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Clc09G17650 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G17650
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionextensin-like
Genome locationClcChr09:29096687..29097367
RNA-Seq ExpressionClc09G17650
SyntenyClc09G17650
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576849.1 hypothetical protein SDJN03_24423, partial [Cucurbita argyrosperma subsp. sororia]1.2e-0539.67Show/hide
Query:  MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP------PPPTPS---HETKPTPLSSYPAPAP-------SPTSVPPAAHH
        M   AV N + AA LL SAAA+SP+PSPAPS       SPPW+WTP T+ P       PP+PS    E  P P S  P   P       SP ++PPA   
Subjt:  MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP------PPPTPS---HETKPTPLSSYPAPAP-------SPTSVPPAAHH

Query:  --HTPSARPVSPPLP----------QSPSPSALPVPS-PSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL
          H PS      P P          ++P  SA PV S P+P+       PS  P   KA +    N+F++  SVA G MAAAL+
Subjt:  --HTPSARPVSPPLP----------QSPSPSALPVPS-PSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL

KAG7014869.1 hypothetical protein SDJN02_22499, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-0539.67Show/hide
Query:  MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP------PPPTPS---HETKPTPLSSYPAPAP-------SPTSVPPAAHH
        M   AV N + AA LL SAAA+SP+PSPAPS       SPPW+WTP T+ P       PP+PS    E  P P S  P   P       SP ++PPA   
Subjt:  MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP------PPPTPS---HETKPTPLSSYPAPAP-------SPTSVPPAAHH

Query:  --HTPSARPVSPPLP----------QSPSPSALPVPS-PSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL
          H PS      P P          ++P  SA PV S P+P+       PS  P   KA +    N+F++  SVA G MAAAL+
Subjt:  --HTPSARPVSPPLP----------QSPSPSALPVPS-PSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL

XP_011659717.1 vegetative cell wall protein gp1 [Cucumis sativus]4.0e-3064.74Show/hide
Query:  MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP-PPPTPSHETKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQS
        MPHS + NALLAAALLFSAAA SP PSP+P  TPPAS SPPWRW PITKPP  PPTPSHET+P+       P PSPTSVPP AHH  P            
Subjt:  MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP-PPPTPSHETKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQS

Query:  PSPSALPVPSPSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL
          P+A P  SPSPS +WIA PPSE  +PSKAKSD F N FS+V SVAIGAMAAA L
Subjt:  PSPSALPVPSPSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL

XP_022141995.1 extensin-like [Momordica charantia]8.9e-2259.6Show/hide
Query:  LAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPT---PSHETKPTPLSSYPAPAPSPTS--VPPAAHHHTPSARPVS-PPLPQSPSPSA
        +AAALL SAAA    P PAPS +P A+PSPPWRWTP  KPP PPT   P+   +PTP SS PAP+PSPT+  VPPA     P+A PVS PP  QSP+P  
Subjt:  LAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPT---PSHETKPTPLSSYPAPAPSPTS--VPPAAHHHTPSARPVS-PPLPQSPSPSA

Query:  LPVPSPSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL
         P P+ +P+ SWIAGPP++  APSK KS+A  N+FS+V SV IGAMAAA L
Subjt:  LPVPSPSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL

XP_038887113.1 anther-specific proline-rich protein APG-like [Benincasa hispida]3.1e-4375Show/hide
Query:  MPHSAVFNALLAAALLFS-AAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPTPSHETKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQS
        MPHSA+ NALLAAALLFS AAA +P PSPAP  TPPASPSPPWRWTPITKPPP  TPSHE+KPTP  S P P PSPT V P  HHH P+ RPVS PL +S
Subjt:  MPHSAVFNALLAAALLFS-AAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPTPSHETKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQS

Query:  PSPSALPVPSPSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL
        PS      PSPSPS SWIA PP E PAPSKAKSDAFNN+FSVV SVAI AMAAALL
Subjt:  PSPSALPVPSPSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL

TrEMBL top hitse value%identityAlignment
A0A0A0K238 Uncharacterized protein1.9e-3064.74Show/hide
Query:  MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP-PPPTPSHETKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQS
        MPHS + NALLAAALLFSAAA SP PSP+P  TPPAS SPPWRW PITKPP  PPTPSHET+P+       P PSPTSVPP AHH  P            
Subjt:  MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP-PPPTPSHETKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQS

Query:  PSPSALPVPSPSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL
          P+A P  SPSPS +WIA PPSE  +PSKAKSD F N FS+V SVAIGAMAAA L
Subjt:  PSPSALPVPSPSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL

A0A2K3CSD7 Uncharacterized protein1.6e-0544.36Show/hide
Query:  MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPTPSHETKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQSP
        +PH   +  ++ AALL +AAA +P PSPAP  +P  SPSP  + +P   P P P+PS    P+P S  P+P+PSP+  P  +   +PS  P   P P SP
Subjt:  MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPTPSHETKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQSP

Query:  SPSALPVPSPSPSSSWIAGP-PSEVPAPSKAKS
        SPS  P PSP PS S    P PS  P+PS + S
Subjt:  SPSALPVPSPSPSSSWIAGP-PSEVPAPSKAKS

A0A5A7V3Q7 Classical arabinogalactan protein 41.1e-0437.24Show/hide
Query:  MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP---------------------PPPTPSHETKPTPLSSYPAPAP------
        M  S + N L  A LL SAAA+SP PSPAPS     + SP W+WTP  +PP                     PP TP  E  P P S  P   P      
Subjt:  MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP---------------------PPPTPSHETKPTPLSSYPAPAP------

Query:  -SPTSVPPA--AHHHTPSARPVSPPLPQ----SPSPSALPVPS-------PSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL
         SPT+ PPA  +  H PS      P P     SP+P+  P  S       PSP+       PSE PAPSK  + A  N+F++  S+A G M AA +
Subjt:  -SPTSVPPA--AHHHTPSARPVSPPLPQ----SPSPSALPVPS-------PSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL

A0A6J1CJN4 extensin-like4.3e-2259.6Show/hide
Query:  LAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPT---PSHETKPTPLSSYPAPAPSPTS--VPPAAHHHTPSARPVS-PPLPQSPSPSA
        +AAALL SAAA    P PAPS +P A+PSPPWRWTP  KPP PPT   P+   +PTP SS PAP+PSPT+  VPPA     P+A PVS PP  QSP+P  
Subjt:  LAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPT---PSHETKPTPLSSYPAPAPSPTS--VPPAAHHHTPSARPVS-PPLPQSPSPSA

Query:  LPVPSPSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL
         P P+ +P+ SWIAGPP++  APSK KS+A  N+FS+V SV IGAMAAA L
Subjt:  LPVPSPSPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL

A0A6J1E3R0 extensin-like9.6e-0638.04Show/hide
Query:  MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP------PPPTPS---HETKPTPLSSYPAPAP-------SPTSVPPAAHH
        M   AV N + AA LL SA+A+SP+PSPAPS       SPPW+WTP T  P       PP+PS    E  P P S  P   P       SP ++PPA   
Subjt:  MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPP------PPPTPS---HETKPTPLSSYPAPAP-------SPTSVPPAAHH

Query:  --HTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIAGPPS-----EVPAPS------KAKSDAFNNKFSVVRSVAIGAMAAALL
          H PS      P P     S+ P  +P  S++ ++ PP+     E P PS      KA++    N+F++  +VA G MAAAL+
Subjt:  --HTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIAGPPS-----EVPAPS------KAKSDAFNNKFSVVRSVAIGAMAAALL

SwissProt top hitse value%identityAlignment
O10341 Uncharacterized 29.3 kDa protein2.7e-0548.11Show/hide
Query:  SPVPSPAPSRTPPASPSPPWRWTPITKPPPPPTPSHETKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIAGPPS
        SP PSP P+ +P  SP+P    TP   P P PTPS    PTP  S P P PSPT  P  +   TPS  P   P P SP+PS  P PSP+PS +    PPS
Subjt:  SPVPSPAPSRTPPASPSPPWRWTPITKPPPPPTPSHETKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIAGPPS

Query:  EVPAPS
          P PS
Subjt:  EVPAPS

Q9FPQ6 Vegetative cell wall protein gp12.1e-0545.3Show/hide
Query:  PVPSPAPSRTPPASPSPPWRWT---PITKPPPPPTPSHETKPTPLS-SYPAPA-PSPTSVPPAAHHHTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIA
        P P P PS  PP  P PP+      P + P PPP+P+  T PTP S S P+P  PSP  VPP+    +P+  P   P P +PSPS  P PSPSPS S   
Subjt:  PVPSPAPSRTPPASPSPPWRWT---PITKPPPPPTPSHETKPTPLS-SYPAPA-PSPTSVPPAAHHHTPSARPVSPPLPQSPSPSALPVPSPSPSSSWIA

Query:  GP---PSEVPAPSKAKS
         P   PS +P+PS   S
Subjt:  GP---PSEVPAPSKAKS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCACTCTGCCGTTTTCAACGCCCTTTTGGCGGCGGCGCTGCTCTTCTCCGCCGCCGCTCACTCGCCGGTTCCGTCACCGGCCCCGTCGCGCACTCCCCCGGCCTC
CCCTTCCCCTCCCTGGAGATGGACCCCCATCACCAAGCCTCCTCCACCCCCAACGCCGTCGCATGAGACCAAACCCACTCCACTGTCGTCGTATCCGGCACCGGCACCGT
CCCCTACTTCCGTTCCACCGGCAGCCCATCACCATACACCATCTGCTCGTCCAGTTTCCCCGCCGCTGCCACAGAGCCCTTCTCCGTCCGCGCTGCCAGTACCGTCTCCG
TCTCCATCTTCGTCGTGGATCGCCGGTCCGCCGTCGGAAGTACCGGCGCCGTCGAAAGCGAAGAGCGATGCCTTTAATAACAAATTCTCGGTGGTGAGATCGGTGGCTAT
TGGAGCCATGGCTGCTGCTCTGCTTTAA
mRNA sequenceShow/hide mRNA sequence
TGGTTGCTGTCTTAATACTTTACTCTCCATCTCCGGAAACCCTTCACGTACGTAAACAAACCAATCCCTTCTCAACCATGCCTCACTCTGCCGTTTTCAACGCCCTTTTG
GCGGCGGCGCTGCTCTTCTCCGCCGCCGCTCACTCGCCGGTTCCGTCACCGGCCCCGTCGCGCACTCCCCCGGCCTCCCCTTCCCCTCCCTGGAGATGGACCCCCATCAC
CAAGCCTCCTCCACCCCCAACGCCGTCGCATGAGACCAAACCCACTCCACTGTCGTCGTATCCGGCACCGGCACCGTCCCCTACTTCCGTTCCACCGGCAGCCCATCACC
ATACACCATCTGCTCGTCCAGTTTCCCCGCCGCTGCCACAGAGCCCTTCTCCGTCCGCGCTGCCAGTACCGTCTCCGTCTCCATCTTCGTCGTGGATCGCCGGTCCGCCG
TCGGAAGTACCGGCGCCGTCGAAAGCGAAGAGCGATGCCTTTAATAACAAATTCTCGGTGGTGAGATCGGTGGCTATTGGAGCCATGGCTGCTGCTCTGCTTTAATGGTT
TTATTAATTTACGATTTATTTTAATTTAGAGTTTCTTTGGTTTAAATATTATCAATGTTTGAATATGCAAACTGATCTTAGTTTTACATTATTTTGTTTTATCCATGAAA
TAGTTTCTCTATTTTAATTTC
Protein sequenceShow/hide protein sequence
MPHSAVFNALLAAALLFSAAAHSPVPSPAPSRTPPASPSPPWRWTPITKPPPPPTPSHETKPTPLSSYPAPAPSPTSVPPAAHHHTPSARPVSPPLPQSPSPSALPVPSP
SPSSSWIAGPPSEVPAPSKAKSDAFNNKFSVVRSVAIGAMAAALL