CuGenDBv2

Gene ID	Clc09G15380
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Gag/pol protein
Genome location	ClcChr09:20864327..20864716
RNA-Seq Expression	Clc09G15380
Synteny	Clc09G15380
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ADJ18449.1 gag/pol protein, partial [Bryonia dioica]

1.0e-39

82.69

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Query:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG
        MKDLGEAQY+ GIQIVRNRKNK LAMSQASYIDK+LSRYK+ NSK+  LPFRHGIHLSK+QCPKTPQ VED R IPY+SAVGSLMY MLCTRP+ICY+ G
Subjt:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG

Query:  IVSR
        IVSR
Subjt:  IVSR

KAA0053385.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

3.9e-39

81.55

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Query:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG
        MKDLGEAQYV GIQI+R+RKNKMLA+SQA+YIDKML RY + NSK+ LLPFRHG+HLSK+QCPKTPQ  ED RRIPYASAVG+LMYVMLCTRP+ICYA G
Subjt:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG

Query:  IVS
        IVS
Subjt:  IVS

KAA0059556.1 gag/pol protein [Cucumis melo var. makuwa]

3.9e-39

80.77

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Query:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG
        MKD+GEAQYV GIQI+R+RKNK LA+SQA+YIDKML RY + NSK+ LLPFRHG+HLSK+QCPKTPQ VED RRIPYASAVGSLMY MLCTRP+ICYA G
Subjt:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG

Query:  IVSR
        IVSR
Subjt:  IVSR

KAA0060794.1 putative Integrase core domain [Cucumis melo var. makuwa]

5.1e-39

78.7

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Query:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG
        MKDLGEAQYV GIQI+R+RKNK LA+SQA+YIDKML RY + NSK+ LLPF+HG+HLSK+QCPKTPQ VED RRIPYASAVGSLMY MLCTRP+ICYA G
Subjt:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG

Query:  IVSRCCKT
        IVSR  K+
Subjt:  IVSRCCKT

TYK03644.1 gag/pol protein [Cucumis melo var. makuwa]

2.4e-41

83.81

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Query:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG
        MKDLG AQYV G+QIVRNRKNK LAMSQ SYIDKMLSRYK+HNSK+ LLP+R+GIHLSK+QCPKTPQ VED   IPYASAVGSLMYVMLCTRPNICY+ G
Subjt:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG

Query:  IVSRC
        IVSRC
Subjt:  IVSRC

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UI63 Putative gag-pol polyprotein

1.9e-39

81.55

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Query:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG
        MKDLGEAQYV GIQI+R+RKNKMLA+SQA+YIDKML RY + NSK+ LLPFRHG+HLSK+QCPKTPQ  ED RRIPYASAVG+LMYVMLCTRP+ICYA G
Subjt:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG

Query:  IVS
        IVS
Subjt:  IVS

A0A5A7UZF3 Gag/pol protein

1.9e-39

80.77

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Query:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG
        MKD+GEAQYV GIQI+R+RKNK LA+SQA+YIDKML RY + NSK+ LLPFRHG+HLSK+QCPKTPQ VED RRIPYASAVGSLMY MLCTRP+ICYA G
Subjt:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG

Query:  IVSR
        IVSR
Subjt:  IVSR

A0A5A7V0F0 Putative Integrase core domain

2.5e-39

78.7

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Query:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG
        MKDLGEAQYV GIQI+R+RKNK LA+SQA+YIDKML RY + NSK+ LLPF+HG+HLSK+QCPKTPQ VED RRIPYASAVGSLMY MLCTRP+ICYA G
Subjt:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG

Query:  IVSRCCKT
        IVSR  K+
Subjt:  IVSRCCKT

A0A5D3BX45 Gag/pol protein

1.2e-41

83.81

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Query:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG
        MKDLG AQYV G+QIVRNRKNK LAMSQ SYIDKMLSRYK+HNSK+ LLP+R+GIHLSK+QCPKTPQ VED   IPYASAVGSLMYVMLCTRPNICY+ G
Subjt:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG

Query:  IVSRC
        IVSRC
Subjt:  IVSRC

E2GK51 Gag/pol protein (Fragment)

5.0e-40

82.69

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Query:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG
        MKDLGEAQY+ GIQIVRNRKNK LAMSQASYIDK+LSRYK+ NSK+  LPFRHGIHLSK+QCPKTPQ VED R IPY+SAVGSLMY MLCTRP+ICY+ G
Subjt:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVED-RRIPYASAVGSLMYVMLCTRPNICYAFG

Query:  IVSR
        IVSR
Subjt:  IVSR

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

5.3e-07

33.01

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Query:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVEDRRIPYASAVGSLMYVMLCTRPNICYAFGI
        M DL E ++  GI+I    +   + +SQ++Y+ K+LS++ + N      P    I+             ED   P  S +G LMY+MLCTRP++  A  I
Subjt:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVEDRRIPYASAVGSLMYVMLCTRPNICYAFGI

Query:  VSR
        +SR
Subjt:  VSR

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.9e-20

48.6

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Query:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVEDR----RIPYASAVGSLMYVMLCTRPNICY
        MKDLG AQ + G++IVR R ++ L +SQ  YI+++L R+ + N+K    P    + LSKK CP T   VE++    ++PY+SAVGSLMY M+CTRP+I +
Subjt:  MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVEDR----RIPYASAVGSLMYVMLCTRPNICY

Query:  AFGIVSR
        A G+VSR
Subjt:  AFGIVSR

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGGATTTGGGAGAGGCTCAGTATGTTTCTGGAATTCAGATAGTTCGGAATCGTAAGAACAAAATGTTAGCCATGTCTCAAGCATCATATATTGACAAAATGTTGTC
TAGATATAAGATACATAATTCCAAAAGAAGTCTACTACCGTTTAGACATGGAATTCATTTGTCAAAGAAACAGTGTCCTAAGACACCTCAAGTAGTTGAGGATAGACGTA
TTCCCTATGCATCAGCAGTCGGTAGTTTGATGTATGTCATGTTGTGTACACGACCTAACATATGCTATGCATTTGGGATTGTTAGTAGGTGTTGTAAGACAGATCTCAAG
TCCCCGGCAACGGCGCCAAAAACTTGTTGTGAAACGGATTGTGAATTGAAATTGTATTAA

mRNA sequence

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Protein sequence

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MKDLGEAQYVSGIQIVRNRKNKMLAMSQASYIDKMLSRYKIHNSKRSLLPFRHGIHLSKKQCPKTPQVVEDRRIPYASAVGSLMYVMLCTRPNICYAFGIVSRCCKTDLK
SPATAPKTCCETDCELKLY

Clc09G15380 (gene) of Watermelon (cordophanus) v2 genome