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Clc09G17510 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G17510
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr09:28724082..28724937
RNA-Seq ExpressionClc09G17510
SyntenyClc09G17510
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038877407.1 uncharacterized protein LOC120069696 [Benincasa hispida]4.5e-6762.5Show/hide
Query:  MLGQLRFGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLGSQDCHTVEFRQTDSPLNP
        ML Q  F WNEEFKCVQV+REIF+LWVRSHP+AKGMWNK F HYDDLST                                   DCHT E  Q +S LN 
Subjt:  MLGQLRFGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLGSQDCHTVEFRQTDSPLNP

Query:  NGMDEETAKQSTSRATL-AESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQK
        + +DEE  +QST R ++  ESSRGSKRKR SFQ EMID M ST+EM +THM ++ASWQK+KYEL FG QKEVVNAIY+IDG+ ED QVTLID++VTDIQK
Subjt:  NGMDEETAKQSTSRATL-AESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQK

Query:  TDCFLAVPEHARKRYCLRLLGRDM
        TDCFLAVPEHA KRYCLRLLGR+M
Subjt:  TDCFLAVPEHARKRYCLRLLGRDM

XP_038887234.1 uncharacterized protein LOC120077425 [Benincasa hispida]2.3e-7165.18Show/hide
Query:  MLGQLRFGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLGSQDCHTVEFRQTDSPLNP
        ML Q  F WNEEFKCVQV+REIFDLWVRSHP+AKGMW K F HYDDLS +FGKDR                             DCHT E RQT+SPLN 
Subjt:  MLGQLRFGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLGSQDCHTVEFRQTDSPLNP

Query:  NGMDEETAKQSTSRATL-AESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQK
        + +DEE A+QST RA++  ESSRGSKRKR SFQ EMID + ST+EMQ+THM ++ASWQ EKYEL     KEVVNAIY+ID + E+DQVTLID++VTDIQK
Subjt:  NGMDEETAKQSTSRATL-AESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQK

Query:  TDCFLAVPEHARKRYCLRLLGRDM
        TDCFLAVPEHARKRYCLRLLGR+M
Subjt:  TDCFLAVPEHARKRYCLRLLGRDM

XP_038895773.1 uncharacterized protein LOC120083935 [Benincasa hispida]2.0e-6760.54Show/hide
Query:  MLGQLRFGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLGSQDCHTVEFRQTDSPLNP
        ML Q  F WNEEFKCVQV+REIFD WVRSHP+AKGMWNK F HYDDLST+FGK + VGQSSEDP++M +NAFREFED IRLGSQDCHT E          
Subjt:  MLGQLRFGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLGSQDCHTVEFRQTDSPLNP

Query:  NGMDEETAKQSTSRATLAESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQKT
                                                      +THM ++ASWQKEKYEL FG +KEVVNAIY+IDG+ EDDQVTLID+LVTDIQKT
Subjt:  NGMDEETAKQSTSRATLAESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQKT

Query:  DCFLAVPEHARKRYCLRLLGRDM
        +CFLAVPEHARKRYCLRLLGR+M
Subjt:  DCFLAVPEHARKRYCLRLLGRDM

XP_038896380.1 uncharacterized protein LOC120084641 [Benincasa hispida]1.2e-7568.3Show/hide
Query:  MLGQLRFGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLGSQDCHTVEFRQTDSPLNP
        ML Q  FGWNEEFKCVQV++EIFDLWVRSH +AKGMWNKSF HYDDLST+FGKDR                             +CHT E  Q +SPLN 
Subjt:  MLGQLRFGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLGSQDCHTVEFRQTDSPLNP

Query:  NGMDEETAKQSTSRAT-LAESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQK
        + +DEE A+QST RA+ LAESSRGSKRKR SFQAEMID M ST+EMQ+THM ++ASWQKEKYEL FG +KEVVNAIYSIDG+ EDDQVT ID+LVTDIQK
Subjt:  NGMDEETAKQSTSRAT-LAESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQK

Query:  TDCFLAVPEHARKRYCLRLLGRDM
        TDCFLAVPEHARKRYCL LL R+M
Subjt:  TDCFLAVPEHARKRYCLRLLGRDM

XP_038899910.1 uncharacterized protein LOC120087100 [Benincasa hispida]1.1e-7073.94Show/hide
Query:  MLGQLRFGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLGSQDCHTVEFRQTDSPLNP
        ML Q  FGWNEEFKCVQV++EIF+   RSHP+AKGMWNKSF HYDDLST+FGKDR VGQSSEDP++MA NAFREFED IRLGSQDC T E RQT+SPLN 
Subjt:  MLGQLRFGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLGSQDCHTVEFRQTDSPLNP

Query:  NGMDEETAKQSTSRATL-AESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQV
        + +DEE A+QST RA++  E+S+GSKRKR SFQAEMID M ST+EMQ+THM ++ASWQKEKYEL F H KEVVNAIYSIDG+ EDD++
Subjt:  NGMDEETAKQSTSRATL-AESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQV

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859537.5e-2836.45Show/hide
Query:  FGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLG-SQDCHTVEFRQTDSPLNPNGMDE
        FGWNEEF+C+  +R++FD W++SHP+AKG+ +KSF +YDDLS +FGKDR  G  SE    + SN    F D I LG S D            ++P+ M  
Subjt:  FGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLG-SQDCHTVEFRQTDSPLNPNGMDE

Query:  ETAKQSTSRATLAESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQKTDCFLA
          A Q++ R      S  SKRKR S + E ++ + S +E  N  +  +A W KEK  +    + +VV  +  I  +   D+  L+ IL   ++  + FL+
Subjt:  ETAKQSTSRATLAESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQKTDCFLA

Query:  VPEHARKRYCLRLL
        +P   +  YC  LL
Subjt:  VPEHARKRYCLRLL

A0A5A7U0H7 Retrotransposon protein7.5e-2836.45Show/hide
Query:  FGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLG-SQDCHTVEFRQTDSPLNPNGMDE
        FGWNEEF+C+  +R++FD W++SHP+AKG+ +KSF +YDDLS +FGKDR  G  SE    + SN    F D I LG S D            ++P+ M  
Subjt:  FGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLG-SQDCHTVEFRQTDSPLNPNGMDE

Query:  ETAKQSTSRATLAESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQKTDCFLA
          A Q++ R      S  SKRKR S + E ++ + S +E  N  +  +A W KEK  +    + +VV  +  I  +   D+  L+ IL   ++  + FL+
Subjt:  ETAKQSTSRATLAESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQKTDCFLA

Query:  VPEHARKRYCLRLL
        +P   +  YC  LL
Subjt:  VPEHARKRYCLRLL

A0A5A7VGQ0 Retrotransposon protein1.6e-2232.52Show/hide
Query:  RFGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLGSQDCHTVEFRQTDSPLNPNGMD-
        RFGWNEE KC++ ++ +FD WV+ HP+A+G+ NKSF ++ DL  +FG+DR  G   + P  M     R+ E       +D   +     D P NP+G++ 
Subjt:  RFGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLGSQDCHTVEFRQTDSPLNPNGMD-

Query:  ---EETAKQSTSRATLAESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQKTD
           E+ +   TS A    SS+ SK++R S+  +++D   +++   +  + K+A+WQ+EK E+     K +   + +I GM  DD + +++ L+ D     
Subjt:  ---EETAKQSTSRATLAESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQKTD

Query:  CFLAVP
         FL  P
Subjt:  CFLAVP

A0A5D3CKC1 Retrotransposon protein1.2e-2232.52Show/hide
Query:  RFGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLGSQDCHTVEFRQTDSPLNPNGMD-
        RFGWNEE KC++ ++ +FD WV+ HP+A+G+ NKSF ++ DL  +FG+DR  G   + P  M     R+ E       +D   +     D P NP+G++ 
Subjt:  RFGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLGSQDCHTVEFRQTDSPLNPNGMD-

Query:  ---EETAKQSTSRATLAESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQKTD
           E+ +   TS A    SSR SK++R S+  +++D   +++   +  + K+ +WQ+EK E+     K +   + +I GM  DD + +++ L+ D     
Subjt:  ---EETAKQSTSRATLAESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQKTD

Query:  CFLAVP
         FL  P
Subjt:  CFLAVP

A0A6J1DW73 uncharacterized protein LOC1110250186.4e-3537.61Show/hide
Query:  FGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLGSQDCHTVEFRQTDSPL---NPNGM
        FGWN++ KC++ ++E+FD WV+SHP+AKG+ NK   HYDDL+  FGKDR  G + + P  MAS+A     +     +QD     F   D P+     + +
Subjt:  FGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLGSQDCHTVEFRQTDSPL---NPNGM

Query:  DEETAKQSTSRATLAESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQKTDCF
        +E+     TS+ T+  SS GSKRKR  + +EM+D + + + MQ  H++K+A+W  +K E     +K V + +  I  +  +D V L+ IL+T+++K+  F
Subjt:  DEETAKQSTSRATLAESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQKTDCF

Query:  LAVPEHARKRYCLRLLGR
        L VP   +K +C++LLG+
Subjt:  LAVPEHARKRYCLRLLGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGGTCAGTTGAGATTTGGCTGGAACGAGGAGTTCAAATGTGTCCAGGTCAAGAGGGAGATTTTCGATCTTTGGGTTCGGAGTCATCCTAGCGCGAAGGGGATGTG
GAACAAGTCGTTCTCCCATTACGATGACCTCTCTACCATCTTTGGGAAAGATAGAGTTGTAGGACAATCAAGTGAAGACCCGCACATGATGGCGAGTAATGCATTTAGAG
AGTTTGAAGATGGGATTCGACTTGGATCGCAGGACTGCCACACAGTTGAGTTTCGCCAAACAGATTCACCATTAAATCCGAATGGAATGGATGAAGAGACAGCAAAGCAA
TCTACAAGTAGAGCGACACTTGCCGAGTCATCTCGAGGAAGCAAGAGGAAGAGGCTATCATTCCAAGCTGAAATGATCGACAACATGATATCGACTATTGAGATGCAGAA
CACGCACATGGATAAAGTTGCATCGTGGCAAAAGGAGAAGTATGAGCTGGTGTTTGGTCATCAGAAGGAAGTAGTAAACGCTATATACAGTATTGACGGCATGACTGAGG
ATGACCAGGTGACCCTTATTGACATACTTGTCACAGACATTCAAAAGACAGATTGCTTCCTTGCAGTACCAGAACACGCACGGAAGAGGTATTGTCTTCGTCTACTAGGA
AGAGACATGTAA
mRNA sequenceShow/hide mRNA sequence
ATACAATGCAGCATCAGAGATGTTAGGTCAGTTGAGATTTGGCTGGAACGAGGAGTTCAAATGTGTCCAGGTCAAGAGGGAGATTTTCGATCTTTGGGTTCGGAGTCATC
CTAGCGCGAAGGGGATGTGGAACAAGTCGTTCTCCCATTACGATGACCTCTCTACCATCTTTGGGAAAGATAGAGTTGTAGGACAATCAAGTGAAGACCCGCACATGATG
GCGAGTAATGCATTTAGAGAGTTTGAAGATGGGATTCGACTTGGATCGCAGGACTGCCACACAGTTGAGTTTCGCCAAACAGATTCACCATTAAATCCGAATGGAATGGA
TGAAGAGACAGCAAAGCAATCTACAAGTAGAGCGACACTTGCCGAGTCATCTCGAGGAAGCAAGAGGAAGAGGCTATCATTCCAAGCTGAAATGATCGACAACATGATAT
CGACTATTGAGATGCAGAACACGCACATGGATAAAGTTGCATCGTGGCAAAAGGAGAAGTATGAGCTGGTGTTTGGTCATCAGAAGGAAGTAGTAAACGCTATATACAGT
ATTGACGGCATGACTGAGGATGACCAGGTGACCCTTATTGACATACTTGTCACAGACATTCAAAAGACAGATTGCTTCCTTGCAGTACCAGAACACGCACGGAAGAGGTA
TTGTCTTCGTCTACTAGGAAGAGACATGTAAACTGCCCACGGATATTTAAACTAGTACCTATGTATTTTGTTATATTTCTTTTGGATAACGACAAATGGACAATGAGATG
TGAAGTCG
Protein sequenceShow/hide protein sequence
MLGQLRFGWNEEFKCVQVKREIFDLWVRSHPSAKGMWNKSFSHYDDLSTIFGKDRVVGQSSEDPHMMASNAFREFEDGIRLGSQDCHTVEFRQTDSPLNPNGMDEETAKQ
STSRATLAESSRGSKRKRLSFQAEMIDNMISTIEMQNTHMDKVASWQKEKYELVFGHQKEVVNAIYSIDGMTEDDQVTLIDILVTDIQKTDCFLAVPEHARKRYCLRLLG
RDM