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Clc09G16440 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G16440
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationClcChr09:25634499..25634753
RNA-Seq ExpressionClc09G16440
SyntenyClc09G16440
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0050790 - regulation of catalytic activity (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0005096 - GTPase activator activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN61703.1 hypothetical protein VITISV_026977 [Vitis vinifera]2.7e-2563.1Show/hide
Query:  MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        +PM+++ DNKA+I+IAHNP+LHD  KH++VDKHF+ EK++ G+IC  Y+PT EQ+AD+LTKGLPK QF+KL+ KL M DIFK A
Subjt:  MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

KAA0061370.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.0e-2776.83Show/hide
Query:  MRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        +RIY DNKA+ISI HNPVLHD  KHI+VDKHFI EKI AG IC+PYLPT EQI DVLTKGLPK QF++LIDKL M DIFK A
Subjt:  MRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

RVW80855.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]9.3e-2665.48Show/hide
Query:  MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        +PM+++ DNKA I+I HNPVLHD  KH++VDKHFI EK++ G+I +PY+PT EQ+AD+LTKGLPK QF+ L+ KL MNDIFKLA
Subjt:  MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

RVX09086.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]3.6e-2566.27Show/hide
Query:  PMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        PM++Y+DNKA+IS+ HNPVLHD  KH++VDKHFI EKID G++C+ Y+PT EQ+ADV TKGL K QFN L+ KL M DIFK A
Subjt:  PMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

XP_040996179.1 uncharacterized protein LOC121242374 [Juglans microcarpa x Juglans regia]2.7e-2567.86Show/hide
Query:  MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        +PM++Y DNKA+ISIAHNPVLHD  KH++VD+HFI EK+D+G+IC+PY+ T EQIADV TKGL K QF+ L+ KLTM DIFK A
Subjt:  MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

TrEMBL top hitse value%identityAlignment
A0A1S8ACK5 Cysteine-rich RLK RECEPTOR-like protein kinase7.7e-2667.86Show/hide
Query:  MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        +P++IY DNKA+ISIAHNPVLHD  KHI+VDKHFI EKI++GVIC+PY+PT +QIAD+LTKGL K  F  L+ KL M DI+K A
Subjt:  MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

A0A2N9EE05 Uncharacterized protein2.7e-2669.05Show/hide
Query:  MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        +PM++Y DNKA+ISIAHNPVLHD  KH++VDKHFI EK+++G+IC+PY+PT EQIADV TKGL K QF+ L+ KLTM DIFK A
Subjt:  MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

A0A2N9G304 Reverse transcriptase Ty1/copia-type domain-containing protein2.7e-2667.86Show/hide
Query:  MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        +PM++Y DNKA+ISIAHNPVLHD  KH++VDKHFI EK+++G+IC+PY+PT EQIAD+ TKGL K QF+ L+ KLTM DIFK A
Subjt:  MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

A0A438H8N5 Retrovirus-related Pol polyprotein from transposon RE14.5e-2665.48Show/hide
Query:  MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        +PM+++ DNKA I+I HNPVLHD  KH++VDKHFI EK++ G+I +PY+PT EQ+AD+LTKGLPK QF+ L+ KL MNDIFKLA
Subjt:  MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

A0A5D3CT98 Putative mitochondrial protein2.4e-2776.83Show/hide
Query:  MRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA
        +RIY DNKA+ISI HNPVLHD  KHI+VDKHFI EKI AG IC+PYLPT EQI DVLTKGLPK QF++LIDKL M DIFK A
Subjt:  MRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.9e-1448.65Show/hide
Query:  PMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKL
        P++IY DN+  ISIA+NP  H   KHI +  HF  E++   VIC+ Y+PT  Q+AD+ TK LP  +F +L DKL
Subjt:  PMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-0434.38Show/hide
Query:  IYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQF
        +Y D++++I ++ N + H   KHI V  H+I E +D   + +  + T E  AD+LTK +P+ +F
Subjt:  IYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQF

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.8e-0937.84Show/hide
Query:  PMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKL
        P  IY DN  +  +  NPV H  MKHI +D HFI  ++ +G + + ++ T +Q+AD LTK L +  F     K+
Subjt:  PMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.4e-0837.84Show/hide
Query:  PMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKL
        P  IY DN  +  +  NPV H  MKHI +D HFI  ++ +G + + ++ T +Q+AD LTK L +  F     K+
Subjt:  PMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATGCGCATTTACTATGATAACAAGGCATCAATCTCCATTGCCCACAATCCAGTCCTTCATGATATTATGAAACATATTAAAGTCGATAAACATTTTATAAACGA
GAAGATTGATGCAGGAGTAATATGCATTCCCTACCTTCCGACAACAGAGCAAATTGCAGATGTATTAACTAAAGGTCTTCCTAAGTGGCAATTCAACAAGTTGATTGACA
AGCTAACCATGAATGATATCTTCAAACTAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCATGCGCATTTACTATGATAACAAGGCATCAATCTCCATTGCCCACAATCCAGTCCTTCATGATATTATGAAACATATTAAAGTCGATAAACATTTTATAAACGA
GAAGATTGATGCAGGAGTAATATGCATTCCCTACCTTCCGACAACAGAGCAAATTGCAGATGTATTAACTAAAGGTCTTCCTAAGTGGCAATTCAACAAGTTGATTGACA
AGCTAACCATGAATGATATCTTCAAACTAGCTTGA
Protein sequenceShow/hide protein sequence
MPMRIYYDNKASISIAHNPVLHDIMKHIKVDKHFINEKIDAGVICIPYLPTTEQIADVLTKGLPKWQFNKLIDKLTMNDIFKLA