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Clc09G16100 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G16100
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr09:24803052..24803478
RNA-Seq ExpressionClc09G16100
SyntenyClc09G16100
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039608.1 reverse transcriptase [Cucumis melo var. makuwa]7.4e-0435.42Show/hide
Query:  MNREYRTSRLPMQQPNDYLISIMTPKIQNDSRLPRAEEIKIAAQALLEMLEEIRTLMEIESPTNPLNRGMGIFGEGLANRTITTIPYSASYAKDHI
        MN+E++TSR    QPN  L  + T KI++  ++P  EE+   AQ LL++ E    LMEI    +P+NR +   GE    R    +   ASY +  +
Subjt:  MNREYRTSRLPMQQPNDYLISIMTPKIQNDSRLPRAEEIKIAAQALLEMLEEIRTLMEIESPTNPLNRGMGIFGEGLANRTITTIPYSASYAKDHI
TrEMBL top hitse value%identityAlignment
A0A5A7T9P9 Reverse transcriptase3.6e-0435.42Show/hide
Query:  MNREYRTSRLPMQQPNDYLISIMTPKIQNDSRLPRAEEIKIAAQALLEMLEEIRTLMEIESPTNPLNRGMGIFGEGLANRTITTIPYSASYAKDHI
        MN+E++TSR    QPN  L  + T KI++  ++P  EE+   AQ LL++ E    LMEI    +P+NR +   GE    R    +   ASY +  +
Subjt:  MNREYRTSRLPMQQPNDYLISIMTPKIQNDSRLPRAEEIKIAAQALLEMLEEIRTLMEIESPTNPLNRGMGIFGEGLANRTITTIPYSASYAKDHI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAGAGAATACAGGACCTCACGTTTGCCTATGCAGCAGCCGAACGATTATTTGATCTCAATAATGACTCCCAAGATCCAAAACGACAGTCGACTCCCTCGAGCGGA
GGAAATAAAAATAGCCGCGCAAGCCCTCCTCGAAATGTTGGAGGAGATAAGAACTCTAATGGAGATCGAAAGCCCTACCAACCCCCTCAACAGAGGAATGGGAATATTTG
GCGAGGGCCTAGCTAACAGAACAATCACTACCATCCCTTACAGTGCTTCATATGCAAAGGACCACATAGGAGGAGGGGGATACCCCGAATGGGAGCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAGAGAATACAGGACCTCACGTTTGCCTATGCAGCAGCCGAACGATTATTTGATCTCAATAATGACTCCCAAGATCCAAAACGACAGTCGACTCCCTCGAGCGGA
GGAAATAAAAATAGCCGCGCAAGCCCTCCTCGAAATGTTGGAGGAGATAAGAACTCTAATGGAGATCGAAAGCCCTACCAACCCCCTCAACAGAGGAATGGGAATATTTG
GCGAGGGCCTAGCTAACAGAACAATCACTACCATCCCTTACAGTGCTTCATATGCAAAGGACCACATAGGAGGAGGGGGATACCCCGAATGGGAGCGTTGA
Protein sequenceShow/hide protein sequence
MNREYRTSRLPMQQPNDYLISIMTPKIQNDSRLPRAEEIKIAAQALLEMLEEIRTLMEIESPTNPLNRGMGIFGEGLANRTITTIPYSASYAKDHIGGGGYPEWER