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Clc09G17010 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G17010
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGag-Pol polyprotein
Genome locationClcChr09:27115311..27115646
RNA-Seq ExpressionClc09G17010
SyntenyClc09G17010
Gene Ontology termsGO:0010073 - meristem maintenance (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0045489 - pectin biosynthetic process (biological process)
GO:0019752 - carboxylic acid metabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0006508 - proteolysis (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005794 - Golgi apparatus (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0005506 - iron ion binding (molecular function)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (molecular function)
GO:0016830 - carbon-carbon lyase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0020037 - heme binding (molecular function)
GO:0030170 - pyridoxal phosphate binding (molecular function)
GO:0004497 - monooxygenase activity (molecular function)
GO:0047262 - polygalacturonate 4-alpha-galacturonosyltransferase activity (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8690146.1 hypothetical protein F3Y22_tig00110925pilonHSYRG00031 [Hibiscus syriacus]1.4e-1685.71Show/hide
Query:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
        MQDCKPIST LPINFK+SS+MSP SE ERMEMSRVPYAS VGSLMF MICTR DIA
Subjt:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
KAE8694358.1 hypothetical protein F3Y22_tig00110783pilonHSYRG00068 [Hibiscus syriacus]1.4e-1685.71Show/hide
Query:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
        MQDCKPIST LPINFK+SS+MSP SE ERMEMSRVPYAS VGSLMF MICTR DIA
Subjt:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
KAE8696710.1 Tyrosine decarboxylase 1 [Hibiscus syriacus]1.4e-1685.71Show/hide
Query:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
        MQDCKPIST LPINFK+SS+MSP SE ERMEMSRVPYAS VGSLMF MICTR DIA
Subjt:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
KAE8725385.1 Desiccation-related protein PCC13-62 [Hibiscus syriacus]1.4e-1685.71Show/hide
Query:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
        MQDCKPIST LPINFK+SS+MSP SE ERMEMSRVPYAS VGSLMF MICTR DIA
Subjt:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
KAE8733847.1 hypothetical protein F3Y22_tig00000916pilonHSYRG00052 [Hibiscus syriacus]1.4e-1685.71Show/hide
Query:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
        MQDCKPIST LPINFK+SS+MSP SE ERMEMSRVPYAS VGSLMF MICTR DIA
Subjt:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
TrEMBL top hitse value%identityAlignment
A0A6A2X6X8 Alpha/beta-Hydrolases superfamily protein isoform 16.6e-1785.71Show/hide
Query:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
        MQDCKPIST LPINFK+SS+MSP SE ERMEMSRVPYAS VGSLMF MICTR DIA
Subjt:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
A0A6A2ZEV8 Uncharacterized protein6.6e-1785.71Show/hide
Query:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
        MQDCKPIST LPINFK+SS+MSP SE ERMEMSRVPYAS VGSLMF MICTR DIA
Subjt:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
A0A6A2ZR59 CCHC-type domain-containing protein6.6e-1785.71Show/hide
Query:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
        MQDCKPIST LPINFK+SS+MSP SE ERMEMSRVPYAS VGSLMF MICTR DIA
Subjt:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
A0A6A3C800 Desiccation-related protein PCC13-626.6e-1785.71Show/hide
Query:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
        MQDCKPIST LPINFK+SS+MSP SE ERMEMSRVPYAS VGSLMF MICTR DIA
Subjt:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
A0A6A3CZB8 Uncharacterized protein6.6e-1785.71Show/hide
Query:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
        MQDCKPIST LPINFK+SS+MSP SE ERMEMSRVPYAS VGSLMF MICTR DIA
Subjt:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIA
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.2e-0950.88Show/hide
Query:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIAH
        M++ KP+ST L  + K+S  M P +  E+  M++VPY+S VGSLM+ M+CTR DIAH
Subjt:  MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIAH
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGATTGTAAGCCAATTTCTACCTGTCTTCCTATTAATTTCAAGATATCCTCCAATATGAGCCCTTGCAGTGAAGCAGAGAGGATGGAAATGTCTCGAGTACCGTA
TGCATCAGTAGTGGGAAGTTTAATGTTCACCATGATTTGTACCAGACTAGACATTGCTCATCTGGAATATCTGTATGTAAGAGGATATGGAACTCAATATCGATTTGAAA
CGTCGAAGGGGTGCTCCATAGCGAAAACGGAGACTGCTTCTAGCCAACATCGGCTATGGATCACGCCCATCATCATAAGGGCATCGCAGTATAGGGTTGCCAATCGTGAC
ATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGATTGTAAGCCAATTTCTACCTGTCTTCCTATTAATTTCAAGATATCCTCCAATATGAGCCCTTGCAGTGAAGCAGAGAGGATGGAAATGTCTCGAGTACCGTA
TGCATCAGTAGTGGGAAGTTTAATGTTCACCATGATTTGTACCAGACTAGACATTGCTCATCTGGAATATCTGTATGTAAGAGGATATGGAACTCAATATCGATTTGAAA
CGTCGAAGGGGTGCTCCATAGCGAAAACGGAGACTGCTTCTAGCCAACATCGGCTATGGATCACGCCCATCATCATAAGGGCATCGCAGTATAGGGTTGCCAATCGTGAC
ATTTGA
Protein sequenceShow/hide protein sequence
MQDCKPISTCLPINFKISSNMSPCSEAERMEMSRVPYASVVGSLMFTMICTRLDIAHLEYLYVRGYGTQYRFETSKGCSIAKTETASSQHRLWITPIIIRASQYRVANRD
I