CuGenDBv2

Gene ID	Clc09G14650
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	mediator of RNA polymerase II transcription subunit 15a
Genome location	ClcChr09:19301344..19303164
RNA-Seq Expression	Clc09G14650
Synteny	Clc09G14650
Gene Ontology terms	GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0003713 - transcription coactivator activity (molecular function) GO:0031490 - chromatin DNA binding (molecular function)
InterPro domains	IPR044661 - Mediator of RNA polymerase II transcription subunit 15a/b/c-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588792.1 Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia]

6.7e-29

97.06

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Query:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
        KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
Subjt:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA

XP_022927757.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata]

6.7e-29

97.06

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Query:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
        KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
Subjt:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA

XP_022988663.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita maxima]

6.7e-29

97.06

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Query:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
        KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
Subjt:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA

XP_022988665.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X3 [Cucurbita maxima]

6.7e-29

97.06

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Query:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
        KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
Subjt:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA

XP_038887416.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Benincasa hispida]

6.7e-29

97.06

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Query:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
        KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
Subjt:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA

TrEMBL top hits

e value

%identity

Alignment

A0A6J1EI34 mediator of RNA polymerase II transcription subunit 15a-like isoform X1

3.2e-29

97.06

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Query:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
        KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
Subjt:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA

A0A6J1JHV7 mediator of RNA polymerase II transcription subunit 15a-like isoform X4

3.2e-29

97.06

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Query:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
        KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
Subjt:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA

A0A6J1JK72 mediator of RNA polymerase II transcription subunit 15a-like isoform X3

3.2e-29

97.06

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Query:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
        KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
Subjt:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA

A0A6J1JM75 mediator of RNA polymerase II transcription subunit 15a-like isoform X2

3.2e-29

97.06

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Query:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
        KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
Subjt:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA

A0A6J1JMY4 mediator of RNA polymerase II transcription subunit 15a-like isoform X1

3.2e-29

97.06

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Query:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
        KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
Subjt:  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA

SwissProt top hits

e value

%identity

Alignment

F4I171 Mediator of RNA polymerase II transcription subunit 15a

1.0e-19

46.88

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Query:  FSLLASLPNLHPNL-SLNLKPMGVLGLRNVTCSSPD-AEEFEDKVALQAAGSDGPRFTKVKEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARA
        F  ++  P L  +L S  + P+  L L  V CS P+ +    DK+ ++ +          KE EDLS KA +RF+I LR+LSQPMSL D+A+TWD CARA
Subjt:  FSLLASLPNLHPNL-SLNLKPMGVLGLRNVTCSSPD-AEEFEDKVALQAAGSDGPRFTKVKEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARA

Query:  VVSEYAQQSGGGSFCSKYGAWENCLSAA
        V+ EYAQQ GGG+F SKYG WE  ++A+
Subjt:  VVSEYAQQSGGGSFCSKYGAWENCLSAA

Q9SHV7 Probable mediator of RNA polymerase II transcription subunit 15c

9.7e-15

52.11

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Query:  TKVKEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
        T V +YEDLS + +SRFS+S++  S+P     +A+TW+ CARA + EYA++ GGG+F SKYGAWE  L A+
Subjt:  TKVKEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA

Arabidopsis top hits

e value

%identity

Alignment

AT1G15780.1 unknown protein

7.1e-21

46.88

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Query:  FSLLASLPNLHPNL-SLNLKPMGVLGLRNVTCSSPD-AEEFEDKVALQAAGSDGPRFTKVKEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARA
        F  ++  P L  +L S  + P+  L L  V CS P+ +    DK+ ++ +          KE EDLS KA +RF+I LR+LSQPMSL D+A+TWD CARA
Subjt:  FSLLASLPNLHPNL-SLNLKPMGVLGLRNVTCSSPD-AEEFEDKVALQAAGSDGPRFTKVKEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARA

Query:  VVSEYAQQSGGGSFCSKYGAWENCLSAA
        V+ EYAQQ GGG+F SKYG WE  ++A+
Subjt:  VVSEYAQQSGGGSFCSKYGAWENCLSAA

AT2G10440.1 unknown protein

6.9e-16

52.11

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Query:  TKVKEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
        T V +YEDLS + +SRFS+S++  S+P     +A+TW+ CARA + EYA++ GGG+F SKYGAWE  L A+
Subjt:  TKVKEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA

AT2G10440.2 unknown protein

6.9e-16

52.11

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Query:  TKVKEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
        T V +YEDLS + +SRFS+S++  S+P     +A+TW+ CARA + EYA++ GGG+F SKYGAWE  L A+
Subjt:  TKVKEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA

Sequences

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CDS sequence

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ATGTCTTTTGCCATCTCTATCCCAAGTTGGCACCAGCGGTTTATTGGTCCTTTTCAAATCATTGAATGTGTGGGCCCTGTTGCATGTCGTTTGGAGTTACCCACC
ACCTTGAAGGTACATCCAGTTTTTCATGTAGCCCAGTTGCGTAAGGCTGTTGGTTCGGTGTTTTCCTTATTGGCATCCCTTCCAAATTTGCATCCCAACTTGTCT
CTTAATTTGAAGCCCATGGGTGTTTTGGGCTTGCGCAATGTCACCTGTAGCAGCCCTGATGCGGAAGAATTTGAAGACAAGGTGGCTCTTCAGGCAGCGGGTAGT
GATGGACCCCGGTTTACTAAAGTTAAGGAATATGAAGACCTTTCAGTAAAGGCCAAGTCAAGATTTAGCATATCCTTGCGAAACCTTTCACAACCGATGTCGCTC
GGGGACATGGCAAGAACTTGGGATGTCTGTGCACGTGCTGTTGTTTCTGAGTACGCTCAGCAGAGCGGTGGTGGCAGCTTTTGTTCAAAGTATGGTGCTTGGGAG
AACTGTTTGAGCGCTGCGTGA

mRNA sequence

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Protein sequence

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MSFAISIPSWHQRFIGPFQIIECVGPVACRLELPTTLKVHPVFHVAQLRKAVGSVFSLLASLPNLHPNLSLNLKPMGVLGLRNVTCSSPDAEEFEDKVALQAAGS
DGPRFTKVKEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA

Clc09G14650 (gene) of Watermelon (cordophanus) v2 genome