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Clc09G17760 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G17760
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
Genome locationClcChr09:29409390..29415857
RNA-Seq ExpressionClc09G17760
SyntenyClc09G17760
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033896.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-0434.45Show/hide
Query:  LSDEEKLIVTSTTFTRAALQWYYWTGGRQPFECWRDLK----EQFEAL-SAPLPRLAEEI-------------------HH---FGKCTPTAE-KESPMK
        L+DEEK+ V   +F   AL W+ W+  R+    W DLK    E F+A   APLP ++E +                   HH      C   A+  ES +K
Subjt:  LSDEEKLIVTSTTFTRAALQWYYWTGGRQPFECWRDLK----EQFEAL-SAPLPRLAEEI-------------------HH---FGKCTPTAE-KESPMK

Query:  HLLDAKLEARKAKGLCFRC
         L D++  AR  KGLCF C
Subjt:  HLLDAKLEARKAKGLCFRC

RVW46246.1 hypothetical protein CK203_086679 [Vitis vinifera]5.0e-0633.67Show/hide
Query:  LSDEEKLIVTSTTFTRAALQWYYWTGGRQPFECWRD-----LKEQFEALSAPLPRLAEE--IHHFGKCTPTAEKESPMKHLLDAKLEARKAKGLCFRC
        L + EKL+ T+ +    AL WY WTG R+ F   +       + +FE +  PL  +++E  +    + T    +E P+K L++++L+ARK K LCF+C
Subjt:  LSDEEKLIVTSTTFTRAALQWYYWTGGRQPFECWRD-----LKEQFEALSAPLPRLAEE--IHHFGKCTPTAEKESPMKHLLDAKLEARKAKGLCFRC

WP_217833383.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]7.2e-0575.61Show/hide
Query:  KQVEKGGEKLDGKIPINRTLKEKERLMTLKEELWREREEKR
        KQV K GEKLD K+PINRTL+EKERLMTLKEE WRE+  K+
Subjt:  KQVEKGGEKLDGKIPINRTLKEKERLMTLKEELWREREEKR

TrEMBL top hitse value%identityAlignment
A0A438EEK2 Uncharacterized protein2.4e-0633.67Show/hide
Query:  LSDEEKLIVTSTTFTRAALQWYYWTGGRQPFECWRD-----LKEQFEALSAPLPRLAEE--IHHFGKCTPTAEKESPMKHLLDAKLEARKAKGLCFRC
        L + EKL+ T+ +    AL WY WTG R+ F   +       + +FE +  PL  +++E  +    + T    +E P+K L++++L+ARK K LCF+C
Subjt:  LSDEEKLIVTSTTFTRAALQWYYWTGGRQPFECWRD-----LKEQFEALSAPLPRLAEE--IHHFGKCTPTAEKESPMKHLLDAKLEARKAKGLCFRC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTTCATGATGAATATGGTGGAAGCTGAGCTGGACTTGCCTTTAATCAATGATGTTGTAAAGGAGGGTGGACCTAGAGTTCCAAATCTAAGGAGGATTAGGCAATG
TAAATTCGAGTTGGCCGATGAAGAATTCACAAATGTGAAGTTTAGAGTGGCAGTCCAGGGAAAATCAAACAAGATGACACAGCGACAACTCTTAGAAAGTGTCGAGGAGT
CTGAGCGAACGTTGACGGAAGTAAGGGAAGATCTTCAGATGTTGCCTGAGATGGATAAGGCGGTGAAAGAGATTATGGACAACATGAATAGACTGTTGCAACAAATGGAG
GAGCAGAAGAAAGAATCAGTTAATAATCCAAAGAATGTGAGCCTCATGTTTCGTAACTTCGTAGAACAAAAGGAAATGTTAGAGGAGACATGGAGAGCAATATCTCCACT
ATCTAAAGGAATTTCTCGATTCTCATCCTCTGAGGAGAGAACCGACCATCCAAACACCCCGAAGAGGAAGGTGAGATGTCGATTGAAGGTGAGAACAGTAGTGGCAGAAC
ACAGAGGACAAAAACTAAAGATGGTTATGCTAATCATACTTTCTGATGAGGAGAAACTTATAGTGACTTCTACTACCTTTACGAGAGCTGCCCTGCAATGGTATTATTGG
ACCGGAGGCAGACAACCCTTTGAGTGTTGGCGAGACTTGAAGGAGCAGTTCGAGGCTTTGTCGGCCCCCCTACCTCGTCTGGCAGAGGAGATCCATCACTTTGGCAAGTG
CACCCCTACTGCTGAAAAGGAATCCCCTATGAAACATCTTTTGGATGCAAAGCTTGAGGCAAGGAAGGCGAAAGGCCTCTGCTTTCGTTGTGCAAGAATTTTACGCGTGA
CATGTGGCAAACAAGTGGAAAAAGGAGGGGAGAAGTTGGATGGCAAGATCCCTATAAATAGAACCTTGAAGGAAAAGGAGAGACTGATGACTCTAAAAGAAGAACTTTGG
AGAGAAAGGGAAGAAAAAAGGCAGAAAGGAGGAATCCTTGCGTCCGTAGTAGGAGTCTGCGACCAAGAGAGAAGGGTTGTGTCCGATCGAGCTGACAGAGAAATATGGAG
CCTTGCGTTTTTGAGATTAGAATGCTGCGTCCAAGAAGCTCGGGAAGAGGAAATAGAGGAAAGGAAGAGGAATTATTATTTGGCAAGTACAGGCACCCAAGGCTCAGGGA
CTTGGAGAAGGCCAAAGGGTAGCCGGTATATAGAAATGAGACCCCAATGCTCAGGGACTCGTAGAAGGCATTGTGGGCGGCTCGAACTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTTTCATGATGAATATGGTGGAAGCTGAGCTGGACTTGCCTTTAATCAATGATGTTGTAAAGGAGGGTGGACCTAGAGTTCCAAATCTAAGGAGGATTAGGCAATG
TAAATTCGAGTTGGCCGATGAAGAATTCACAAATGTGAAGTTTAGAGTGGCAGTCCAGGGAAAATCAAACAAGATGACACAGCGACAACTCTTAGAAAGTGTCGAGGAGT
CTGAGCGAACGTTGACGGAAGTAAGGGAAGATCTTCAGATGTTGCCTGAGATGGATAAGGCGGTGAAAGAGATTATGGACAACATGAATAGACTGTTGCAACAAATGGAG
GAGCAGAAGAAAGAATCAGTTAATAATCCAAAGAATGTGAGCCTCATGTTTCGTAACTTCGTAGAACAAAAGGAAATGTTAGAGGAGACATGGAGAGCAATATCTCCACT
ATCTAAAGGAATTTCTCGATTCTCATCCTCTGAGGAGAGAACCGACCATCCAAACACCCCGAAGAGGAAGGTGAGATGTCGATTGAAGGTGAGAACAGTAGTGGCAGAAC
ACAGAGGACAAAAACTAAAGATGGTTATGCTAATCATACTTTCTGATGAGGAGAAACTTATAGTGACTTCTACTACCTTTACGAGAGCTGCCCTGCAATGGTATTATTGG
ACCGGAGGCAGACAACCCTTTGAGTGTTGGCGAGACTTGAAGGAGCAGTTCGAGGCTTTGTCGGCCCCCCTACCTCGTCTGGCAGAGGAGATCCATCACTTTGGCAAGTG
CACCCCTACTGCTGAAAAGGAATCCCCTATGAAACATCTTTTGGATGCAAAGCTTGAGGCAAGGAAGGCGAAAGGCCTCTGCTTTCGTTGTGCAAGAATTTTACGCGTGA
CATGTGGCAAACAAGTGGAAAAAGGAGGGGAGAAGTTGGATGGCAAGATCCCTATAAATAGAACCTTGAAGGAAAAGGAGAGACTGATGACTCTAAAAGAAGAACTTTGG
AGAGAAAGGGAAGAAAAAAGGCAGAAAGGAGGAATCCTTGCGTCCGTAGTAGGAGTCTGCGACCAAGAGAGAAGGGTTGTGTCCGATCGAGCTGACAGAGAAATATGGAG
CCTTGCGTTTTTGAGATTAGAATGCTGCGTCCAAGAAGCTCGGGAAGAGGAAATAGAGGAAAGGAAGAGGAATTATTATTTGGCAAGTACAGGCACCCAAGGCTCAGGGA
CTTGGAGAAGGCCAAAGGGTAGCCGGTATATAGAAATGAGACCCCAATGCTCAGGGACTCGTAGAAGGCATTGTGGGCGGCTCGAACTCTAG
Protein sequenceShow/hide protein sequence
MCFMMNMVEAELDLPLINDVVKEGGPRVPNLRRIRQCKFELADEEFTNVKFRVAVQGKSNKMTQRQLLESVEESERTLTEVREDLQMLPEMDKAVKEIMDNMNRLLQQME
EQKKESVNNPKNVSLMFRNFVEQKEMLEETWRAISPLSKGISRFSSSEERTDHPNTPKRKVRCRLKVRTVVAEHRGQKLKMVMLIILSDEEKLIVTSTTFTRAALQWYYW
TGGRQPFECWRDLKEQFEALSAPLPRLAEEIHHFGKCTPTAEKESPMKHLLDAKLEARKAKGLCFRCARILRVTCGKQVEKGGEKLDGKIPINRTLKEKERLMTLKEELW
REREEKRQKGGILASVVGVCDQERRVVSDRADREIWSLAFLRLECCVQEAREEEIEERKRNYYLASTGTQGSGTWRRPKGSRYIEMRPQCSGTRRRHCGRLEL