CuGenDBv2

Gene ID	Clc09G15370
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Gag/pol protein
Genome location	ClcChr09:20850695..20851018
RNA-Seq Expression	Clc09G15370
Synteny	Clc09G15370
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]

2.4e-34

76.53

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Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C+A KEAVWLKKFL DL+VVPNM+L ITLYCDN+GA+ANSKE RSHK  +HIERKYH I EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

KAA0035986.1 gag/pol protein [Cucumis melo var. makuwa]

5.3e-34

73.47

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Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C+ATKEAVWLKKFLTDL+VVPNMH+ ITLYCDN+G +ANS+E RSHK  +HIERKYH I EIV +GD+TV +I SE N+ DPFTKALTAKVF+ H
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

5.3e-34

75.51

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Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C+A KEAVWL+KFL DL+VVPNM+L ITLYCDN+GA+ANSKE RSHK  +HIERKYH I EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

KAA0053385.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

3.1e-34

75.51

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Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C A KEA+WL+KFL DL+VVPNM+L ITLYCDN+GA+ANSKESRSHK  +HIERKYH I EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

KAA0058279.1 gag/pol protein [Cucumis melo var. makuwa]

5.3e-34

75.51

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Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C+A KEAVWL+KFL DL+VVPNM+L ITLYCDN+GA+ANSKE RSHK  +HIERKYH I EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T187 Gag/pol protein

2.6e-34

73.47

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Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C+ATKEAVWLKKFLTDL+VVPNMH+ ITLYCDN+G +ANS+E RSHK  +HIERKYH I EIV +GD+TV +I SE N+ DPFTKALTAKVF+ H
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

A0A5A7T2V9 Gag/pol protein

1.2e-34

76.53

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Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C+A KEAVWLKKFL DL+VVPNM+L ITLYCDN+GA+ANSKE RSHK  +HIERKYH I EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

A0A5A7TZD0 Gag/pol protein

2.6e-34

75.51

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Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C+A KEAVWL+KFL DL+VVPNM+L ITLYCDN+GA+ANSKE RSHK  +HIERKYH I EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

A0A5A7UI63 Putative gag-pol polyprotein

1.5e-34

75.51

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Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C A KEA+WL+KFL DL+VVPNM+L ITLYCDN+GA+ANSKESRSHK  +HIERKYH I EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

A0A5A7UYE8 Gag/pol protein

2.6e-34

75.51

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Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH
        VA C+A KEAVWL+KFL DL+VVPNM+L ITLYCDN+GA+ANSKE RSHK  +HIERKYH I EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

3.1e-08

35.79

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Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVF
        +A+ +A +EA+WLK  LT + +   +   I +Y DN G I+ +     HK  +HI+ KYH   E VQ   + ++ I +E+ + D FTK L A  F
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVF

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.0e-08

33.33

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Query:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFK
        +A  +  KE +WLK+FL +L +    ++   +YCD+  AI  SK S  H   +HI+ +YH I E+V    + V +I++  N  D  TK +    F+
Subjt:  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTCTTAGAAAAAGGGTGTGACAATGTAGCTGTATGTAAAGCAACAAAAGAAGCAGTGTGGCTCAAGAAGTTCTTAACGGATCTGAAAGTTGTTCCAAATATG
CATCTGTTTATCACTCTTTATTGTGATAATAATGGTGCAATTGCAAACTCCAAAGAATCTAGAAGTCATAAGCACGACCAACACATTGAGCGAAAATACCATCCC
ATCGGAGAAATTGTGCAGAAAGGTGACATGACTGTTCAGCAGATCGCGTCAGAGCACAACATTGATGATCCATTTACAAAGGCTCTCACGGCTAAAGTGTTTAAG
GGTCACTAG

mRNA sequence

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Protein sequence

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MVLEKGCDNVAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFK
GH

Clc09G15370 (gene) of Watermelon (cordophanus) v2 genome