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Clc09G17040 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G17040
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGag-Pol
Genome locationClcChr09:27120349..27123539
RNA-Seq ExpressionClc09G17040
SyntenyClc09G17040
Gene Ontology termsGO:0006468 - protein phosphorylation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0051171 - regulation of nitrogen compound metabolic process (biological process)
GO:0060255 - regulation of macromolecule metabolic process (biological process)
GO:0080090 - regulation of primary metabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044949.1 hypothetical protein E6C27_scaffold74G002510 [Cucumis melo var. makuwa]6.3e-2780Show/hide
Query:  MAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
        M  KF+IEKFNG NFSLWKLKMKA  R+DNCL AID+RPA+IT DNKWNEMD NA ANIHL L DNVLSSIEEKK+AKEI
Subjt:  MAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
KAA0067282.1 hypothetical protein E6C27_scaffold418G001030 [Cucumis melo var. makuwa]3.3e-2885Show/hide
Query:  MAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
        MAAKFEIEKFN  NFSLWKLKMKA LR+DNCL AID+RPA+IT DNKWNEMD NA ANIHL LADNVLSSIEEKK AKEI
Subjt:  MAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
TYK06685.1 Gag-Pol [Cucumis melo var. makuwa]1.4e-2984.34Show/hide
Query:  LEVMAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
        +EVMAAKFEIEKFN  NFSLWKLKMKA LR+DNCL AID+RPAKIT DNKWNEMD NA ANIHL LADNVLSSIEEKK  KEI
Subjt:  LEVMAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
TYK10895.1 hypothetical protein E5676_scaffold231G00690 [Cucumis melo var. makuwa]9.7e-2883.75Show/hide
Query:  MAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
        MAAKFEIEKFN  NFSLWKLKMKA LR+DNCL AID+RPA+IT DNKWNEMD NA ANIHL LADNVLSSIEEKK  KEI
Subjt:  MAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
TYK16527.1 hypothetical protein E5676_scaffold21G003420 [Cucumis melo var. makuwa]2.2e-2781.25Show/hide
Query:  MAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
        M  KF+IEKFNG NFSLWKLKMKA  R+DNCL AID+RPA+IT DNKWNEMD NA ANIHL LADNVLSSIEEKK+AKEI
Subjt:  MAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
TrEMBL top hitse value%identityAlignment
A0A5A7TUN0 Uncharacterized protein3.0e-2780Show/hide
Query:  MAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
        M  KF+IEKFNG NFSLWKLKMKA  R+DNCL AID+RPA+IT DNKWNEMD NA ANIHL L DNVLSSIEEKK+AKEI
Subjt:  MAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
A0A5A7VFY3 Uncharacterized protein1.6e-2885Show/hide
Query:  MAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
        MAAKFEIEKFN  NFSLWKLKMKA LR+DNCL AID+RPA+IT DNKWNEMD NA ANIHL LADNVLSSIEEKK AKEI
Subjt:  MAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
A0A5D3C5M6 Gag-Pol6.6e-3084.34Show/hide
Query:  LEVMAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
        +EVMAAKFEIEKFN  NFSLWKLKMKA LR+DNCL AID+RPAKIT DNKWNEMD NA ANIHL LADNVLSSIEEKK  KEI
Subjt:  LEVMAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
A0A5D3CH81 Uncharacterized protein4.7e-2883.75Show/hide
Query:  MAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
        MAAKFEIEKFN  NFSLWKLKMKA LR+DNCL AID+RPA+IT DNKWNEMD NA ANIHL LADNVLSSIEEKK  KEI
Subjt:  MAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
A0A5D3CXA6 Uncharacterized protein1.0e-2781.25Show/hide
Query:  MAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
        M  KF+IEKFNG NFSLWKLKMKA  R+DNCL AID+RPA+IT DNKWNEMD NA ANIHL LADNVLSSIEEKK+AKEI
Subjt:  MAAKFEIEKFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTCCTTGTTGAAGGAGTTTTGTCCAGTACGTGATTTGGTAAGAAGAAGCAAAGTATACCTGAAGTCGAACTTCGAAGCCGCTACCGTTGTGACGTCACCGCCTTC
AACATCATCCACAAGCTGTCATCCAACATCGTGTGCAAGGACACAACTGTTGATCACCGTCACCGCTGTTCGCTTGGCACACTCATCGTTTCTAGCCGTCAAAATTGTTT
TGCTCGTTTTCGGCCACTGTTCTGCTTGTCGTTTTTGTCCACCGTCGGAAGCTGCCATTTGCTCGCTGCGAAGTTGGTTGGAAGTAATGGCGGCAAAGTTCGAGATTGAG
AAGTTTAACGGAATTAATTTCTCGTTGTGGAAGTTGAAGATGAAGGCTTTCTTGAGAGAAGACAATTGCCTTGCAGCCATCGATGAGAGGCCGGCAAAAATCACATATGA
TAACAAGTGGAATGAGATGGACGAGAATGCTAGTGCAAACATTCATCTGCCATTGGCAGATAATGTCTTGTCAAGCATTGAGGAGAAGAAAGTTGCAAAGGAGATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATTCCTTGTTGAAGGAGTTTTGTCCAGTACGTGATTTGGTAAGAAGAAGCAAAGTATACCTGAAGTCGAACTTCGAAGCCGCTACCGTTGTGACGTCACCGCCTTC
AACATCATCCACAAGCTGTCATCCAACATCGTGTGCAAGGACACAACTGTTGATCACCGTCACCGCTGTTCGCTTGGCACACTCATCGTTTCTAGCCGTCAAAATTGTTT
TGCTCGTTTTCGGCCACTGTTCTGCTTGTCGTTTTTGTCCACCGTCGGAAGCTGCCATTTGCTCGCTGCGAAGTTGGTTGGAAGTAATGGCGGCAAAGTTCGAGATTGAG
AAGTTTAACGGAATTAATTTCTCGTTGTGGAAGTTGAAGATGAAGGCTTTCTTGAGAGAAGACAATTGCCTTGCAGCCATCGATGAGAGGCCGGCAAAAATCACATATGA
TAACAAGTGGAATGAGATGGACGAGAATGCTAGTGCAAACATTCATCTGCCATTGGCAGATAATGTCTTGTCAAGCATTGAGGAGAAGAAAGTTGCAAAGGAGATTTAG
Protein sequenceShow/hide protein sequence
MYSLLKEFCPVRDLVRRSKVYLKSNFEAATVVTSPPSTSSTSCHPTSCARTQLLITVTAVRLAHSSFLAVKIVLLVFGHCSACRFCPPSEAAICSLRSWLEVMAAKFEIE
KFNGINFSLWKLKMKAFLREDNCLAAIDERPAKITYDNKWNEMDENASANIHLPLADNVLSSIEEKKVAKEI