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Clc09G18150 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G18150
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase domain-containing protein
Genome locationClcChr09:30207775..30218571
RNA-Seq ExpressionClc09G18150
SyntenyClc09G18150
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038877407.1 uncharacterized protein LOC120069696 [Benincasa hispida]2.9e-2777.27Show/hide
Query:  KRKRPSFQAEMMDIMRSTVEMQNTHMGRFASWQKEKYELEFECREEVVNAIYNIDSLNEDDQVALIDLLVTYIQKTNCFLAVSEHARK
        KRKR SFQ EM+DIMRSTVEM +THMGR ASWQK+KYELEF  ++EVVNAIYNID L+ED QV LIDL+VT IQKT+CFLAV EHA K
Subjt:  KRKRPSFQAEMMDIMRSTVEMQNTHMGRFASWQKEKYELEFECREEVVNAIYNIDSLNEDDQVALIDLLVTYIQKTNCFLAVSEHARK

XP_038887234.1 uncharacterized protein LOC120077425 [Benincasa hispida]8.3e-2770.3Show/hide
Query:  ASVLLHRQKGTFVKRKRPSFQAEMMDIMRSTVEMQNTHMGRFASWQKEKYELEFECREEVVNAIYNIDSLNEDDQVALIDLLVTYIQKTNCFLAVSEHAR
        ASV     +G+  KRKR SFQ EM+DI++STVEMQ+THMGR ASWQ EKYELE    +EVVNAIYNID L E+DQV LIDL+VT IQKT+CFLAV EHAR
Subjt:  ASVLLHRQKGTFVKRKRPSFQAEMMDIMRSTVEMQNTHMGRFASWQKEKYELEFECREEVVNAIYNIDSLNEDDQVALIDLLVTYIQKTNCFLAVSEHAR

Query:  K
        K
Subjt:  K

XP_038895773.1 uncharacterized protein LOC120083935 [Benincasa hispida]4.0e-2183.58Show/hide
Query:  QNTHMGRFASWQKEKYELEFECREEVVNAIYNIDSLNEDDQVALIDLLVTYIQKTNCFLAVSEHARK
        ++THMGR ASWQKEKYELEF  R+EVVNAIYNID L+EDDQV LIDLLVT IQKTNCFLAV EHARK
Subjt:  QNTHMGRFASWQKEKYELEFECREEVVNAIYNIDSLNEDDQVALIDLLVTYIQKTNCFLAVSEHARK

XP_038896380.1 uncharacterized protein LOC120084641 [Benincasa hispida]1.7e-3278.22Show/hide
Query:  ASVLLHRQKGTFVKRKRPSFQAEMMDIMRSTVEMQNTHMGRFASWQKEKYELEFECREEVVNAIYNIDSLNEDDQVALIDLLVTYIQKTNCFLAVSEHAR
        ASVL    +G+  KRKRPSFQAEM+DIMRSTVEMQ+THMGR ASWQKEKYELEF  R+EVVNAIY+ID L+EDDQV  IDLLVT IQKT+CFLAV EHAR
Subjt:  ASVLLHRQKGTFVKRKRPSFQAEMMDIMRSTVEMQNTHMGRFASWQKEKYELEFECREEVVNAIYNIDSLNEDDQVALIDLLVTYIQKTNCFLAVSEHAR

Query:  K
        K
Subjt:  K

XP_038899910.1 uncharacterized protein LOC120087100 [Benincasa hispida]4.9e-1940.5Show/hide
Query:  GLGWNPK---------------PNLAKG--GVSFSQFEEEIENKYEKLEAVVTTFQEENPMLRSQFSNVQDQLAKMVRQLGAQQRQGDDPQTTRSDFSRR
        G GWN +               PN AKG    SF  + +++   + K  AV  + ++   M ++ F   +D++     +LG+Q  +  + + T S  ++ 
Subjt:  GLGWNPK---------------PNLAKG--GVSFSQFEEEIENKYEKLEAVVTTFQEENPMLRSQFSNVQDQLAKMVRQLGAQQRQGDDPQTTRSDFSRR

Query:  GNIDIFIDAKLFVHISFANEIWTFASVLLHRQKGTFVKRKRPSFQAEMMDIMRSTVEMQNTHMGRFASWQKEKYELEFECREEVVNAIYNIDSLNEDDQV
              ID +       A +    ASV +   +G+  KRKRPSFQAEM+DIMRSTVEMQ+THMGR ASWQKEKYELEFE  +EVVNAIY+ID L+EDD++
Subjt:  GNIDIFIDAKLFVHISFANEIWTFASVLLHRQKGTFVKRKRPSFQAEMMDIMRSTVEMQNTHMGRFASWQKEKYELEFECREEVVNAIYNIDSLNEDDQV

TrEMBL top hitse value%identityAlignment
A0A5A7UKB8 DUF4218 domain-containing protein4.0e-1153.85Show/hide
Query:  LATQEQIRLSSQDGLELTPKVVICERVLGKRSSHTKGLGWNPKPNLAKGGVSFSQFEEEIENKYEKLEAVVTTFQEEN
        +A QE+IR SS+DG + TPK +I E+VL KRS HTKGLGW   PN+A    S   FE++I +KYEKL+  V   +EEN
Subjt:  LATQEQIRLSSQDGLELTPKVVICERVLGKRSSHTKGLGWNPKPNLAKGGVSFSQFEEEIENKYEKLEAVVTTFQEEN

A0A5H2XP17 TatD related DNase1.3e-0647.76Show/hide
Query:  KINRSKCQILGIDCGKEKLYRRAGMIGCEVGSFPSSYFGLPLGGNPIAISFGTLPLRRLGRVINHGR
        KIN++K  ILGI+   E L   AG  GCEVG +P  Y GLPLGGNP A++F    L ++ + + +GR
Subjt:  KINRSKCQILGIDCGKEKLYRRAGMIGCEVGSFPSSYFGLPLGGNPIAISFGTLPLRRLGRVINHGR

A0A6J1DUH3 uncharacterized protein LOC1110232122.3e-0634.23Show/hide
Query:  QEQIRLSSQDGLELTPKVVICERVLGKRSSHTKGLGWNPKPNLAKGG-----VSFSQFEEEIENKYEKLEAVVTTFQEENPMLRSQFSNVQDQLAKMVRQ
        Q  I+  +Q+G E   +   C +VLG R  H KGLG+ P+P L K G      S + +E+E+E K E +E  +   + EN  L+   S  +D+  ++ R 
Subjt:  QEQIRLSSQDGLELTPKVVICERVLGKRSSHTKGLGWNPKPNLAKGG-----VSFSQFEEEIENKYEKLEAVVTTFQEENPMLRSQFSNVQDQLAKMVRQ

Query:  LGAQQRQGDDP
        +    RQGD P
Subjt:  LGAQQRQGDDP

M5WJI4 zf-RVT domain-containing protein1.0e-0658.82Show/hide
Query:  KINRSKCQILGIDCGKEKLYRRAGMIGCEVGSFPSSYFGLPLGGNPIAISF
        KIN+SKC ++GI+     L   AG  GCEVG++P SY GLPLGGNP AI F
Subjt:  KINRSKCQILGIDCGKEKLYRRAGMIGCEVGSFPSSYFGLPLGGNPIAISF

M5XUF8 Reverse transcriptase domain-containing protein (Fragment)1.0e-0658.82Show/hide
Query:  KINRSKCQILGIDCGKEKLYRRAGMIGCEVGSFPSSYFGLPLGGNPIAISF
        KIN+SKC ++GI+     L   AG  GCEVG++P SY GLPLGGNP AI F
Subjt:  KINRSKCQILGIDCGKEKLYRRAGMIGCEVGSFPSSYFGLPLGGNPIAISF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTTTTTAGCTCCCTTAGCAAACGATGGATTAAGGGAAGAACCTACTGCTCAGAATGATGACAATGAGTTGTTAGATTTTTTAAATGATTTGCGAGAACCGATGAG
AGAAATGGAATATGATGAAGATGAAGAAGAATTTGGGGATGAAATGCTGATAACATTGAACAAATTGGCAACGCAAGAGCAGATCAGACTATCATCACAAGATGGACTTG
AACTAACACCGAAGGTAGTTATTTGTGAACGAGTTTTGGGGAAACGATCAAGCCACACTAAAGGTCTTGGATGGAACCCAAAACCCAATTTAGCTAAAGGTGGTGTATCT
TTCTCACAGTTTGAGGAAGAGATTGAGAATAAGTATGAAAAGCTTGAGGCGGTGGTGACGACCTTCCAGGAGGAAAATCCCATGTTAAGGTCACAATTTTCGAATGTTCA
AGATCAATTGGCTAAAATGGTGAGACAGTTAGGTGCGCAACAAAGGCAAGGAGATGACCCTCAAACAACTAGGAGCGACTTCTCCCGACGTGGAAACATCGACATTTTTA
TCGACGCAAAACTTTTCGTCCACATAAGCTTTGCCAACGAAATTTGGACTTTTGCCAGTGTTTTATTGCATCGGCAAAAGGGAACATTCGTTAAGAGGAAGAGGCCATCA
TTCCAAGCTGAAATGATGGACATAATGAGATCAACTGTTGAAATGCAGAACACACACATGGGTAGATTTGCATCGTGGCAAAAGGAAAAGTATGAGTTGGAGTTCGAGTG
TCGAGAGGAAGTAGTGAACGCCATATATAACATTGATAGCTTGAATGAGGATGACCAAGTCGCCCTTATTGACCTCCTTGTCACATACATTCAGAAGACAAATTGCTTCC
TTGCAGTATCAGAACATGCAAGGAAGAGTGGCATCATTTTCGTATATGATCATGTCTTCGAGATTTTTAACGTTAATTTTGCAACATCTCAAGCTTTACCGCCAGACCTC
CCCCGCCCTCCCTCACCCCCTCGTGCGTCTCTCTCCCGCACAGTATCTCTCTCTCTTCCAGCCATCTCTCCCTCACCCCAGTCTCGTACGCCAGCGCCGCCGCGACCTCC
ACACCGGACGACGACTGCCGCCGTCAGCACCACCGTCGCACGTCTCTGGTCGACGCCGCGGCGGCCGATTTTAGTTTTGGGTAAGAGTTTTACTCCTGCTATGTCTCTCT
CGCAATTCTGTATCCCTCCACTTCCATTGTCCTTCTCTCAAGCCTTCAATCTTTTAGTTTCTCTGCCCATGACCACCCCAAGCTTCACTCTAGCAACCACGGGCAACGAC
AGATTCACCTGGTACATGGCGAGTCTGAGAATGTCGCATGTGGCGCTGCAATTTAAAATTAATAGGAGTAAGTGTCAGATATTGGGTATCGATTGTGGCAAGGAGAAGCT
CTATAGACGTGCGGGTATGATTGGTTGTGAAGTTGGGTCCTTTCCTTCCTCCTACTTTGGCCTTCCTCTTGGAGGGAATCCAATAGCCATCTCTTTTGGGACTCTCCCAT
TGAGAAGACTGGGAAGAGTTATCAATCATGGTCGATTGGGGTTAAGAACTGATGAATGGGAAGACCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTTTTTAGCTCCCTTAGCAAACGATGGATTAAGGGAAGAACCTACTGCTCAGAATGATGACAATGAGTTGTTAGATTTTTTAAATGATTTGCGAGAACCGATGAG
AGAAATGGAATATGATGAAGATGAAGAAGAATTTGGGGATGAAATGCTGATAACATTGAACAAATTGGCAACGCAAGAGCAGATCAGACTATCATCACAAGATGGACTTG
AACTAACACCGAAGGTAGTTATTTGTGAACGAGTTTTGGGGAAACGATCAAGCCACACTAAAGGTCTTGGATGGAACCCAAAACCCAATTTAGCTAAAGGTGGTGTATCT
TTCTCACAGTTTGAGGAAGAGATTGAGAATAAGTATGAAAAGCTTGAGGCGGTGGTGACGACCTTCCAGGAGGAAAATCCCATGTTAAGGTCACAATTTTCGAATGTTCA
AGATCAATTGGCTAAAATGGTGAGACAGTTAGGTGCGCAACAAAGGCAAGGAGATGACCCTCAAACAACTAGGAGCGACTTCTCCCGACGTGGAAACATCGACATTTTTA
TCGACGCAAAACTTTTCGTCCACATAAGCTTTGCCAACGAAATTTGGACTTTTGCCAGTGTTTTATTGCATCGGCAAAAGGGAACATTCGTTAAGAGGAAGAGGCCATCA
TTCCAAGCTGAAATGATGGACATAATGAGATCAACTGTTGAAATGCAGAACACACACATGGGTAGATTTGCATCGTGGCAAAAGGAAAAGTATGAGTTGGAGTTCGAGTG
TCGAGAGGAAGTAGTGAACGCCATATATAACATTGATAGCTTGAATGAGGATGACCAAGTCGCCCTTATTGACCTCCTTGTCACATACATTCAGAAGACAAATTGCTTCC
TTGCAGTATCAGAACATGCAAGGAAGAGTGGCATCATTTTCGTATATGATCATGTCTTCGAGATTTTTAACGTTAATTTTGCAACATCTCAAGCTTTACCGCCAGACCTC
CCCCGCCCTCCCTCACCCCCTCGTGCGTCTCTCTCCCGCACAGTATCTCTCTCTCTTCCAGCCATCTCTCCCTCACCCCAGTCTCGTACGCCAGCGCCGCCGCGACCTCC
ACACCGGACGACGACTGCCGCCGTCAGCACCACCGTCGCACGTCTCTGGTCGACGCCGCGGCGGCCGATTTTAGTTTTGGGTAAGAGTTTTACTCCTGCTATGTCTCTCT
CGCAATTCTGTATCCCTCCACTTCCATTGTCCTTCTCTCAAGCCTTCAATCTTTTAGTTTCTCTGCCCATGACCACCCCAAGCTTCACTCTAGCAACCACGGGCAACGAC
AGATTCACCTGGTACATGGCGAGTCTGAGAATGTCGCATGTGGCGCTGCAATTTAAAATTAATAGGAGTAAGTGTCAGATATTGGGTATCGATTGTGGCAAGGAGAAGCT
CTATAGACGTGCGGGTATGATTGGTTGTGAAGTTGGGTCCTTTCCTTCCTCCTACTTTGGCCTTCCTCTTGGAGGGAATCCAATAGCCATCTCTTTTGGGACTCTCCCAT
TGAGAAGACTGGGAAGAGTTATCAATCATGGTCGATTGGGGTTAAGAACTGATGAATGGGAAGACCCTTAG
Protein sequenceShow/hide protein sequence
MTFLAPLANDGLREEPTAQNDDNELLDFLNDLREPMREMEYDEDEEEFGDEMLITLNKLATQEQIRLSSQDGLELTPKVVICERVLGKRSSHTKGLGWNPKPNLAKGGVS
FSQFEEEIENKYEKLEAVVTTFQEENPMLRSQFSNVQDQLAKMVRQLGAQQRQGDDPQTTRSDFSRRGNIDIFIDAKLFVHISFANEIWTFASVLLHRQKGTFVKRKRPS
FQAEMMDIMRSTVEMQNTHMGRFASWQKEKYELEFECREEVVNAIYNIDSLNEDDQVALIDLLVTYIQKTNCFLAVSEHARKSGIIFVYDHVFEIFNVNFATSQALPPDL
PRPPSPPRASLSRTVSLSLPAISPSPQSRTPAPPRPPHRTTTAAVSTTVARLWSTPRRPILVLGKSFTPAMSLSQFCIPPLPLSFSQAFNLLVSLPMTTPSFTLATTGND
RFTWYMASLRMSHVALQFKINRSKCQILGIDCGKEKLYRRAGMIGCEVGSFPSSYFGLPLGGNPIAISFGTLPLRRLGRVINHGRLGLRTDEWEDP