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Clc09G14600 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G14600
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTy3/gypsy retrotransposon protein
Genome locationClcChr09:19272255..19272650
RNA-Seq ExpressionClc09G14600
SyntenyClc09G14600
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037196.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-2948.84Show/hide
Query:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE
        MK++AD    +V+F   D+V+LK  PYR  S+  +RN+KL+PKYFGP+ +L+ +  +AYKL+ P  A IHPVFHVSQLKKA+G G T +SL   ++ N E
Subjt:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE

Query:  WELQPSSVLGIRQHSTTGTGDVLVHWKDL
        W  QP  V G R++ TT   + L+ WK L
Subjt:  WELQPSSVLGIRQHSTTGTGDVLVHWKDL

KAA0050511.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-2848.06Show/hide
Query:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE
        MK++AD    +V+F   D+V+LK  PYR  S+  +RN+KL+PKYFGP+ +L+ +  +AY+L+ P  A IHPVFHVSQLKKA+G G T  SLT  ++ N E
Subjt:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE

Query:  WELQPSSVLGIRQHSTTGTGDVLVHWKDL
        W  QP  V G R++ +T   + L+ WK L
Subjt:  WELQPSSVLGIRQHSTTGTGDVLVHWKDL

RVW83267.1 Transposon Tf2-12 polyprotein [Vitis vinifera]3.7e-2948.85Show/hide
Query:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE
        M+  AD H   VQF+V D VY+K CPYRL SL  R N+KL+P+YFGP+ ++Q + P+AY+L+ P S  IHPVFHVSQLK+A+G+ V    L+  L+ + E
Subjt:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE

Query:  WELQPSSVLGIRQHSTTG--TGDVLVHWKDL
        W ++P  VL IR+ S     + +VL+ WK L
Subjt:  WELQPSSVLGIRQHSTTG--TGDVLVHWKDL

TYK13876.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-2948.84Show/hide
Query:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE
        MK++AD    +V+F   D+V+LK  PYR  S+  +RN+KL+PKYFGP+ +L+ +  +AYKL+ P  A IHPVFHVSQLKKA+G G T +SL   ++ N E
Subjt:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE

Query:  WELQPSSVLGIRQHSTTGTGDVLVHWKDL
        W  QP  V G R++ TT   + L+ WK L
Subjt:  WELQPSSVLGIRQHSTTGTGDVLVHWKDL

TYK24654.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-2848.06Show/hide
Query:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE
        MK++AD    +V+F   D+V+LK  PYR  S+  +RN+KL+PKYFGP+ +L+ +  +AY+L+ P  A IHPVFHVSQLKKA+G G T  SLT  ++ N E
Subjt:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE

Query:  WELQPSSVLGIRQHSTTGTGDVLVHWKDL
        W  QP  V G R++ +T   + L+ WK L
Subjt:  WELQPSSVLGIRQHSTTGTGDVLVHWKDL

TrEMBL top hitse value%identityAlignment
A0A438HFP2 Transposon Tf2-12 polyprotein1.8e-2948.85Show/hide
Query:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE
        M+  AD H   VQF+V D VY+K CPYRL SL  R N+KL+P+YFGP+ ++Q + P+AY+L+ P S  IHPVFHVSQLK+A+G+ V    L+  L+ + E
Subjt:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE

Query:  WELQPSSVLGIRQHSTTG--TGDVLVHWKDL
        W ++P  VL IR+ S     + +VL+ WK L
Subjt:  WELQPSSVLGIRQHSTTG--TGDVLVHWKDL

A0A5A7T4Y0 Ty3/gypsy retrotransposon protein1.4e-2948.84Show/hide
Query:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE
        MK++AD    +V+F   D+V+LK  PYR  S+  +RN+KL+PKYFGP+ +L+ +  +AYKL+ P  A IHPVFHVSQLKKA+G G T +SL   ++ N E
Subjt:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE

Query:  WELQPSSVLGIRQHSTTGTGDVLVHWKDL
        W  QP  V G R++ TT   + L+ WK L
Subjt:  WELQPSSVLGIRQHSTTGTGDVLVHWKDL

A0A5D3C5I2 Soluble inorganic pyrophosphatase 15.2e-2949.61Show/hide
Query:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE
        MK++AD    +V+F   DLV+LK  PYR  SL  +RN+KL+PKYFGP+ IL+ +  +AYKL+ P  A IHPVFHVSQLKKA+G G T   L   ++ N E
Subjt:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE

Query:  WELQPSSVLGIRQHSTTGTGDVLVHWKDL
        W  QP  V   R++ TT   + L+ WK L
Subjt:  WELQPSSVLGIRQHSTTGTGDVLVHWKDL

A0A5D3CU05 Ty3/gypsy retrotransposon protein1.4e-2948.84Show/hide
Query:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE
        MK++AD    +V+F   D+V+LK  PYR  S+  +RN+KL+PKYFGP+ +L+ +  +AYKL+ P  A IHPVFHVSQLKKA+G G T +SL   ++ N E
Subjt:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE

Query:  WELQPSSVLGIRQHSTTGTGDVLVHWKDL
        W  QP  V G R++ TT   + L+ WK L
Subjt:  WELQPSSVLGIRQHSTTGTGDVLVHWKDL

A0A5D3DM31 Ty3/gypsy retrotransposon protein5.2e-2948.06Show/hide
Query:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE
        MK++AD    +V+F   D+V+LK  PYR  S+  +RN+KL+PKYFGP+ +L+ +  +AY+L+ P  A IHPVFHVSQLKKA+G G T  SLT  ++ N E
Subjt:  MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFE

Query:  WELQPSSVLGIRQHSTTGTGDVLVHWKDL
        W  QP  V G R++ +T   + L+ WK L
Subjt:  WELQPSSVLGIRQHSTTGTGDVLVHWKDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAAGAGGCTGATAAGCATAGTTGGGATGTTCAATTTGATGTCAGTGATCTAGTTTATTTGAAGTTTTGCCCGTATCGCTTATTGTCTTTGGTTCACCGA
CGCAATAAAAAGTTGGCTCCCAAATATTTTGGTCCTTTTTGCATTCTGCAATGTGTTCACCCCATCGCGTACAAGTTGGACTTTCCTCCTTCAGCCCAAATACAT
CCAGTTTTTCATGTTTCTCAGCTCAAGAAGGCTATTGGCAATGGGGTGACCTCCTATTCTTTAACTTCCCAATTATCTTCTAATTTTGAGTGGGAGCTTCAACCT
TCTTCTGTTTTGGGAATTCGCCAACATTCTACTACTGGCACAGGGGATGTCCTTGTTCATTGGAAGGATTTACTAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAAGAGGCTGATAAGCATAGTTGGGATGTTCAATTTGATGTCAGTGATCTAGTTTATTTGAAGTTTTGCCCGTATCGCTTATTGTCTTTGGTTCACCGA
CGCAATAAAAAGTTGGCTCCCAAATATTTTGGTCCTTTTTGCATTCTGCAATGTGTTCACCCCATCGCGTACAAGTTGGACTTTCCTCCTTCAGCCCAAATACAT
CCAGTTTTTCATGTTTCTCAGCTCAAGAAGGCTATTGGCAATGGGGTGACCTCCTATTCTTTAACTTCCCAATTATCTTCTAATTTTGAGTGGGAGCTTCAACCT
TCTTCTGTTTTGGGAATTCGCCAACATTCTACTACTGGCACAGGGGATGTCCTTGTTCATTGGAAGGATTTACTAGATTGA
Protein sequenceShow/hide protein sequence
MKQEADKHSWDVQFDVSDLVYLKFCPYRLLSLVHRRNKKLAPKYFGPFCILQCVHPIAYKLDFPPSAQIHPVFHVSQLKKAIGNGVTSYSLTSQLSSNFEWELQP
SSVLGIRQHSTTGTGDVLVHWKDLLD