CuGenDBv2

Gene ID	Clc09G18090
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Reverse transcriptase domain-containing protein
Genome location	ClcChr09:30132530..30132817
RNA-Seq Expression	Clc09G18090
Synteny	Clc09G18090
Gene Ontology terms	GO:0016310 - phosphorylation (biological process) GO:0044238 - primary metabolic process (biological process) GO:0071704 - organic substance metabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003724 - RNA helicase activity (molecular function) GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds (molecular function) GO:0004672 - protein kinase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0046077.1 putative DEAD-box ATP-dependent RNA helicase 29 [Cucumis melo var. makuwa]

6.0e-21

58.33

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Query:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW
        +P+ V+S +ER++RNFFWEGH G K++ LV+W+ V ++  DGG G+G  K+KN+ALLAKWGW+YM+EED+LW
Subjt:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW

KAA0055668.1 uncharacterized protein E6C27_scaffold181G00360 [Cucumis melo var. makuwa]

4.3e-19

62.5

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Query:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW
        MPE VIS  ER++RNFFWEG KG K++HLV W+ VTR+  DGG+     K++N+ALL KWGWRY++EEDSLW
Subjt:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW

TYK09445.1 putative DEAD-box ATP-dependent RNA helicase 29 [Cucumis melo var. makuwa]

6.0e-21

58.33

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Query:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW
        +P+ V+S +ER++RNFFWEGH G K++ LV+W+ V ++  DGG G+G  K+KN+ALLAKWGW+YM+EED+LW
Subjt:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW

TYK09922.1 uncharacterized protein E5676_scaffold16G00380 [Cucumis melo var. makuwa]

1.9e-19

63.89

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Query:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW
        MPE VIS  ER++RNFFWEG KG K++HLV W+ VTR+  DG    GG K++N+ALL KWGWRY++EEDSLW
Subjt:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW

XP_038880332.1 uncharacterized protein LOC120071973 [Benincasa hispida]

1.3e-23

63.89

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Query:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW
        +PEKV+ I+ER M+NFFWEGHKGGK++HLV+W+LVT+ Q DGG G+GGL+++N+A LAKWGWR +  E++LW
Subjt:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TW08 Putative DEAD-box ATP-dependent RNA helicase 29

2.9e-21

58.33

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Query:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW
        +P+ V+S +ER++RNFFWEGH G K++ LV+W+ V ++  DGG G+G  K+KN+ALLAKWGW+YM+EED+LW
Subjt:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW

A0A5A7UKS5 Uncharacterized protein

2.1e-19

62.5

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Query:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW
        MPE VIS  ER++RNFFWEG KG K++HLV W+ VTR+  DGG+     K++N+ALL KWGWRY++EEDSLW
Subjt:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW

A0A5D3CD49 RNA helicase

2.9e-21

58.33

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Query:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW
        +P+ V+S +ER++RNFFWEGH G K++ LV+W+ V ++  DGG G+G  K+KN+ALLAKWGW+YM+EED+LW
Subjt:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW

A0A5D3CF41 Uncharacterized protein

9.3e-20

63.89

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Query:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW
        MPE VIS  ER++RNFFWEG KG K++HLV W+ VTR+  DG    GG K++N+ALL KWGWRY++EEDSLW
Subjt:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW

A0A5D3CSP2 Uncharacterized protein

3.9e-18

54.17

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Query:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW
        +PE V   +E+++RNFFWEG+ G K++H V W  VT +  DG  G+GG+++K++ALLAKWGWRYMKE  +LW
Subjt:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

2.2e-10

36.11

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Query:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW
        +P+ +++ ++++ R F W      K  HLV+W  V   + +GG G+   KS N AL++K GWR ++E++SLW
Subjt:  MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLW

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCAGAAAAGGTGATTTCAATCATTGAACGTGTGATGAGGAACTTCTTTTGGGAAGGCCACAAAGGGGGGAAGTTGAGTCATCTAGTTAGATGGGACTTGGTGACTCG
AAATCAATTCGACGGTGGCTTTGGAATTGGTGGTTTGAAATCAAAGAATATTGCCCTTTTAGCCAAATGGGGCTGGCGGTATATGAAGGAAGAGGACTCCCTTTGGGTGT
CAAGTAGTGCGAAGCATTCATGGAAGAAACTTGTTCGGTTGGCACACAAGTGGAGTAGTCAAGAGTAG

mRNA sequence

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Protein sequence

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MPEKVISIIERVMRNFFWEGHKGGKLSHLVRWDLVTRNQFDGGFGIGGLKSKNIALLAKWGWRYMKEEDSLWVSSSAKHSWKKLVRLAHKWSSQE

Clc09G18090 (gene) of Watermelon (cordophanus) v2 genome