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Clc09G15050 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G15050
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiontranscription initiation factor TFIID subunit 6
Genome locationClcChr09:20573131..20574738
RNA-Seq ExpressionClc09G15050
SyntenyClc09G15050
Gene Ontology termsGO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process)
GO:0000124 - SAGA complex (cellular component)
GO:0005669 - transcription factor TFIID complex (cellular component)
GO:0046695 - SLIK (SAGA-like) complex (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR037796 - Transcription initiation factor TFIID subunit 6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589132.1 Transcription initiation factor TFIID subunit 6, partial [Cucurbita argyrosperma subsp. sororia]6.5e-4082.46Show/hide
Query:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV
        V VILPPSDVK NEQK+GLPVDIKLPVKHILSKELQLYFDKITE VVSRS+SVLFKKALVSL+TDS LH L           VARGLGDYSLLFALMRVV
Subjt:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV

Query:  WSLLQNPYIHIEPY
        WSLLQNP+IHIEPY
Subjt:  WSLLQNPYIHIEPY

XP_022135619.1 transcription initiation factor TFIID subunit 6 [Momordica charantia]5.8e-4184.21Show/hide
Query:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV
        V VILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITE VVSRSS+VLFKKAL SLATDS LH L           VARGLGDYSLLFALMRVV
Subjt:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV

Query:  WSLLQNPYIHIEPY
        WSLLQNP+IHIEPY
Subjt:  WSLLQNPYIHIEPY

XP_022930656.1 transcription initiation factor TFIID subunit 6-like [Cucurbita moschata]6.5e-4082.46Show/hide
Query:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV
        V VILPPSDVK NEQK+GLPVDIKLPVKHILSKELQLYFDKITE VVSRS+SVLFKKALVSL+TDS LH L           VARGLGDYSLLFALMRVV
Subjt:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV

Query:  WSLLQNPYIHIEPY
        WSLLQNP+IHIEPY
Subjt:  WSLLQNPYIHIEPY

XP_022988732.1 transcription initiation factor TFIID subunit 6-like [Cucurbita maxima]6.5e-4082.46Show/hide
Query:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV
        V VILPPSDVK NEQK+GLPVDIKLPVKHILSKELQLYFDKITE VVSRS+SVLFKKALVSL+TDS LH L           VARGLGDYSLLFALMRVV
Subjt:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV

Query:  WSLLQNPYIHIEPY
        WSLLQNP+IHIEPY
Subjt:  WSLLQNPYIHIEPY

XP_023529663.1 transcription initiation factor TFIID subunit 6 [Cucurbita pepo subsp. pepo]6.5e-4082.46Show/hide
Query:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV
        V VILPPSDVK NEQK+GLPVDIKLPVKHILSKELQLYFDKITE VVSRS+SVLFKKALVSL+TDS LH L           VARGLGDYSLLFALMRVV
Subjt:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV

Query:  WSLLQNPYIHIEPY
        WSLLQNP+IHIEPY
Subjt:  WSLLQNPYIHIEPY

TrEMBL top hitse value%identityAlignment
A0A0A0KEI5 TAF domain-containing protein5.3e-4082.46Show/hide
Query:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV
        V VILPPSD KSNEQ  GLPVDIKLPVKHILSKELQLYFDKITE VVSRSSS+LFKKALVSLATDS LH L           VARGLGDYSLLFALMRVV
Subjt:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV

Query:  WSLLQNPYIHIEPY
        WSLLQNP+IHIEPY
Subjt:  WSLLQNPYIHIEPY

A0A1S4DXQ6 transcription initiation factor TFIID subunit 6-like1.2e-3981.58Show/hide
Query:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV
        V VILPPSD KSNEQ  GLPVDIKLPVKHILSKELQLYFDKITE VVS+SSS+LFKKALVSLATDS LH L           VARGLGDYSLLFALMRVV
Subjt:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV

Query:  WSLLQNPYIHIEPY
        WSLLQNP+IHIEPY
Subjt:  WSLLQNPYIHIEPY

A0A6J1C1Y6 transcription initiation factor TFIID subunit 62.8e-4184.21Show/hide
Query:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV
        V VILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITE VVSRSS+VLFKKAL SLATDS LH L           VARGLGDYSLLFALMRVV
Subjt:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV

Query:  WSLLQNPYIHIEPY
        WSLLQNP+IHIEPY
Subjt:  WSLLQNPYIHIEPY

A0A6J1ERJ6 transcription initiation factor TFIID subunit 6-like3.1e-4082.46Show/hide
Query:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV
        V VILPPSDVK NEQK+GLPVDIKLPVKHILSKELQLYFDKITE VVSRS+SVLFKKALVSL+TDS LH L           VARGLGDYSLLFALMRVV
Subjt:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV

Query:  WSLLQNPYIHIEPY
        WSLLQNP+IHIEPY
Subjt:  WSLLQNPYIHIEPY

A0A6J1JDV8 transcription initiation factor TFIID subunit 6-like3.1e-4082.46Show/hide
Query:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV
        V VILPPSDVK NEQK+GLPVDIKLPVKHILSKELQLYFDKITE VVSRS+SVLFKKALVSL+TDS LH L           VARGLGDYSLLFALMRVV
Subjt:  VPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVV

Query:  WSLLQNPYIHIEPY
        WSLLQNP+IHIEPY
Subjt:  WSLLQNPYIHIEPY

SwissProt top hitse value%identityAlignment
F4HVA6 Transcription initiation factor TFIID subunit 6b5.2e-1643.93Show/hide
Query:  SDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHALV-----------ARGLGDYSLLFALMRVVWSLLQNP
        SD+K +E KD       L  + +LSK+LQ+YFDK+TE+ +++S S LF++AL SL  D  LH LV            + + +Y +L ALMR+  SLL NP
Subjt:  SDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHALV-----------ARGLGDYSLLFALMRVVWSLLQNP

Query:  YIHIEPY
        ++HIEPY
Subjt:  YIHIEPY

O74462 Transcription initiation factor TFIID subunit 63.5e-1236.97Show/hide
Query:  ILPPSDVKSNEQKDGLP----VDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRV
        ++P +   + E ++G+     V+IK  V+H+LSKELQLYF++IT  ++  ++  L   AL SL  D  LH L           V R LG+  +L  LM +
Subjt:  ILPPSDVKSNEQKDGLP----VDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRV

Query:  VWSLLQNPYIHIEPYQPDL
         W+LL NP + +EPY   L
Subjt:  VWSLLQNPYIHIEPYQPDL

P53040 Transcription initiation factor TFIID subunit 61.0e-0836.54Show/hide
Query:  KDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRS-----SSVLFKKALVSLATDSELHALV-----------ARGLGDYSLLFALMRVVWSLLQNPYIH
        K G   ++K  VKH+LSKELQ+YF+K+   + ++S     +  + + AL SL TDS LH LV            + L D  LL  ++ +++SLL N  I 
Subjt:  KDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRS-----SSVLFKKALVSLATDSELHALV-----------ARGLGDYSLLFALMRVVWSLLQNPYIH

Query:  IEPY
        ++PY
Subjt:  IEPY

Q9MAU3 Transcription initiation factor TFIID subunit 64.2e-2656.25Show/hide
Query:  VILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVVWS
        VI  P++ K +EQKDG  +D++LPVKH+LS+ELQLYF KI E  +S+S+  L+K+ALVSLA+DS LH L           V+ GL D+ LLF LM +V S
Subjt:  VILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVVWS

Query:  LLQNPYIHIEPY
        LLQNP+IHIEPY
Subjt:  LLQNPYIHIEPY

Arabidopsis top hitse value%identityAlignment
AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 593.0e-2756.25Show/hide
Query:  VILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVVWS
        VI  P++ K +EQKDG  +D++LPVKH+LS+ELQLYF KI E  +S+S+  L+K+ALVSLA+DS LH L           V+ GL D+ LLF LM +V S
Subjt:  VILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVVWS

Query:  LLQNPYIHIEPY
        LLQNP+IHIEPY
Subjt:  LLQNPYIHIEPY

AT1G04950.2 TATA BOX ASSOCIATED FACTOR II 593.0e-2756.25Show/hide
Query:  VILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVVWS
        VI  P++ K +EQKDG  +D++LPVKH+LS+ELQLYF KI E  +S+S+  L+K+ALVSLA+DS LH L           V+ GL D+ LLF LM +V S
Subjt:  VILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVVWS

Query:  LLQNPYIHIEPY
        LLQNP+IHIEPY
Subjt:  LLQNPYIHIEPY

AT1G04950.3 TATA BOX ASSOCIATED FACTOR II 593.0e-2756.25Show/hide
Query:  VILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVVWS
        VI  P++ K +EQKDG  +D++LPVKH+LS+ELQLYF KI E  +S+S+  L+K+ALVSLA+DS LH L           V+ GL D+ LLF LM +V S
Subjt:  VILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHAL-----------VARGLGDYSLLFALMRVVWS

Query:  LLQNPYIHIEPY
        LLQNP+IHIEPY
Subjt:  LLQNPYIHIEPY

AT1G54360.1 TBP-ASSOCIATED FACTOR 6B3.7e-1743.93Show/hide
Query:  SDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHALV-----------ARGLGDYSLLFALMRVVWSLLQNP
        SD+K +E KD       L  + +LSK+LQ+YFDK+TE+ +++S S LF++AL SL  D  LH LV            + + +Y +L ALMR+  SLL NP
Subjt:  SDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHALV-----------ARGLGDYSLLFALMRVVWSLLQNP

Query:  YIHIEPY
        ++HIEPY
Subjt:  YIHIEPY

AT1G54360.2 TBP-ASSOCIATED FACTOR 6B3.7e-1743.93Show/hide
Query:  SDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHALV-----------ARGLGDYSLLFALMRVVWSLLQNP
        SD+K +E KD       L  + +LSK+LQ+YFDK+TE+ +++S S LF++AL SL  D  LH LV            + + +Y +L ALMR+  SLL NP
Subjt:  SDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHALV-----------ARGLGDYSLLFALMRVVWSLLQNP

Query:  YIHIEPY
        ++HIEPY
Subjt:  YIHIEPY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGCTCTACATGCAGGGTGGACGCATGGTAATCGTGTACCCGTAATTTTACCACCTTCTGATGTCAAAAGTAATGAACAAAAGGATGGGCTGCCAGTTGATATTAA
ATTACCAGTTAAGCATATACTGTCGAAGGAGCTTCAGCTATATTTTGACAAAATCACAGAGTTTGTTGTTAGTAGGTCCAGTTCAGTTCTATTTAAAAAGGCATTAGTGA
GTTTAGCTACAGACTCGGAACTTCACGCATTGGTTGCACGTGGACTGGGTGACTATTCCCTCCTTTTTGCTTTAATGCGTGTTGTTTGGAGTCTTCTTCAGAATCCTTAC
ATCCACATAGAACCTTATCAGCCAGATCTCTACCATCATCTTGCCCTGCTTTGTCCTCCATGGTTCTGGGTTTCAGCTCAGAGTAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATGCTCTACATGCAGGGTGGACGCATGGTAATCGTGTACCCGTAATTTTACCACCTTCTGATGTCAAAAGTAATGAACAAAAGGATGGGCTGCCAGTTGATATTAA
ATTACCAGTTAAGCATATACTGTCGAAGGAGCTTCAGCTATATTTTGACAAAATCACAGAGTTTGTTGTTAGTAGGTCCAGTTCAGTTCTATTTAAAAAGGCATTAGTGA
GTTTAGCTACAGACTCGGAACTTCACGCATTGGTTGCACGTGGACTGGGTGACTATTCCCTCCTTTTTGCTTTAATGCGTGTTGTTTGGAGTCTTCTTCAGAATCCTTAC
ATCCACATAGAACCTTATCAGCCAGATCTCTACCATCATCTTGCCCTGCTTTGTCCTCCATGGTTCTGGGTTTCAGCTCAGAGTAACTGA
Protein sequenceShow/hide protein sequence
MHALHAGWTHGNRVPVILPPSDVKSNEQKDGLPVDIKLPVKHILSKELQLYFDKITEFVVSRSSSVLFKKALVSLATDSELHALVARGLGDYSLLFALMRVVWSLLQNPY
IHIEPYQPDLYHHLALLCPPWFWVSAQSN