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Clc09G15320 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G15320
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRNase H domain-containing protein
Genome locationClcChr09:20835568..20836345
RNA-Seq ExpressionClc09G15320
SyntenyClc09G15320
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021721216.1 uncharacterized protein LOC110688762 [Chenopodium quinoa]2.6e-0723.3Show/hide
Query:  SFKDWWDALCSSYNSEELNIAAITCWAIWNDRNNKRMGKPIPNHDIKKDWVLKYYEQFL--QSSAKRGRKSQYASGAPN------------------SPT
        +F DW   L     S    +   TCWAIW  RN     +   N +   ++VLK  ++    +    RG  S  ++G  +                     
Subjt:  SFKDWWDALCSSYNSEELNIAAITCWAIWNDRNNKRMGKPIPNHDIKKDWVLKYYEQFL--QSSAKRGRKSQYASGAPN------------------SPT

Query:  NKWQPP-------------------PRVVVESDCLEVINSLSGSKEGSTLLDCWIDEITDIAGKFDSISFNFCKRECNKVADLVAKHAKVSDLNCFWLSN
        + W+P                      ++VESD L +I ++     G + L   +D+I D++G  + +S++F +RE NKVA  +A        +  W SN
Subjt:  NKWQPP-------------------PRVVVESDCLEVINSLSGSKEGSTLLDCWIDEITDIAGKFDSISFNFCKRECNKVADLVAKHAKVSDLNCFWLSN

Query:  YPEWVV
        +P  ++
Subjt:  YPEWVV

XP_021838216.1 uncharacterized protein LOC110777953 [Spinacia oleracea]5.3e-0832.97Show/hide
Query:  WQPPPRVVVESDCLEVINSLSGSKEGSTLLDCWIDEITDIAGKFDSISFNFCKRECNKVADLVAKHAKVSDLNCFWLSNYPEWVVNQVLKD
        WQ   R+V E D   ++ +L G  +    +  +ID++  +   F+   FNFC R CN+ A  +AK A  SD    W+   P W+ N V+ D
Subjt:  WQPPPRVVVESDCLEVINSLSGSKEGSTLLDCWIDEITDIAGKFDSISFNFCKRECNKVADLVAKHAKVSDLNCFWLSNYPEWVVNQVLKD

XP_021867343.1 uncharacterized protein LOC110806015 [Spinacia oleracea]7.6e-0737.33Show/hide
Query:  VVVESDCLEVINSLSGSKEGSTLLDCWIDEITDIAGKFDSISFNFCKRECNKVADLVAKHAKVSDLNCFWLSNYP
        +V+ESDCL ++ ++    +G +  D  +D+ITD+   FD++SF+F KR  NKVA ++A          FW+ N+P
Subjt:  VVVESDCLEVINSLSGSKEGSTLLDCWIDEITDIAGKFDSISFNFCKRECNKVADLVAKHAKVSDLNCFWLSNYP

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]7.6e-0724.28Show/hide
Query:  EFNGSFKDWWDALCSSYNSEELNIAAITCWAIWNDRNNKRMGKPIPNHDIKKDWVLKYYEQFLQSSAKRGRKSQYASGAPNSPTNKWQPPPRV-------
        E N SF + W +L      ++LN+AAIT W IWNDRN+   GK +   + K +W+  + +    S A+    S             W+P   V       
Subjt:  EFNGSFKDWWDALCSSYNSEELNIAAITCWAIWNDRNNKRMGKPIPNHDIKKDWVLKYYEQFLQSSAKRGRKSQYASGAPNSPTNKWQPPPRV-------

Query:  -------------VVESDC------------------LEVINSLSGSK------------EGSTLL---------------DCWIDEITDIAGKFDSISF
                     + +S C                   E+   L G K            E  +LL                 W+ EI  +   F  ISF
Subjt:  -------------VVESDC------------------LEVINSLSGSK------------EGSTLL---------------DCWIDEITDIAGKFDSISF

Query:  NFCKRECNKVADLVAKHAKVSDLNCF-WLSNYPEWVVNQVLKD
        +   R+CN+ A  +AK    S    + WL N+P W+++ V +D
Subjt:  NFCKRECNKVADLVAKHAKVSDLNCF-WLSNYPEWVVNQVLKD

XP_024039324.1 uncharacterized protein LOC112097962 [Citrus clementina]2.6e-0725.28Show/hide
Query:  SSYNSEELNIAAITCWAIWNDRNNKRMGKPIPNHDIKKDWVLKYYEQFLQSSAKRGRK--SQYASGAPNSPTNKWQPPPR------------------VV
        S++   E   A   CWA+W  RN +   +   N        L    + L  +  R RK  + +          KW+PPPR                  ++
Subjt:  SSYNSEELNIAAITCWAIWNDRNNKRMGKPIPNHDIKKDWVLKYYEQFLQSSAKRGRK--SQYASGAPNSPTNKWQPPPR------------------VV

Query:  VESDCLEVINSLSGSKEGSTLLDCWIDEITDIAGKFDSISFNFCKRECNKVADLVAKHAKVSDLNCFWLSNYPEWVVN
        +E+DC EV++ L+ +K   T +   I +I +    F  + F    R CN  A  +AK A V++ +  WL + P  ++N
Subjt:  VESDCLEVINSLSGSKEGSTLLDCWIDEITDIAGKFDSISFNFCKRECNKVADLVAKHAKVSDLNCFWLSNYPEWVVN

TrEMBL top hitse value%identityAlignment
A0A0J8BAU9 Uncharacterized protein6.3e-0730.23Show/hide
Query:  VVVESDCLEVINSLSGSKEGSTLLDCWIDEITDIAGKFDSISFNFCKRECNKVADLVAKHAKVSDLNCFWLSNYPEWVVNQVLKDS
        VV+ESD   +IN+++   +    +   ++++ ++   F++I F+FC RECN++A  +AK A  +  +  WL   P W+ + ++ DS
Subjt:  VVVESDCLEVINSLSGSKEGSTLLDCWIDEITDIAGKFDSISFNFCKRECNKVADLVAKHAKVSDLNCFWLSNYPEWVVNQVLKDS

A0A2P6SDL6 Putative potassium channel, voltage-dependent, ERG3.1e-0634.34Show/hide
Query:  NKWQPPPRVVVESDCLEVIN-----SLSGSKEGSTLLDCWIDEITDIAGKFDSISFNFCKRECNKVADLVAKHAKVSDLNCFWLSNYPEWVVNQVLKDS
        NK++   R+VVESD  ++I      +L  ++  + +L   ++EI   A KF S  F  CKR+ N  A+ +A+HA  S     W+ N P+W++N + +DS
Subjt:  NKWQPPPRVVVESDCLEVIN-----SLSGSKEGSTLLDCWIDEITDIAGKFDSISFNFCKRECNKVADLVAKHAKVSDLNCFWLSNYPEWVVNQVLKDS

A0A6J1CTE3 uncharacterized protein LOC1110145783.1e-0633.02Show/hide
Query:  EFNGSFKDWWDALCSSYNSEELNIAAITCWAIWNDRNNKRMGKPIPNHDIKKDWVLKYYEQF-LQSSAKRG--RKSQYASGAPNSPTNKWQPPP----RV
        +FN S +D    L  S ++ + ++  +  WAIWNDRN  RM + IP+  I+ DW+L Y   F ++     G  R  + AS    +  N W PPP    ++
Subjt:  EFNGSFKDWWDALCSSYNSEELNIAAITCWAIWNDRNNKRMGKPIPNHDIKKDWVLKYYEQF-LQSSAKRG--RKSQYASGAPNSPTNKWQPPP----RV

Query:  VVESDC
         V++ C
Subjt:  VVESDC

A0A6J1DX30 uncharacterized protein LOC1110248743.7e-0724.28Show/hide
Query:  EFNGSFKDWWDALCSSYNSEELNIAAITCWAIWNDRNNKRMGKPIPNHDIKKDWVLKYYEQFLQSSAKRGRKSQYASGAPNSPTNKWQPPPRV-------
        E N SF + W +L      ++LN+AAIT W IWNDRN+   GK +   + K +W+  + +    S A+    S             W+P   V       
Subjt:  EFNGSFKDWWDALCSSYNSEELNIAAITCWAIWNDRNNKRMGKPIPNHDIKKDWVLKYYEQFLQSSAKRGRKSQYASGAPNSPTNKWQPPPRV-------

Query:  -------------VVESDC------------------LEVINSLSGSK------------EGSTLL---------------DCWIDEITDIAGKFDSISF
                     + +S C                   E+   L G K            E  +LL                 W+ EI  +   F  ISF
Subjt:  -------------VVESDC------------------LEVINSLSGSK------------EGSTLL---------------DCWIDEITDIAGKFDSISF

Query:  NFCKRECNKVADLVAKHAKVSDLNCF-WLSNYPEWVVNQVLKD
        +   R+CN+ A  +AK    S    + WL N+P W+++ V +D
Subjt:  NFCKRECNKVADLVAKHAKVSDLNCF-WLSNYPEWVVNQVLKD

A0A6J1DZK3 uncharacterized protein LOC1110249681.1e-0623.04Show/hide
Query:  NSEELNIAAITCWAIWNDRNNKRMGKPIPNHDIKKDWVLKYYEQFLQSSAKRGRKSQYASGAPNSPTNKWQPP---------------------------
        ++ EL +  ITCWA+WNDR+     K IP   IK +W+LKY E+ ++     G K +          N+W+PP                           
Subjt:  NSEELNIAAITCWAIWNDRNNKRMGKPIPNHDIKKDWVLKYYEQFLQSSAKRGRKSQYASGAPNSPTNKWQPP---------------------------

Query:  -------------------------------------PRVVVESDCLEVINSLSGSKEGSTLLDCWIDEITDIAGKFDSISFNFCKRECNKVADLVAKHA
                                              RVVVE+D LE +N +            W+++I   A  F  I F    RE N VA  + +  
Subjt:  -------------------------------------PRVVVESDCLEVINSLSGSKEGSTLLDCWIDEITDIAGKFDSISFNFCKRECNKVADLVAKHA

Query:  KVSDLNCFWLSNYPEWV
                W  ++P W+
Subjt:  KVSDLNCFWLSNYPEWV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G77815.1 BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G27870.1)3.8e-0433.33Show/hide
Query:  RVVVESDCLEVINSLSGSKEGSTLLDCWIDEITDIAGKFDSISFNFCKRECNKVADLVAKHAKVSD---LNCFWLSNYPEWVVN
        RV  E D   + N ++GSK    + + WI +I   + KF+SI FN+ KR  N  AD++AK    +    LN  W+ N   + ++
Subjt:  RVVVESDCLEVINSLSGSKEGSTLLDCWIDEITDIAGKFDSISFNFCKRECNKVADLVAKHAKVSD---LNCFWLSNYPEWVVN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAATGGAAGAGTTTAATGGAAGCTTCAAAGATTGGTGGGATGCTCTCTGCTCTAGCTACAATTCGGAAGAGTTAAACATTGCTGCCATCACTTGTTGGGCAATATG
GAATGATAGAAACAACAAAAGAATGGGGAAGCCAATTCCAAATCATGATATCAAGAAGGATTGGGTTCTAAAATATTATGAGCAGTTCCTACAGAGCTCTGCTAAAAGAG
GAAGAAAGTCTCAGTATGCTTCAGGGGCGCCGAACTCTCCAACTAACAAGTGGCAGCCTCCTCCCCGGGTAGTTGTGGAGTCTGATTGTCTCGAAGTCATTAATAGCTTA
TCTGGTTCGAAGGAGGGTTCAACTTTGCTAGACTGCTGGATAGACGAGATCACTGACATAGCAGGAAAGTTTGATTCGATTTCTTTTAATTTTTGTAAACGAGAATGTAA
TAAGGTCGCCGATCTTGTAGCAAAGCACGCAAAAGTCTCGGATCTTAATTGCTTTTGGCTTTCAAACTACCCAGAATGGGTTGTAAATCAAGTCCTAAAGGACTCTTGTC
AATCTTTGCCCTCGAGGCTTATTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAATGGAAGAGTTTAATGGAAGCTTCAAAGATTGGTGGGATGCTCTCTGCTCTAGCTACAATTCGGAAGAGTTAAACATTGCTGCCATCACTTGTTGGGCAATATG
GAATGATAGAAACAACAAAAGAATGGGGAAGCCAATTCCAAATCATGATATCAAGAAGGATTGGGTTCTAAAATATTATGAGCAGTTCCTACAGAGCTCTGCTAAAAGAG
GAAGAAAGTCTCAGTATGCTTCAGGGGCGCCGAACTCTCCAACTAACAAGTGGCAGCCTCCTCCCCGGGTAGTTGTGGAGTCTGATTGTCTCGAAGTCATTAATAGCTTA
TCTGGTTCGAAGGAGGGTTCAACTTTGCTAGACTGCTGGATAGACGAGATCACTGACATAGCAGGAAAGTTTGATTCGATTTCTTTTAATTTTTGTAAACGAGAATGTAA
TAAGGTCGCCGATCTTGTAGCAAAGCACGCAAAAGTCTCGGATCTTAATTGCTTTTGGCTTTCAAACTACCCAGAATGGGTTGTAAATCAAGTCCTAAAGGACTCTTGTC
AATCTTTGCCCTCGAGGCTTATTGAATAA
Protein sequenceShow/hide protein sequence
MQMEEFNGSFKDWWDALCSSYNSEELNIAAITCWAIWNDRNNKRMGKPIPNHDIKKDWVLKYYEQFLQSSAKRGRKSQYASGAPNSPTNKWQPPPRVVVESDCLEVINSL
SGSKEGSTLLDCWIDEITDIAGKFDSISFNFCKRECNKVADLVAKHAKVSDLNCFWLSNYPEWVVNQVLKDSCQSLPSRLIE