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Clc09G16910 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G16910
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationClcChr09:27054694..27064079
RNA-Seq ExpressionClc09G16910
SyntenyClc09G16910
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066908.1 mitochondrial phosphate carrier protein 3 [Cucumis melo var. makuwa]6.7e-2333.46Show/hide
Query:  GVEGRILEPFKVGAKEVNLSHLQFADDKIFFCLGKEESFLILNHTLGFFEAMSGLNINR------IYSLRVTR------------ELSPFGMFLQRRLGR
        GV+G I+E FK+G  EV LSHLQFADD + FC GKEESFLIL H + FFE  SGL INR      ++ +   +            E+  F  F  R L R
Subjt:  GVEGRILEPFKVGAKEVNLSHLQFADDKIFFCLGKEESFLILNHTLGFFEAMSGLNINR------IYSLRVTR------------ELSPFGMFLQRRLGR

Query:  AH-------------------------------LFQFARVLEKLDVEEGKGSHLVGEKECACLECESC----GGFYLQVFFQAYAQPVLL----------
         +                               L     +L ++ +  G+     GE        +S     GG   QV F  +   VLL          
Subjt:  AH-------------------------------LFQFARVLEKLDVEEGKGSHLVGEKECACLECESC----GGFYLQVFFQAYAQPVLL----------

Query:  -----------WNDLLQQFDISLAKQRDVCLLIGEFLLHPPFKEKGCFLLWTGVCAILWDLLGKRNNSV
                   W+   Q+F  S A  R V  +I EFLLH PF++KG FL   GVCA++WD+ GKRN+ V
Subjt:  -----------WNDLLQQFDISLAKQRDVCLLIGEFLLHPPFKEKGCFLLWTGVCAILWDLLGKRNNSV

RVW78844.1 hypothetical protein CK203_043107, partial [Vitis vinifera]7.2e-1742.98Show/hide
Query:  LTANEAIEDYRVQNKEGVIFKIDFDKAYDHVNWDFLDRVMDKKVFG-----------------GVEGRILEPFKVGAKEVNLSHLQFADDKIFFCLGKEE
        L ANE +++ +   +EGV+FKIDF+KAYDHV WDFLD V++KK F                    E  +LE F+VG     ++HLQFADD I F   +EE
Subjt:  LTANEAIEDYRVQNKEGVIFKIDFDKAYDHVNWDFLDRVMDKKVFG-----------------GVEGRILEPFKVGAKEVNLSHLQFADDKIFFCLGKEE

Query:  SFLILNHTLGFFEAMSGLNIN
         F  L   L  F  +SGL +N
Subjt:  SFLILNHTLGFFEAMSGLNIN

RVW78846.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.5e-1737.65Show/hide
Query:  LTANEAIEDYRVQNKEGVIFKIDFDKAYDHVNWDFLDRVMDKKVF----------------------GGVEG---------RILEPFKVGAKEVNLSHLQ
        L ANE +++ +   +EGV+FKIDF+KAYDHV+WDFLD VM+KK F                      G  +G          + E FKVG     +SHLQ
Subjt:  LTANEAIEDYRVQNKEGVIFKIDFDKAYDHVNWDFLDRVMDKKVF----------------------GGVEG---------RILEPFKVGAKEVNLSHLQ

Query:  FADDKIFFCLGKEESFLILNHTLGFFEAMSGLNINRIYSLRVTRELSPFGMFLQRRLGRAHLFQFARVLE
        FADD IFF   +EE  L L   L  F  +SGL +N   S       + +G+     LG+ HL + A +L+
Subjt:  FADDKIFFCLGKEESFLILNHTLGFFEAMSGLNINRIYSLRVTRELSPFGMFLQRRLGRAHLFQFARVLE

RVW81815.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.2e-1638.04Show/hide
Query:  LTANEAIEDYRVQNKEGVIFKIDFDKAYDHVNWDFLDRVMDKKVF----------------------GGVEG--RILEPFKVGAKEVNLSHLQFADDKIF
        L ANE +++ R   +EGV+FKIDF+KAYDHV WDFLD+V++KK F                      G  +G   +LE F+VG     +SHLQF+DD IF
Subjt:  LTANEAIEDYRVQNKEGVIFKIDFDKAYDHVNWDFLDRVMDKKVF----------------------GGVEG--RILEPFKVGAKEVNLSHLQFADDKIF

Query:  FCLGKEESFLILNHTLGFFEAMSGLNINRIYSLRVTRELSPFGMFLQRRLGRAHLFQFARVLE
        F   +EE    L   L  F  +SGL +N   S       + +G+     L +AH+ + A  LE
Subjt:  FCLGKEESFLILNHTLGFFEAMSGLNINRIYSLRVTRELSPFGMFLQRRLGRAHLFQFARVLE

RVW93986.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.2e-1641.04Show/hide
Query:  LTANEAIEDYRVQNKEGVIFKIDFDKAYDHVNWDFLDRVMDKKVF----------------------GGVEGRI--------LEPFKVGAKEVNLSHLQF
        L  NE +++ R   +EGV+FKIDF+KAYDHV+WDFLD V++KK F                      G ++G +        LE F+V      +SHLQF
Subjt:  LTANEAIEDYRVQNKEGVIFKIDFDKAYDHVNWDFLDRVMDKKVF----------------------GGVEGRI--------LEPFKVGAKEVNLSHLQF

Query:  ADDKIFFCLGKEESFLILNHTLGFFEAMSGLNIN
        ADD IFF   +EE  L LN  L  F  +SGL +N
Subjt:  ADDKIFFCLGKEESFLILNHTLGFFEAMSGLNIN

TrEMBL top hitse value%identityAlignment
A0A438CRE7 Transposon TX1 uncharacterized 149 kDa protein6.0e-1736.69Show/hide
Query:  LTANEAIEDYRVQNKEGVIFKIDFDKAYDHVNWDFLDRVMDKKVFG------------------------------GVEGRILEPFKVGAKEVNLSHLQF
        L ANE +++ R   +EGV+FKIDF+KAYDHV WDFLD V++KK F                                 E  +LE F+VG     +SHLQF
Subjt:  LTANEAIEDYRVQNKEGVIFKIDFDKAYDHVNWDFLDRVMDKKVFG------------------------------GVEGRILEPFKVGAKEVNLSHLQF

Query:  ADDKIFFCLGKEESFLILNHTLGFFEAMSGLNINRIYSLRVTRELSPFGMFLQRRLGRAHLFQFARVLE
        ADD IFF   +EE    L   L  F  +SGL +N         + S +G+     L +AHL + A +L+
Subjt:  ADDKIFFCLGKEESFLILNHTLGFFEAMSGLNINRIYSLRVTRELSPFGMFLQRRLGRAHLFQFARVLE

A0A438H2J4 Reverse transcriptase domain-containing protein (Fragment)3.5e-1742.98Show/hide
Query:  LTANEAIEDYRVQNKEGVIFKIDFDKAYDHVNWDFLDRVMDKKVFG-----------------GVEGRILEPFKVGAKEVNLSHLQFADDKIFFCLGKEE
        L ANE +++ +   +EGV+FKIDF+KAYDHV WDFLD V++KK F                    E  +LE F+VG     ++HLQFADD I F   +EE
Subjt:  LTANEAIEDYRVQNKEGVIFKIDFDKAYDHVNWDFLDRVMDKKVFG-----------------GVEGRILEPFKVGAKEVNLSHLQFADDKIFFCLGKEE

Query:  SFLILNHTLGFFEAMSGLNIN
         F  L   L  F  +SGL +N
Subjt:  SFLILNHTLGFFEAMSGLNIN

A0A438H2J5 Transposon TX1 uncharacterized 149 kDa protein7.0e-1837.65Show/hide
Query:  LTANEAIEDYRVQNKEGVIFKIDFDKAYDHVNWDFLDRVMDKKVF----------------------GGVEG---------RILEPFKVGAKEVNLSHLQ
        L ANE +++ +   +EGV+FKIDF+KAYDHV+WDFLD VM+KK F                      G  +G          + E FKVG     +SHLQ
Subjt:  LTANEAIEDYRVQNKEGVIFKIDFDKAYDHVNWDFLDRVMDKKVF----------------------GGVEG---------RILEPFKVGAKEVNLSHLQ

Query:  FADDKIFFCLGKEESFLILNHTLGFFEAMSGLNINRIYSLRVTRELSPFGMFLQRRLGRAHLFQFARVLE
        FADD IFF   +EE  L L   L  F  +SGL +N   S       + +G+     LG+ HL + A +L+
Subjt:  FADDKIFFCLGKEESFLILNHTLGFFEAMSGLNINRIYSLRVTRELSPFGMFLQRRLGRAHLFQFARVLE

A0A438IB95 Transposon TX1 uncharacterized 149 kDa protein6.0e-1741.04Show/hide
Query:  LTANEAIEDYRVQNKEGVIFKIDFDKAYDHVNWDFLDRVMDKKVF----------------------GGVEGRI--------LEPFKVGAKEVNLSHLQF
        L  NE +++ R   +EGV+FKIDF+KAYDHV+WDFLD V++KK F                      G ++G +        LE F+V      +SHLQF
Subjt:  LTANEAIEDYRVQNKEGVIFKIDFDKAYDHVNWDFLDRVMDKKVF----------------------GGVEGRI--------LEPFKVGAKEVNLSHLQF

Query:  ADDKIFFCLGKEESFLILNHTLGFFEAMSGLNIN
        ADD IFF   +EE  L LN  L  F  +SGL +N
Subjt:  ADDKIFFCLGKEESFLILNHTLGFFEAMSGLNIN

A0A5A7VGR5 Mitochondrial phosphate carrier protein 33.3e-2333.46Show/hide
Query:  GVEGRILEPFKVGAKEVNLSHLQFADDKIFFCLGKEESFLILNHTLGFFEAMSGLNINR------IYSLRVTR------------ELSPFGMFLQRRLGR
        GV+G I+E FK+G  EV LSHLQFADD + FC GKEESFLIL H + FFE  SGL INR      ++ +   +            E+  F  F  R L R
Subjt:  GVEGRILEPFKVGAKEVNLSHLQFADDKIFFCLGKEESFLILNHTLGFFEAMSGLNINR------IYSLRVTR------------ELSPFGMFLQRRLGR

Query:  AH-------------------------------LFQFARVLEKLDVEEGKGSHLVGEKECACLECESC----GGFYLQVFFQAYAQPVLL----------
         +                               L     +L ++ +  G+     GE        +S     GG   QV F  +   VLL          
Subjt:  AH-------------------------------LFQFARVLEKLDVEEGKGSHLVGEKECACLECESC----GGFYLQVFFQAYAQPVLL----------

Query:  -----------WNDLLQQFDISLAKQRDVCLLIGEFLLHPPFKEKGCFLLWTGVCAILWDLLGKRNNSV
                   W+   Q+F  S A  R V  +I EFLLH PF++KG FL   GVCA++WD+ GKRN+ V
Subjt:  -----------WNDLLQQFDISLAKQRDVCLLIGEFLLHPPFKEKGCFLLWTGVCAILWDLLGKRNNSV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTTTTTCTCAAACTCAGGCCCGACAGCGGACATGAGCAAGGCAAGATGTGAACAACTTGCAGCTAAATTTTATGGGCCATACAAAGTGTTGGAACGTGTGGGAGT
CATGGCCTATAAGCTGGAGTTACCACCAGAAGCATGCATACATGATGTTTTTCATGTTTCCCAGCTGAAGAAGTGTATCAGGACAGTTGCTCATGTCCAAAATCATCCAC
CCAGTCTCTCGGATGAGTTTGAATTACAGGAGCTCGATGAGAAGGAGGTGGAGGGCCTTTTGGACCAGGCCATGAAAGCTAAAAAGGATGGCCTTAAGAGGGAGATGGCT
AGTGGCAGGAGAAATATGAACTTCATAGGTCCTTTGATCAAAGGTAATGGGGAGAGGACCTTTAGTGATAAGGAAGTGGAAGAGGAGGCAAATTCTTGCGCTCTCACTGC
CAATGAGGCTATTGAGGACTATAGAGTTCAGAACAAGGAGGGTGTGATTTTTAAAATTGATTTCGACAAAGCCTACGACCATGTTAATTGGGATTTTCTAGACAGAGTGA
TGGACAAGAAAGTTTTTGGAGGGGTGGAAGGTAGAATCCTTGAGCCTTTTAAAGTGGGAGCGAAGGAAGTGAATCTGTCGCATTTACAATTTGCTGACGATAAGATATTT
TTCTGTTTGGGTAAAGAAGAGTCTTTCCTTATTTTGAACCATACTTTGGGCTTCTTTGAGGCAATGTCAGGGCTCAACATCAATAGGATCTACTCCTTGAGGGTAACCCG
AGAGCTATCTCCTTTTGGGATGTTCCTTCAGAGAAGATTAGGAAGAGCGCACCTGTTTCAGTTTGCAAGAGTGCTTGAGAAACTAGATGTGGAGGAAGGGAAAGGTTCTC
ATTTGGTTGGGGAGAAGGAATGTGCGTGTTTGGAGTGCGAGTCCTGCGGAGGGTTTTACTTGCAAGTCTTTTTTCAGGCTTATGCTCAACCCGTTCTCCTGTGGAACGAT
CTCCTTCAGCAGTTTGATATCTCATTGGCTAAGCAAAGAGATGTCTGCTTGTTGATTGGGGAGTTCCTTCTCCATCCGCCTTTCAAAGAGAAAGGTTGTTTTCTTTTATG
GACTGGGGTGTGTGCAATCTTGTGGGACCTTTTGGGGAAGAGGAACAATAGTGTTCAGGGGAGTGGAGAGGAACCCTGGGGAGGTGTTTGGTCCTTGAATTACCAAGGCT
TCCTTTTTCAAAAAACTCCCAAGTCTCAACATTTTTCAGAGGATGATTCTTCAATTAGCATAAGCAATGACGAAAATACAGAAATCTTAGCTTTCAAATCCATTCCAGTT
GAGGATCAGCTAGAAGAAGTCCAAGGGACAGAACTTGCTGCACTCTTTCAAAGCCCAGCTCTTAAAAAGTTTGATCAGATTTCTAGTGAGCTTTTTACTCCAATATCCCC
TTCTTTAATTCCCTCAAAATTTTCCTCTTTGATTAAAGGACGTGGTCTGGTTTTTGCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGTTTTTCTCAAACTCAGGCCCGACAGCGGACATGAGCAAGGCAAGATGTGAACAACTTGCAGCTAAATTTTATGGGCCATACAAAGTGTTGGAACGTGTGGGAGT
CATGGCCTATAAGCTGGAGTTACCACCAGAAGCATGCATACATGATGTTTTTCATGTTTCCCAGCTGAAGAAGTGTATCAGGACAGTTGCTCATGTCCAAAATCATCCAC
CCAGTCTCTCGGATGAGTTTGAATTACAGGAGCTCGATGAGAAGGAGGTGGAGGGCCTTTTGGACCAGGCCATGAAAGCTAAAAAGGATGGCCTTAAGAGGGAGATGGCT
AGTGGCAGGAGAAATATGAACTTCATAGGTCCTTTGATCAAAGGTAATGGGGAGAGGACCTTTAGTGATAAGGAAGTGGAAGAGGAGGCAAATTCTTGCGCTCTCACTGC
CAATGAGGCTATTGAGGACTATAGAGTTCAGAACAAGGAGGGTGTGATTTTTAAAATTGATTTCGACAAAGCCTACGACCATGTTAATTGGGATTTTCTAGACAGAGTGA
TGGACAAGAAAGTTTTTGGAGGGGTGGAAGGTAGAATCCTTGAGCCTTTTAAAGTGGGAGCGAAGGAAGTGAATCTGTCGCATTTACAATTTGCTGACGATAAGATATTT
TTCTGTTTGGGTAAAGAAGAGTCTTTCCTTATTTTGAACCATACTTTGGGCTTCTTTGAGGCAATGTCAGGGCTCAACATCAATAGGATCTACTCCTTGAGGGTAACCCG
AGAGCTATCTCCTTTTGGGATGTTCCTTCAGAGAAGATTAGGAAGAGCGCACCTGTTTCAGTTTGCAAGAGTGCTTGAGAAACTAGATGTGGAGGAAGGGAAAGGTTCTC
ATTTGGTTGGGGAGAAGGAATGTGCGTGTTTGGAGTGCGAGTCCTGCGGAGGGTTTTACTTGCAAGTCTTTTTTCAGGCTTATGCTCAACCCGTTCTCCTGTGGAACGAT
CTCCTTCAGCAGTTTGATATCTCATTGGCTAAGCAAAGAGATGTCTGCTTGTTGATTGGGGAGTTCCTTCTCCATCCGCCTTTCAAAGAGAAAGGTTGTTTTCTTTTATG
GACTGGGGTGTGTGCAATCTTGTGGGACCTTTTGGGGAAGAGGAACAATAGTGTTCAGGGGAGTGGAGAGGAACCCTGGGGAGGTGTTTGGTCCTTGAATTACCAAGGCT
TCCTTTTTCAAAAAACTCCCAAGTCTCAACATTTTTCAGAGGATGATTCTTCAATTAGCATAAGCAATGACGAAAATACAGAAATCTTAGCTTTCAAATCCATTCCAGTT
GAGGATCAGCTAGAAGAAGTCCAAGGGACAGAACTTGCTGCACTCTTTCAAAGCCCAGCTCTTAAAAAGTTTGATCAGATTTCTAGTGAGCTTTTTACTCCAATATCCCC
TTCTTTAATTCCCTCAAAATTTTCCTCTTTGATTAAAGGACGTGGTCTGGTTTTTGCGTAG
Protein sequenceShow/hide protein sequence
MWFFSNSGPTADMSKARCEQLAAKFYGPYKVLERVGVMAYKLELPPEACIHDVFHVSQLKKCIRTVAHVQNHPPSLSDEFELQELDEKEVEGLLDQAMKAKKDGLKREMA
SGRRNMNFIGPLIKGNGERTFSDKEVEEEANSCALTANEAIEDYRVQNKEGVIFKIDFDKAYDHVNWDFLDRVMDKKVFGGVEGRILEPFKVGAKEVNLSHLQFADDKIF
FCLGKEESFLILNHTLGFFEAMSGLNINRIYSLRVTRELSPFGMFLQRRLGRAHLFQFARVLEKLDVEEGKGSHLVGEKECACLECESCGGFYLQVFFQAYAQPVLLWND
LLQQFDISLAKQRDVCLLIGEFLLHPPFKEKGCFLLWTGVCAILWDLLGKRNNSVQGSGEEPWGGVWSLNYQGFLFQKTPKSQHFSEDDSSISISNDENTEILAFKSIPV
EDQLEEVQGTELAALFQSPALKKFDQISSELFTPISPSLIPSKFSSLIKGRGLVFA