAGGTCACATGGGCAGCAGAGCGATC
TGTCAAACATGCAGTCTCCGCCATCGCAGCAGCAATAG

mRNA sequence

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Protein sequence

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MDTNNWRPTHGGEPKIEAGDWRSQLLPDSRQRIFNKIMGRLKGHLPVSDQEGLSELCLWILHPKACSLKLNQGQSISIPQSSNQPQLCQQLLSQIIQNNIVSQSSSSLSS
AAPLVAGFATSSVSNMATARKTSCSPTTTAAATLPATAAVAVSLSATTVTADDEAKVSESVMQPSRSHGQQSDLSNMQSPPSQQQ

Clc09G14510 (gene) of Watermelon (cordophanus) v2 genome