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Clc09G15810 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G15810
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationClcChr09:23316729..23317380
RNA-Seq ExpressionClc09G15810
SyntenyClc09G15810
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONI01138.1 hypothetical protein PRUPE_6G123900 [Prunus persica]4.7e-0539.53Show/hide
Query:  MNKALLAPFSEEEVKKTLFQ---------------------------TVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFR
        MN  LL  F+ EE++ TLFQ                             + CL++LNGE SVREFNHT   LIPK+K P  V +FR
Subjt:  MNKALLAPFSEEEVKKTLFQ---------------------------TVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFR

ONI09819.1 hypothetical protein PRUPE_4G011200 [Prunus persica]2.8e-0539.53Show/hide
Query:  MNKALLAPFSEEEVKKTLFQ---------------------------TVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFR
        MN  LL  F+ EE++ TLFQ                             + CL++LNGE SVREFNHT   LIPK+K P  V +FR
Subjt:  MNKALLAPFSEEEVKKTLFQ---------------------------TVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFR

ONI29413.1 hypothetical protein PRUPE_1G197300 [Prunus persica]8.0e-0538.37Show/hide
Query:  MNKALLAPFSEEEVKKTLFQ---------------------------TVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFR
        MN+ L+ PF+  E+++ L Q                             +ACLR+LNGE SVR+FNHT   LIPKI  P  V DFR
Subjt:  MNKALLAPFSEEEVKKTLFQ---------------------------TVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFR

TXG60318.1 hypothetical protein EZV62_014891 [Acer yangbiense]1.8e-0442.03Show/hide
Query:  QTVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFRRQLQTNLKGFYRSAFLRIRARLSPNFASL
        + +  CL +LNGEAS+REFNHT+  LIPK+ +P  + DFR     ++   Y+     I ARL P   S+
Subjt:  QTVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFRRQLQTNLKGFYRSAFLRIRARLSPNFASL

VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]2.8e-0539.53Show/hide
Query:  MNKALLAPFSEEEVKKTLFQ---------------------------TVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFR
        MN  LL  F+ EE++ TLFQ                             + CL++LNGE SVREFNHT   LIPK+K P  V +FR
Subjt:  MNKALLAPFSEEEVKKTLFQ---------------------------TVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFR

TrEMBL top hitse value%identityAlignment
A0A251NPF0 Reverse transcriptase domain-containing protein2.3e-0539.53Show/hide
Query:  MNKALLAPFSEEEVKKTLFQ---------------------------TVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFR
        MN  LL  F+ EE++ TLFQ                             + CL++LNGE SVREFNHT   LIPK+K P  V +FR
Subjt:  MNKALLAPFSEEEVKKTLFQ---------------------------TVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFR

A0A5E4FZN9 PREDICTED: retrotransposon1.3e-0539.53Show/hide
Query:  MNKALLAPFSEEEVKKTLFQ---------------------------TVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFR
        MN  LL  F+ EE++ TLFQ                             + CL++LNGE SVREFNHT   LIPK+K P  V +FR
Subjt:  MNKALLAPFSEEEVKKTLFQ---------------------------TVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFR

M5W5F3 Reverse transcriptase domain-containing protein (Fragment)2.3e-0539.53Show/hide
Query:  MNKALLAPFSEEEVKKTLFQ---------------------------TVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFR
        MN  LL  F+ EE++ TLFQ                             + CL++LNGE SVREFNHT   LIPK+K P  V +FR
Subjt:  MNKALLAPFSEEEVKKTLFQ---------------------------TVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFR

M5WJW2 Reverse transcriptase domain-containing protein1.3e-0539.53Show/hide
Query:  MNKALLAPFSEEEVKKTLFQ---------------------------TVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFR
        MN  LL  F+ EE++ TLFQ                             + CL++LNGE SVREFNHT   LIPK+K P  V +FR
Subjt:  MNKALLAPFSEEEVKKTLFQ---------------------------TVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFR

M5XK99 Uncharacterized protein3.9e-0538.37Show/hide
Query:  MNKALLAPFSEEEVKKTLFQ---------------------------TVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFR
        MN+ L+ PF+  E+++ L Q                             +ACLR+LNGE SVR+FNHT   LIPKI  P  V DFR
Subjt:  MNKALLAPFSEEEVKKTLFQ---------------------------TVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAAAGCTTTGTTGGCTCCTTTTTCGGAGGAGGAGGTTAAGAAGACCTTATTTCAGACAGTCGAAGCATGCCTTAGAGTCCTTAACGGTGAGGCGTCTGTCAGAGA
ATTTAATCATACCTACACTACCCTCATTCCGAAAATTAAAAATCCAGTGGAGGTGTTGGATTTTCGCAGACAATTGCAAACAAACTTAAAGGGATTCTATAGGAGTGCAT
TTCTGAGAATCAGAGCGCGTTTATCCCCGAATTTCGCGTCGTTGCCCCACGATCTCTCACTTGCTGTTCGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATAAAGCTTTGTTGGCTCCTTTTTCGGAGGAGGAGGTTAAGAAGACCTTATTTCAGACAGTCGAAGCATGCCTTAGAGTCCTTAACGGTGAGGCGTCTGTCAGAGA
ATTTAATCATACCTACACTACCCTCATTCCGAAAATTAAAAATCCAGTGGAGGTGTTGGATTTTCGCAGACAATTGCAAACAAACTTAAAGGGATTCTATAGGAGTGCAT
TTCTGAGAATCAGAGCGCGTTTATCCCCGAATTTCGCGTCGTTGCCCCACGATCTCTCACTTGCTGTTCGCTGA
Protein sequenceShow/hide protein sequence
MNKALLAPFSEEEVKKTLFQTVEACLRVLNGEASVREFNHTYTTLIPKIKNPVEVLDFRRQLQTNLKGFYRSAFLRIRARLSPNFASLPHDLSLAVR