; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc09G16650 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G16650
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr09:26293994..26294422
RNA-Seq ExpressionClc09G16650
SyntenyClc09G16650
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-5474.47Show/hide
Query:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES
        LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSSTG++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW ++
Subjt:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES

Query:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK
        +++ARA LE+ASK MKKWAD KR PLEF++ D+VLIKLRP+
Subjt:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-5474.47Show/hide
Query:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES
        LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSSTG++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW ++
Subjt:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES

Query:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK
        +++ARA LE+ASK MKKWAD KR PLEF++ D+VLIKLRP+
Subjt:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-5474.47Show/hide
Query:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES
        LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSSTG++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW ++
Subjt:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES

Query:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK
        +++ARA LE+ASK MKKWAD KR PLEF++ D+VLIKLRP+
Subjt:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-5474.47Show/hide
Query:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES
        LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSSTG++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW ++
Subjt:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES

Query:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK
        +++ARA LE+ASK MKKWAD KR PLEF++ D+VLIKLRP+
Subjt:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK

TYK28713.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-5474.47Show/hide
Query:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES
        LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSSTG++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW ++
Subjt:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES

Query:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK
        +++ARA LE+ASK MKKWAD KR PLEF++ D+VLIKLRP+
Subjt:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK

TrEMBL top hitse value%identityAlignment
A0A5A7T0E2 Reverse transcriptase7.8e-5574.47Show/hide
Query:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES
        LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSSTG++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW ++
Subjt:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES

Query:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK
        +++ARA LE+ASK MKKWAD KR PLEF++ D+VLIKLRP+
Subjt:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK

A0A5A7UXR6 Reverse transcriptase7.8e-5574.47Show/hide
Query:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES
        LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSSTG++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW ++
Subjt:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES

Query:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK
        +++ARA LE+ASK MKKWAD KR PLEF++ D+VLIKLRP+
Subjt:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK

A0A5D3B7E7 Reverse transcriptase7.8e-5574.47Show/hide
Query:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES
        LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSSTG++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW ++
Subjt:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES

Query:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK
        +++ARA LE+ASK MKKWAD KR PLEF++ D+VLIKLRP+
Subjt:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK

A0A5D3BRZ6 Reverse transcriptase7.8e-5574.47Show/hide
Query:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES
        LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSSTG++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW ++
Subjt:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES

Query:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK
        +++ARA LE+ASK MKKWAD KR PLEF++ D+VLIKLRP+
Subjt:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK

A0A5D3C4R1 Reverse transcriptase7.8e-5574.47Show/hide
Query:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES
        LG++LNISSSYHPQTD QTE FNSMLEEYLRHF++ARQKNWVQ+LDVAQF FN+Q SSSTG++PFEIV GRQP + H+VDHP+AGK+PQA NFTKEW ++
Subjt:  LGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNES

Query:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK
        +++ARA LE+ASK MKKWAD KR PLEF++ D+VLIKLRP+
Subjt:  SEVARACLERASKCMKKWADMKRMPLEFQSRDKVLIKLRPK

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein8.2e-0932.09Show/hide
Query:  LNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVA
        +  S  Y PQTD QTE  N  +E+ LR         WV  + + Q S+N+   S+T  TPFEIV    P +S +    ++ K+ +    ++E  +  +  
Subjt:  LNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVA

Query:  RACLERASKCMKKWADMKRMPL-EFQSRDKVLIK
        +  L   +  MKK+ DMK   + EFQ  D V++K
Subjt:  RACLERASKCMKKWADMKRMPL-EFQSRDKVLIK

P0CT35 Transposon Tf2-2 polyprotein8.2e-0932.09Show/hide
Query:  LNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVA
        +  S  Y PQTD QTE  N  +E+ LR         WV  + + Q S+N+   S+T  TPFEIV    P +S +    ++ K+ +    ++E  +  +  
Subjt:  LNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVA

Query:  RACLERASKCMKKWADMKRMPL-EFQSRDKVLIK
        +  L   +  MKK+ DMK   + EFQ  D V++K
Subjt:  RACLERASKCMKKWADMKRMPL-EFQSRDKVLIK

P0CT36 Transposon Tf2-3 polyprotein8.2e-0932.09Show/hide
Query:  LNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVA
        +  S  Y PQTD QTE  N  +E+ LR         WV  + + Q S+N+   S+T  TPFEIV    P +S +    ++ K+ +    ++E  +  +  
Subjt:  LNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVA

Query:  RACLERASKCMKKWADMKRMPL-EFQSRDKVLIK
        +  L   +  MKK+ DMK   + EFQ  D V++K
Subjt:  RACLERASKCMKKWADMKRMPL-EFQSRDKVLIK

P0CT41 Transposon Tf2-12 polyprotein8.2e-0932.09Show/hide
Query:  LNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVA
        +  S  Y PQTD QTE  N  +E+ LR         WV  + + Q S+N+   S+T  TPFEIV    P +S +    ++ K+ +    ++E  +  +  
Subjt:  LNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVA

Query:  RACLERASKCMKKWADMKRMPL-EFQSRDKVLIK
        +  L   +  MKK+ DMK   + EFQ  D V++K
Subjt:  RACLERASKCMKKWADMKRMPL-EFQSRDKVLIK

Q9UR07 Transposon Tf2-11 polyprotein8.2e-0932.09Show/hide
Query:  LNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVA
        +  S  Y PQTD QTE  N  +E+ LR         WV  + + Q S+N+   S+T  TPFEIV    P +S +    ++ K+ +    ++E  +  +  
Subjt:  LNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVA

Query:  RACLERASKCMKKWADMKRMPL-EFQSRDKVLIK
        +  L   +  MKK+ DMK   + EFQ  D V++K
Subjt:  RACLERASKCMKKWADMKRMPL-EFQSRDKVLIK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGGTTCAACATTGAATATTTCCTCCAGCTATCATCCACAAACTGATTGGCAGACAGAACACTTCAATAGTATGCTCGAGGAGTATCTCCGTCACTTTATTGATGC
GAGACAGAAAAATTGGGTCCAGATGTTGGATGTAGCTCAGTTTAGCTTTAACAGCCAGAAAAGTTCTTCCACGGGTAAGACACCTTTTGAGATTGTGTGTGGTAGACAAC
CATTCATGTCGCACGTCGTTGACCACCCCTATGCGGGTAAGAGCCCGCAAGCACACAACTTCACCAAAGAATGGAACGAGTCCTCAGAGGTAGCACGTGCATGTTTGGAG
AGAGCATCGAAGTGCATGAAGAAGTGGGCAGATATGAAGCGCATGCCCCTCGAGTTCCAATCTAGAGACAAAGTACTGATTAAGCTGCGCCCGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGGTTCAACATTGAATATTTCCTCCAGCTATCATCCACAAACTGATTGGCAGACAGAACACTTCAATAGTATGCTCGAGGAGTATCTCCGTCACTTTATTGATGC
GAGACAGAAAAATTGGGTCCAGATGTTGGATGTAGCTCAGTTTAGCTTTAACAGCCAGAAAAGTTCTTCCACGGGTAAGACACCTTTTGAGATTGTGTGTGGTAGACAAC
CATTCATGTCGCACGTCGTTGACCACCCCTATGCGGGTAAGAGCCCGCAAGCACACAACTTCACCAAAGAATGGAACGAGTCCTCAGAGGTAGCACGTGCATGTTTGGAG
AGAGCATCGAAGTGCATGAAGAAGTGGGCAGATATGAAGCGCATGCCCCTCGAGTTCCAATCTAGAGACAAAGTACTGATTAAGCTGCGCCCGAAATAG
Protein sequenceShow/hide protein sequence
MLGSTLNISSSYHPQTDWQTEHFNSMLEEYLRHFIDARQKNWVQMLDVAQFSFNSQKSSSTGKTPFEIVCGRQPFMSHVVDHPYAGKSPQAHNFTKEWNESSEVARACLE
RASKCMKKWADMKRMPLEFQSRDKVLIKLRPK