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Clc09G14770 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G14770
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPMD domain-containing protein
Genome locationClcChr09:19776428..19776754
RNA-Seq ExpressionClc09G14770
SyntenyClc09G14770
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025356.1 hypothetical protein E6C27_scaffold1204G00400 [Cucumis melo var. makuwa]2.6e-2867.71Show/hide
Query:  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK
        YEE IP +++LT  SR+KTK LP TC++LF AY+SIVC+QR D ++S KNDSQVTI SWISFW+LG+R YDKP+ RKQKKAS S+ST NPDG+KI+
Subjt:  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK

KAA0043323.1 hypothetical protein E6C27_scaffold110G002340 [Cucumis melo var. makuwa]2.0e-2867.71Show/hide
Query:  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK
        YEE IP +++LT  SR+KTK LP TC++LF AY+SIVC+QR D ++S KNDSQVTI SWISFW+LG+R YDKP+ RKQKK SRS+ST NPDG+KI+
Subjt:  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK

KAA0057575.1 hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa]2.0e-2867.71Show/hide
Query:  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK
        YEE IP +++LT  SR+KTK LP TC++LF AY+SIVC+QR D ++S KNDSQVTI SWISFW+LG++ YDKP  RKQKKASRS+ST NPDG+KI+
Subjt:  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK

TYK06278.1 hypothetical protein E5676_scaffold157G00620 [Cucumis melo var. makuwa]6.8e-2966.34Show/hide
Query:  DQESLYEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKI
        D    YEE IP +++LT  SR+KTK LP TC++LF AY+SIVC+QR D ++S KNDSQVTI SWISFW+LG+R YDKP+ RKQKKASRS+ST NPDG KI
Subjt:  DQESLYEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKI

Query:  K
        +
Subjt:  K

TYK19639.1 hypothetical protein E5676_scaffold242G00260 [Cucumis melo var. makuwa]2.6e-2866.67Show/hide
Query:  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK
        YEE+IP +++LT  SR+KTK LP  C++LF AY+SIVC+QR D ++S KNDSQVTI SWISFW+LG+R YDKP+ RKQKK SRS+ST NPDG+KI+
Subjt:  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK

TrEMBL top hitse value%identityAlignment
A0A5A7SHN8 PMD domain-containing protein1.3e-2867.71Show/hide
Query:  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK
        YEE IP +++LT  SR+KTK LP TC++LF AY+SIVC+QR D ++S KNDSQVTI SWISFW+LG+R YDKP+ RKQKKAS S+ST NPDG+KI+
Subjt:  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK

A0A5A7TFC8 PMD domain-containing protein1.3e-2866.67Show/hide
Query:  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK
        YEE+IP +++LT  SR+KTK LP  C++LF AY+SIVC+QR D ++S KNDSQVTI SWISFW+LG+R YDKP+ RKQKK SRS+ST NPDG+KI+
Subjt:  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK

A0A5A7TIV2 Uncharacterized protein9.6e-2967.71Show/hide
Query:  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK
        YEE IP +++LT  SR+KTK LP TC++LF AY+SIVC+QR D ++S KNDSQVTI SWISFW+LG+R YDKP+ RKQKK SRS+ST NPDG+KI+
Subjt:  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK

A0A5A7UVI5 PMD domain-containing protein9.6e-2967.71Show/hide
Query:  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK
        YEE IP +++LT  SR+KTK LP TC++LF AY+SIVC+QR D ++S KNDSQVTI SWISFW+LG++ YDKP  RKQKKASRS+ST NPDG+KI+
Subjt:  YEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKIK

A0A5D3C543 PMD domain-containing protein3.3e-2966.34Show/hide
Query:  DQESLYEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKI
        D    YEE IP +++LT  SR+KTK LP TC++LF AY+SIVC+QR D ++S KNDSQVTI SWISFW+LG+R YDKP+ RKQKKASRS+ST NPDG KI
Subjt:  DQESLYEEVIPCYRKLTG-SREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAKI

Query:  K
        +
Subjt:  K

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGCTTGGGGGTCTTTCGATCAAGAGAGTTTGTATGAGGAGGTCATTCCTTGCTATAGAAAATTAACCGGCTCGCGAGAGAAGACAAAATATCTCCCGAAG
ACTTGTGAACATCTGTTTTCAGCGTATCATTCAATAGTTTGCTCCCAGAGGAAAGACTGTGCATCATCCTTTAAAAATGACTCCCAAGTAACTATTAGCTCCTGG
ATCTCATTCTGGTTCCTTGGGGCTCGAAAATATGATAAGCCTTCTGCAAGAAAGCAAAAGAAAGCTTCCCGTTCTCGGTCCACTCATAACCCAGATGGTGCAAAG
ATCAAGTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGCTTGGGGGTCTTTCGATCAAGAGAGTTTGTATGAGGAGGTCATTCCTTGCTATAGAAAATTAACCGGCTCGCGAGAGAAGACAAAATATCTCCCGAAG
ACTTGTGAACATCTGTTTTCAGCGTATCATTCAATAGTTTGCTCCCAGAGGAAAGACTGTGCATCATCCTTTAAAAATGACTCCCAAGTAACTATTAGCTCCTGG
ATCTCATTCTGGTTCCTTGGGGCTCGAAAATATGATAAGCCTTCTGCAAGAAAGCAAAAGAAAGCTTCCCGTTCTCGGTCCACTCATAACCCAGATGGTGCAAAG
ATCAAGTATTGA
Protein sequenceShow/hide protein sequence
MVAWGSFDQESLYEEVIPCYRKLTGSREKTKYLPKTCEHLFSAYHSIVCSQRKDCASSFKNDSQVTISSWISFWFLGARKYDKPSARKQKKASRSRSTHNPDGAK
IKY