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Clc09G17500 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G17500
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr09:28722562..28724004
RNA-Seq ExpressionClc09G17500
SyntenyClc09G17500
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34114.1 retrotransposon protein [Cucumis melo subsp. melo]1.1e-4435.23Show/hide
Query:  SIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNVSAV
        +I  L  T  VD+EEMVA+FLHILAHDVK+RV++R F RS E +SR+FN +L AV++ H  LLKKP+ + N CTD+RW+WF+NCLGALD +YIKVNV A 
Subjt:  SIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNVSAV

Query:  DQPRYRMRKGEIATNILAVCDL-GEFVFAF-------------------PGNMRI-----------------------GAMFDAPDY---ENSASV----
        D+ RYR RKGE+ATN+L VCD  G+FV+                     P  +++                       G  +   ++   EN+ S     
Subjt:  DQPRYRMRKGEIATNILAVCDL-GEFVFAF-------------------PGNMRI-----------------------GAMFDAPDY---ENSASV----

Query:  -----------------------------------------------------------------EVDEDH-------IEFVESSNELTKFRNDLAVEIF
                                                                         EVD  H       I ++E+SNE +++R++LA E  
Subjt:  -----------------------------------------------------------------EVDEDH-------IEFVESSNELTKFRNDLAVEIF

Query:  IECIMVGNSKRTKHIWSKVEDAKLVEALLYLVEI-DWRSDNGMFQLGYLQHL
           IM  +S+  KH W+K E+A LVE L+ LV    WRSDNG F+ GYL  L
Subjt:  IECIMVGNSKRTKHIWSKVEDAKLVEALLYLVEI-DWRSDNGMFQLGYLQHL

KAA0036474.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-4534.83Show/hide
Query:  MVRSIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNV
        ++R++  L  T  VD+EEMVA+FLHI AHDVKNRV+QR F RS E VSR+FN +L AVL+ +  L+K+P  + + C D+RWK F+NCLGALD +YIKVNV
Subjt:  MVRSIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNV

Query:  SAVDQPRYRMRKGEIATNILAVCDL-GEFVFAFPG------NMRI------------------------------------GAMFDAPDYENSASVEV--
         A D+P +R RKGEIATN+L VCD  G+FV+   G      + RI                                    G  +   ++  +A+     
Subjt:  SAVDQPRYRMRKGEIATNILAVCDL-GEFVFAFPG------NMRI------------------------------------GAMFDAPDYENSASVEV--

Query:  ------------------------------------------DEDH-------------IEFVESSNELTKFRNDLAVEIFIECIMVGNSKRTKHIWSKV
                                                  DED              I+++E++NE +++R+DLA  +FI+  M  +++  +H+W++ 
Subjt:  ------------------------------------------DEDH-------------IEFVESSNELTKFRNDLAVEIFIECIMVGNSKRTKHIWSKV

Query:  EDAKLVEALLYLVEI-DWRSDNGMFQLGYLQHL
        E+  LVE L+ LV +  W+SDNG F+ GYL  L
Subjt:  EDAKLVEALLYLVEI-DWRSDNGMFQLGYLQHL

KAA0047074.1 retrotransposon protein [Cucumis melo var. makuwa]3.8e-4550.49Show/hide
Query:  MVRSIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNV
        ++R+I  L  T  VD+EEMVA+FLHILAHDVKNRV+QR F RSSE +SR+FN +L AV++ H  LLKKP+ + N CTD+RW+WF+NCL AL+ +YIKVNV
Subjt:  MVRSIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNV

Query:  SAVDQPRYRMRKGEIATNILAVCDL-GEFVFAFPG------NMRIGAMFDAPDYENSASV-------EVDEDH-------IEFVESSNELTKFRNDLAVE
         A D+ RYR RKGE+ATN+  +CD  G+FV+   G      + RI  + DA    N   V       EVD  H       I ++E+SNE +++R+DLA E
Subjt:  SAVDQPRYRMRKGEIATNILAVCDL-GEFVFAFPG------NMRIGAMFDAPDYENSASV-------EVDEDH-------IEFVESSNELTKFRNDLAVE

Query:  IFIE
        +F E
Subjt:  IFIE

KAA0061842.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-4460.27Show/hide
Query:  MVRSIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNV
        ++R+I  L  T+ VD+EEMVA+FLHILAHDVKNRV+QR F RSSE +SR+FN +L AV++ H  LLKKP+ + N CTD+RW+WF+NCLGALD +YIKVNV
Subjt:  MVRSIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNV

Query:  SAVDQPRYRMRKGEIATNILAVCDL-GEFVFAFPGNMRIGAMFDAP
         A D+ RYR RKGE+ATN+L VCD  G+FV+   G  RI      P
Subjt:  SAVDQPRYRMRKGEIATNILAVCDL-GEFVFAFPGNMRIGAMFDAP

KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-4435.59Show/hide
Query:  MVRSIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNV
        M+R+ G LE T+ VD+EEM+AIFLHI+AHDVKNRV +R+F+RS E VSR+FN    AVL+ H ILLK+P+ +  +C+ E+W+WFQ CLGALD ++IKVNV
Subjt:  MVRSIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNV

Query:  SAVDQPRYRMRKGEIATNILAVC-DLGEFVFAFPG-----------------------------------------------------------------
        S  D+PRYR RKG+I TN+L VC   GEF+F  PG                                                                 
Subjt:  SAVDQPRYRMRKGEIATNILAVC-DLGEFVFAFPG-----------------------------------------------------------------

Query:  ---NMRIG----------------------------------------------------AMFDAPDYENSASVEVDEDHIEFVESSNELTKFRNDLAVE
           NMR                                                      A F  P      S E++ ++I FVE++N  T++R++LA +
Subjt:  ---NMRIG----------------------------------------------------AMFDAPDYENSASVEVDEDHIEFVESSNELTKFRNDLAVE

Query:  IFIEC--IMVGNSKRTKHIWSKVEDAKLVEALLYLVEI-DWRSDNGMFQLGYLQ
        +F +   +   NSK TKH W+ +ED  LVE LL LVE   WR+DNG F+L YL+
Subjt:  IFIEC--IMVGNSKRTKHIWSKVEDAKLVEALLYLVEI-DWRSDNGMFQLGYLQ

TrEMBL top hitse value%identityAlignment
A0A5A7SYW1 Retrotransposon protein8.4e-4634.83Show/hide
Query:  MVRSIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNV
        ++R++  L  T  VD+EEMVA+FLHI AHDVKNRV+QR F RS E VSR+FN +L AVL+ +  L+K+P  + + C D+RWK F+NCLGALD +YIKVNV
Subjt:  MVRSIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNV

Query:  SAVDQPRYRMRKGEIATNILAVCDL-GEFVFAFPG------NMRI------------------------------------GAMFDAPDYENSASVEV--
         A D+P +R RKGEIATN+L VCD  G+FV+   G      + RI                                    G  +   ++  +A+     
Subjt:  SAVDQPRYRMRKGEIATNILAVCDL-GEFVFAFPG------NMRI------------------------------------GAMFDAPDYENSASVEV--

Query:  ------------------------------------------DEDH-------------IEFVESSNELTKFRNDLAVEIFIECIMVGNSKRTKHIWSKV
                                                  DED              I+++E++NE +++R+DLA  +FI+  M  +++  +H+W++ 
Subjt:  ------------------------------------------DEDH-------------IEFVESSNELTKFRNDLAVEIFIECIMVGNSKRTKHIWSKV

Query:  EDAKLVEALLYLVEI-DWRSDNGMFQLGYLQHL
        E+  LVE L+ LV +  W+SDNG F+ GYL  L
Subjt:  EDAKLVEALLYLVEI-DWRSDNGMFQLGYLQHL

A0A5A7TF70 Putative nuclease HARBI11.6e-4441.92Show/hide
Query:  MVRSIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNV
        M+R  G LE T+ VD+EEMVAIFLHI+AHD+KNRV +R+F+RS E +SR+FNA+L  VL+ H ILLK+P+ + ++C+ E+W+WFQN LGALD ++IKVNV
Subjt:  MVRSIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNV

Query:  SAVDQPRYRMRKGEIATNILAVCDL-GEFVFAFPG------NMRIGAMFDAPDYENSASVEVDEDH-------------------IEFVESSNELTKFRN
        S  D+ RYR RKG+I  N+L VC   GEF+F   G      ++R+  + DA        V   + +                   I    + N + +   
Subjt:  SAVDQPRYRMRKGEIATNILAVCDL-GEFVFAFPG------NMRIGAMFDAPDYENSASVEVDEDH-------------------IEFVESSNELTKFRN

Query:  DLAVEIFIECIMVGNSKRTKHIWSKVEDAKLVEALLYLVEI-DWRSDNGMFQLGYLQHLE
         L    F E  +    +  KH W+ +E+  LVE LL LVE   WR DNG F+ GYL  ++
Subjt:  DLAVEIFIECIMVGNSKRTKHIWSKVEDAKLVEALLYLVEI-DWRSDNGMFQLGYLQHLE

A0A5A7VG45 Retrotransposon protein7.1e-4535.59Show/hide
Query:  MVRSIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNV
        M+R+ G LE T+ VD+EEM+AIFLHI+AHDVKNRV +R+F+RS E VSR+FN    AVL+ H ILLK+P+ +  +C+ E+W+WFQ CLGALD ++IKVNV
Subjt:  MVRSIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNV

Query:  SAVDQPRYRMRKGEIATNILAVC-DLGEFVFAFPG-----------------------------------------------------------------
        S  D+PRYR RKG+I TN+L VC   GEF+F  PG                                                                 
Subjt:  SAVDQPRYRMRKGEIATNILAVC-DLGEFVFAFPG-----------------------------------------------------------------

Query:  ---NMRIG----------------------------------------------------AMFDAPDYENSASVEVDEDHIEFVESSNELTKFRNDLAVE
           NMR                                                      A F  P      S E++ ++I FVE++N  T++R++LA +
Subjt:  ---NMRIG----------------------------------------------------AMFDAPDYENSASVEVDEDHIEFVESSNELTKFRNDLAVE

Query:  IFIEC--IMVGNSKRTKHIWSKVEDAKLVEALLYLVEI-DWRSDNGMFQLGYLQ
        +F +   +   NSK TKH W+ +ED  LVE LL LVE   WR+DNG F+L YL+
Subjt:  IFIEC--IMVGNSKRTKHIWSKVEDAKLVEALLYLVEI-DWRSDNGMFQLGYLQ

A0A5D3BZB1 Retrotransposon protein1.9e-4550.49Show/hide
Query:  MVRSIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNV
        ++R+I  L  T  VD+EEMVA+FLHILAHDVKNRV+QR F RSSE +SR+FN +L AV++ H  LLKKP+ + N CTD+RW+WF+NCL AL+ +YIKVNV
Subjt:  MVRSIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNV

Query:  SAVDQPRYRMRKGEIATNILAVCDL-GEFVFAFPG------NMRIGAMFDAPDYENSASV-------EVDEDH-------IEFVESSNELTKFRNDLAVE
         A D+ RYR RKGE+ATN+  +CD  G+FV+   G      + RI  + DA    N   V       EVD  H       I ++E+SNE +++R+DLA E
Subjt:  SAVDQPRYRMRKGEIATNILAVCDL-GEFVFAFPG------NMRIGAMFDAPDYENSASV-------EVDEDH-------IEFVESSNELTKFRNDLAVE

Query:  IFIE
        +F E
Subjt:  IFIE

E5GCB5 Retrotransposon protein5.4e-4535.23Show/hide
Query:  SIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNVSAV
        +I  L  T  VD+EEMVA+FLHILAHDVK+RV++R F RS E +SR+FN +L AV++ H  LLKKP+ + N CTD+RW+WF+NCLGALD +YIKVNV A 
Subjt:  SIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNVSAV

Query:  DQPRYRMRKGEIATNILAVCDL-GEFVFAF-------------------PGNMRI-----------------------GAMFDAPDY---ENSASV----
        D+ RYR RKGE+ATN+L VCD  G+FV+                     P  +++                       G  +   ++   EN+ S     
Subjt:  DQPRYRMRKGEIATNILAVCDL-GEFVFAF-------------------PGNMRI-----------------------GAMFDAPDY---ENSASV----

Query:  -----------------------------------------------------------------EVDEDH-------IEFVESSNELTKFRNDLAVEIF
                                                                         EVD  H       I ++E+SNE +++R++LA E  
Subjt:  -----------------------------------------------------------------EVDEDH-------IEFVESSNELTKFRNDLAVEIF

Query:  IECIMVGNSKRTKHIWSKVEDAKLVEALLYLVEI-DWRSDNGMFQLGYLQHL
           IM  +S+  KH W+K E+A LVE L+ LV    WRSDNG F+ GYL  L
Subjt:  IECIMVGNSKRTKHIWSKVEDAKLVEALLYLVEI-DWRSDNGMFQLGYLQHL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein3.5e-1233.56Show/hide
Query:  LEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKA--VLQFHII-------LLKKPEQIANTCTDER-WKWFQNCLGALDDSYIK
        L+PT  + IEE VA+FL I  H+   R V   F R+ E V R F  +L A  +L    I       L + PE++     D+R W +F   +GA+D +++ 
Subjt:  LEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKA--VLQFHII-------LLKKPEQIANTCTDER-WKWFQNCLGALDDSYIK

Query:  VNVSAVDQPRYRMRKGEIATNILAVCDLGEFVFAFPGNMRIGAMFD
        V V    Q  Y  R    + NI+A+CDL + +F +  N   G+ +D
Subjt:  VNVSAVDQPRYRMRKGEIATNILAVCDLGEFVFAFPGNMRIGAMFD

AT5G28950.1 unknown protein5.8e-0740Show/hide
Query:  WKWFQNCLGALDDSYIKVNVSAVDQPRYRMRKGEIATNILAVCDLG-EFVFAFPG
        + +F++C+GA+DD++I   VS    P +R RKG+I+ N+LA C+   EF++   G
Subjt:  WKWFQNCLGALDDSYIKVNVSAVDQPRYRMRKGEIATNILAVCDLG-EFVFAFPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTACGGTCGATTGGTTGTTTGGAACCAACAAGATGTGTGGACATCGAAGAGATGGTAGCGATATTCCTACACATTCTTGCGCATGATGTCAAGAATCGAGTGGTACA
GAGGAACTTTTCAAGATCCAGCGAGATGGTTTCGAGATATTTCAACGCAATTCTTAAGGCAGTTTTACAATTTCACATTATTTTGTTGAAAAAACCGGAACAAATCGCAA
ATACATGCACCGATGAAAGGTGGAAGTGGTTTCAGAATTGTTTAGGTGCGTTAGACGACTCATACATTAAAGTGAATGTTAGTGCCGTCGATCAACCTCGATATAGGATG
AGGAAGGGAGAAATTGCCACAAACATTCTTGCAGTGTGTGATCTGGGGGAGTTCGTCTTTGCTTTCCCAGGGAACATGAGAATCGGTGCAATGTTTGACGCACCCGATTA
CGAGAATTCTGCATCAGTTGAAGTTGATGAGGATCATATTGAATTTGTTGAATCCTCGAACGAATTGACAAAGTTCAGGAATGACTTGGCAGTCGAAATATTTATTGAAT
GTATAATGGTAGGTAATAGTAAGAGGACTAAGCACATATGGTCTAAGGTGGAAGACGCTAAGTTGGTGGAAGCCCTACTCTATTTGGTAGAGATTGATTGGAGGTCGGAC
AATGGGATGTTTCAACTCGGATACTTGCAGCACCTAGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTACGGTCGATTGGTTGTTTGGAACCAACAAGATGTGTGGACATCGAAGAGATGGTAGCGATATTCCTACACATTCTTGCGCATGATGTCAAGAATCGAGTGGTACA
GAGGAACTTTTCAAGATCCAGCGAGATGGTTTCGAGATATTTCAACGCAATTCTTAAGGCAGTTTTACAATTTCACATTATTTTGTTGAAAAAACCGGAACAAATCGCAA
ATACATGCACCGATGAAAGGTGGAAGTGGTTTCAGAATTGTTTAGGTGCGTTAGACGACTCATACATTAAAGTGAATGTTAGTGCCGTCGATCAACCTCGATATAGGATG
AGGAAGGGAGAAATTGCCACAAACATTCTTGCAGTGTGTGATCTGGGGGAGTTCGTCTTTGCTTTCCCAGGGAACATGAGAATCGGTGCAATGTTTGACGCACCCGATTA
CGAGAATTCTGCATCAGTTGAAGTTGATGAGGATCATATTGAATTTGTTGAATCCTCGAACGAATTGACAAAGTTCAGGAATGACTTGGCAGTCGAAATATTTATTGAAT
GTATAATGGTAGGTAATAGTAAGAGGACTAAGCACATATGGTCTAAGGTGGAAGACGCTAAGTTGGTGGAAGCCCTACTCTATTTGGTAGAGATTGATTGGAGGTCGGAC
AATGGGATGTTTCAACTCGGATACTTGCAGCACCTAGAGTGA
Protein sequenceShow/hide protein sequence
MVRSIGCLEPTRCVDIEEMVAIFLHILAHDVKNRVVQRNFSRSSEMVSRYFNAILKAVLQFHIILLKKPEQIANTCTDERWKWFQNCLGALDDSYIKVNVSAVDQPRYRM
RKGEIATNILAVCDLGEFVFAFPGNMRIGAMFDAPDYENSASVEVDEDHIEFVESSNELTKFRNDLAVEIFIECIMVGNSKRTKHIWSKVEDAKLVEALLYLVEIDWRSD
NGMFQLGYLQHLE