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Clc09G15230 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G15230
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGag/pol protein
Genome locationClcChr09:20802641..20804660
RNA-Seq ExpressionClc09G15230
SyntenyClc09G15230
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035451.1 uncharacterized protein E6C27_scaffold285G00780 [Cucumis melo var. makuwa]9.9e-0879.55Show/hide
Query:  TQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASR
        TQYAYHFGDSSDWGA NAATQEGI SF   R SREIA LRV  R
Subjt:  TQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASR

KAA0045330.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]7.9e-1372.88Show/hide
Query:  TQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASRLERCGTTPCPGSRGV
        TQYAYHFGDSSDWGA N ATQEGI SF   R SREIA LR   RLE+CG TP  G RGV
Subjt:  TQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASRLERCGTTPCPGSRGV

KAA0047793.1 uncharacterized protein E6C27_scaffold133G00320 [Cucumis melo var. makuwa]2.4e-0673.33Show/hide
Query:  TQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASRL
        TQYAYHFGDSSDWGA NAATQE I SF   R SRE A LRV  R+
Subjt:  TQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASRL

KAA0051461.1 uncharacterized protein E6C27_scaffold55G002220 [Cucumis melo var. makuwa]3.5e-0564.15Show/hide
Query:  SNNKVVSSSTQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASR
        S  +VV   TQYAYHFG SSD GA+N AT+EGI SF   R SREIA LR  SR
Subjt:  SNNKVVSSSTQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASR

TYJ96910.1 gag/pol protein [Cucumis melo var. makuwa]1.7e-1271.19Show/hide
Query:  TQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASRLERCGTTPCPGSRGV
        TQYAYHFGDSSDWGA N ATQEGI SF   R SREIA LR   RLE+CG TP  G +GV
Subjt:  TQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASRLERCGTTPCPGSRGV

TrEMBL top hitse value%identityAlignment
A0A5A7TQ86 Retrotransposon protein, putative, Ty1-copia subclass3.8e-1372.88Show/hide
Query:  TQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASRLERCGTTPCPGSRGV
        TQYAYHFGDSSDWGA N ATQEGI SF   R SREIA LR   RLE+CG TP  G RGV
Subjt:  TQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASRLERCGTTPCPGSRGV

A0A5A7TW48 Uncharacterized protein1.2e-0673.33Show/hide
Query:  TQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASRL
        TQYAYHFGDSSDWGA NAATQE I SF   R SRE A LRV  R+
Subjt:  TQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASRL

A0A5A7UD31 Uncharacterized protein1.7e-0564.15Show/hide
Query:  SNNKVVSSSTQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASR
        S  +VV   TQYAYHFG SSD GA+N AT+EGI SF   R SREIA LR  SR
Subjt:  SNNKVVSSSTQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASR

A0A5D3BAN6 Gag/pol protein8.5e-1371.19Show/hide
Query:  TQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASRLERCGTTPCPGSRGV
        TQYAYHFGDSSDWGA N ATQEGI SF   R SREIA LR   RLE+CG TP  G +GV
Subjt:  TQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASRLERCGTTPCPGSRGV

A0A5D3E593 Uncharacterized protein4.8e-0879.55Show/hide
Query:  TQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASR
        TQYAYHFGDSSDWGA NAATQEGI SF   R SREIA LRV  R
Subjt:  TQYAYHFGDSSDWGAENAATQEGIPSFPTVRKSREIAPLRVASR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGTGGAGAAGAGTTTGTCTGGGGAGAAGATTGAGAAAGCGACGTTTAAAGGAGGAAGAGTGGGACATCCATTAGGGATGTCACGACAACCTAGTGAGTCTATAAC
GAATTCAACCAGGAAATCGTTATGTAACACTTGTGGGAATATCACTAGGGCGAGTGCTGCAATGGATCAAATGTTTGCTATAATTGTGAGTAGACAAGACAAGACATTTC
AGGAGAGATTATCCCCAGCTGATAGCAGGACATGGAGCAGAGCAACATGCAAGTTCTCAAACAATAAAGTGGTCAGTTCGTCAACTCAATATGCCTACCATTTTGGGGAT
TCGTCTGATTGGGGAGCTGAGAACGCAGCTACACAAGAAGGAATTCCCTCCTTCCCTACTGTTAGGAAAAGTAGAGAAATTGCTCCCTTAAGGGTTGCTTCGAGGCTTGA
ACGATGTGGCACCACACCCTGTCCTGGCTCGAGAGGAGTTTGGTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGTGGAGAAGAGTTTGTCTGGGGAGAAGATTGAGAAAGCGACGTTTAAAGGAGGAAGAGTGGGACATCCATTAGGGATGTCACGACAACCTAGTGAGTCTATAAC
GAATTCAACCAGGAAATCGTTATGTAACACTTGTGGGAATATCACTAGGGCGAGTGCTGCAATGGATCAAATGTTTGCTATAATTGTGAGTAGACAAGACAAGACATTTC
AGGAGAGATTATCCCCAGCTGATAGCAGGACATGGAGCAGAGCAACATGCAAGTTCTCAAACAATAAAGTGGTCAGTTCGTCAACTCAATATGCCTACCATTTTGGGGAT
TCGTCTGATTGGGGAGCTGAGAACGCAGCTACACAAGAAGGAATTCCCTCCTTCCCTACTGTTAGGAAAAGTAGAGAAATTGCTCCCTTAAGGGTTGCTTCGAGGCTTGA
ACGATGTGGCACCACACCCTGTCCTGGCTCGAGAGGAGTTTGGTTATAG
Protein sequenceShow/hide protein sequence
MRVEKSLSGEKIEKATFKGGRVGHPLGMSRQPSESITNSTRKSLCNTCGNITRASAAMDQMFAIIVSRQDKTFQERLSPADSRTWSRATCKFSNNKVVSSSTQYAYHFGD
SSDWGAENAATQEGIPSFPTVRKSREIAPLRVASRLERCGTTPCPGSRGVWL