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Clc09G18220 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G18220
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPhloem filament protein
Genome locationClcChr09:30433960..30434722
RNA-Seq ExpressionClc09G18220
SyntenyClc09G18220
Gene Ontology termsGO:0004869 - cysteine-type endopeptidase inhibitor activity (molecular function)
InterPro domainsIPR009994 - Phloem filament PP1
IPR027214 - Cystatin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34264.1 phloem filament protein [Cucumis melo subsp. melo]2.4e-1138.82Show/hide
Query:  IGGHIGVGFHLPGIGGGIGLGGGIDLGGGIRLGLGGGRSKYPSSGNGGSDSNGGNGGTDPSTWLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYE
        IGG IG+GF LPG    I +GGGI +GG      GG +S  PS                   W+++ + + P V E  KFAVD FN KY+N L FQ V E
Subjt:  IGGHIGVGFHLPGIGGGIGLGGGIDLGGGIRLGLGGGRSKYPSSGNGGSDSNGGNGGTDPSTWLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYE

Query:  AWIQFVDGNTKRFRLYLKIIDCLQRFLKFEAIVREEINGDVLQRTLESFDRL
        AW+  V+ N K + + L   DC  R L+F A+V E+         L SF+R+
Subjt:  AWIQFVDGNTKRFRLYLKIIDCLQRFLKFEAIVREEINGDVLQRTLESFDRL

ADN34265.1 phloem filament protein [Cucumis melo subsp. melo]1.0e-0941.49Show/hide
Query:  WLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYEAWIQFVD--GNTKRFRLYLKIIDCLQRFLKFEAIVREE--INGDVLQRTLESFDRL
        W+K+P    P +Q + +  V+ F  KY  +L ++ V E W Q +D  GNT R+RL+++  DCL+R LKFEAI+ ++   N +    TLESFDR+
Subjt:  WLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYEAWIQFVD--GNTKRFRLYLKIIDCLQRFLKFEAIVREE--INGDVLQRTLESFDRL

TYK06877.1 phloem filament protein [Cucumis melo var. makuwa]7.7e-1041.49Show/hide
Query:  WLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYEAWIQFVD--GNTKRFRLYLKIIDCLQRFLKFEAIVREE--INGDVLQRTLESFDRL
        W+K+P    P +Q + +  V+ F  KY  +L ++ V E W Q +D  GNT R+RL+++  DCL+R LKFEAI+ ++   N +    TLESFDR+
Subjt:  WLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYEAWIQFVD--GNTKRFRLYLKIIDCLQRFLKFEAIVREE--INGDVLQRTLESFDRL

XP_023530188.1 uncharacterized protein LOC111792827 [Cucurbita pepo subsp. pepo]7.7e-1044.19Show/hide
Query:  WLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYEAWIQFVDGNTKRFRLYLKIIDCLQRFLKFEAIVREEINGDVLQRTLES
        W++IP  + P VQ V KFAVD FN KY N L+F  VYE W   +  N+ ++RL++K ID L R L +E ++ E        R LES
Subjt:  WLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYEAWIQFVDGNTKRFRLYLKIIDCLQRFLKFEAIVREEINGDVLQRTLES

XP_038887120.1 uncharacterized protein LOC120077305 [Benincasa hispida]1.7e-1742.11Show/hide
Query:  MTIGGHIGVGFHLPGIGGGIGLGGGIDLGGGIRLGLGGGRSKYPSSGNGGSDSNGGNGGTDPSTWLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEV
        MTIGG +GVG HLP    GIG+GGGI +GGG  LG G                    G  +P   + +P +++P +QE+GKFAV+ FN KY + L+FQ V
Subjt:  MTIGGHIGVGFHLPGIGGGIGLGGGIDLGGGIRLGLGGGRSKYPSSGNGGSDSNGGNGGTDPSTWLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEV

Query:  YEAWIQFVDGNTKRFRLYLKIIDCLQRFLKFEAIVREEINGDVLQRTLESFD
        Y+     +D     + L+L  IDCL+R L F+A V E      +Q TLESFD
Subjt:  YEAWIQFVDGNTKRFRLYLKIIDCLQRFLKFEAIVREEINGDVLQRTLESFD

TrEMBL top hitse value%identityAlignment
A0A5A7SN25 Phloem filament protein4.9e-1041.49Show/hide
Query:  WLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYEAWIQFVD--GNTKRFRLYLKIIDCLQRFLKFEAIVREE--INGDVLQRTLESFDRL
        W+K+P    P +Q + +  V+ F  KY  +L ++ V E W Q +D  GNT R+RL+++  DCL+R LKFEAI+ ++   N +    TLESFDR+
Subjt:  WLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYEAWIQFVD--GNTKRFRLYLKIIDCLQRFLKFEAIVREE--INGDVLQRTLESFDRL

A0A5A7SQL4 Phloem filament protein1.2e-1138.82Show/hide
Query:  IGGHIGVGFHLPGIGGGIGLGGGIDLGGGIRLGLGGGRSKYPSSGNGGSDSNGGNGGTDPSTWLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYE
        IGG IG+GF LPG    I +GGGI +GG      GG +S  PS                   W+++ + + P V E  KFAVD FN KY+N L FQ V E
Subjt:  IGGHIGVGFHLPGIGGGIGLGGGIDLGGGIRLGLGGGRSKYPSSGNGGSDSNGGNGGTDPSTWLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYE

Query:  AWIQFVDGNTKRFRLYLKIIDCLQRFLKFEAIVREEINGDVLQRTLESFDRL
        AW+  V+ N K + + L   DC  R L+F A+V E+         L SF+R+
Subjt:  AWIQFVDGNTKRFRLYLKIIDCLQRFLKFEAIVREEINGDVLQRTLESFDRL

A0A5D3C4U6 Phloem filament protein3.7e-1041.49Show/hide
Query:  WLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYEAWIQFVD--GNTKRFRLYLKIIDCLQRFLKFEAIVREE--INGDVLQRTLESFDRL
        W+K+P    P +Q + +  V+ F  KY  +L ++ V E W Q +D  GNT R+RL+++  DCL+R LKFEAI+ ++   N +    TLESFDR+
Subjt:  WLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYEAWIQFVD--GNTKRFRLYLKIIDCLQRFLKFEAIVREE--INGDVLQRTLESFDRL

E5GCR6 Phloem filament protein1.2e-1138.82Show/hide
Query:  IGGHIGVGFHLPGIGGGIGLGGGIDLGGGIRLGLGGGRSKYPSSGNGGSDSNGGNGGTDPSTWLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYE
        IGG IG+GF LPG    I +GGGI +GG      GG +S  PS                   W+++ + + P V E  KFAVD FN KY+N L FQ V E
Subjt:  IGGHIGVGFHLPGIGGGIGLGGGIDLGGGIRLGLGGGRSKYPSSGNGGSDSNGGNGGTDPSTWLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYE

Query:  AWIQFVDGNTKRFRLYLKIIDCLQRFLKFEAIVREEINGDVLQRTLESFDRL
        AW+  V+ N K + + L   DC  R L+F A+V E+         L SF+R+
Subjt:  AWIQFVDGNTKRFRLYLKIIDCLQRFLKFEAIVREEINGDVLQRTLESFDRL

E5GCR7 Phloem filament protein4.9e-1041.49Show/hide
Query:  WLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYEAWIQFVD--GNTKRFRLYLKIIDCLQRFLKFEAIVREE--INGDVLQRTLESFDRL
        W+K+P    P +Q + +  V+ F  KY  +L ++ V E W Q +D  GNT R+RL+++  DCL+R LKFEAI+ ++   N +    TLESFDR+
Subjt:  WLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYEAWIQFVD--GNTKRFRLYLKIIDCLQRFLKFEAIVREE--INGDVLQRTLESFDRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTATTGGTGGACATATTGGTGTTGGCTTTCATCTTCCAGGTATTGGGGGTGGCATCGGTCTTGGGGGTGGCATTGATCTGGGTGGTGGCATCAGACTCGGTCTCGG
CGGCGGCCGCAGTAAGTACCCTAGTAGTGGTAACGGTGGTAGCGACAGTAATGGGGGAAACGGCGGTACTGATCCATCCACATGGCTGAAAATTCCCCATTCGGAAAATC
CCCATGTTCAAGAAGTTGGAAAGTTTGCAGTGGATTATTTCAACGACAAATATAAAAATACTCTCAGGTTCCAGGAGGTTTACGAAGCTTGGATTCAGTTCGTGGATGGC
AACACCAAAAGGTTTCGTCTCTATCTAAAAATAATAGACTGTTTGCAACGTTTTCTCAAGTTCGAGGCTATTGTGCGTGAGGAAATAAATGGCGATGTCCTGCAGAGGAC
ACTTGAATCTTTCGACCGACTCTAA
mRNA sequenceShow/hide mRNA sequence
TATCTATCCACATGAATACACTTGTATATAAAGATCCAACAACTTATGGAAGGTAACCTCACCACACAAATTTCAATATTATCAAATATCAAAAGTTGAAAAAAAAGAAG
AAAAAAAATGACTATTGGTGGACATATTGGTGTTGGCTTTCATCTTCCAGGTATTGGGGGTGGCATCGGTCTTGGGGGTGGCATTGATCTGGGTGGTGGCATCAGACTCG
GTCTCGGCGGCGGCCGCAGTAAGTACCCTAGTAGTGGTAACGGTGGTAGCGACAGTAATGGGGGAAACGGCGGTACTGATCCATCCACATGGCTGAAAATTCCCCATTCG
GAAAATCCCCATGTTCAAGAAGTTGGAAAGTTTGCAGTGGATTATTTCAACGACAAATATAAAAATACTCTCAGGTTCCAGGAGGTTTACGAAGCTTGGATTCAGTTCGT
GGATGGCAACACCAAAAGGTTTCGTCTCTATCTAAAAATAATAGACTGTTTGCAACGTTTTCTCAAGTTCGAGGCTATTGTGCGTGAGGAAATAAATGGCGATGTCCTGC
AGAGGACACTTGAATCTTTCGACCGACTCTAATAAAACAACTTATATATCAAATGTCTACTTATGTCATCTAAAATATAAATGTATGTCACATCCACTACTTATATCATA
CTCTACTCTCTTTGAATATCTATTTATATCAAATAATGGGGGAGAAAATACATTTTGTGTTTTAGTTTTTTATTTTGATTCCTTGTCTTAGATTTGATATGAG
Protein sequenceShow/hide protein sequence
MTIGGHIGVGFHLPGIGGGIGLGGGIDLGGGIRLGLGGGRSKYPSSGNGGSDSNGGNGGTDPSTWLKIPHSENPHVQEVGKFAVDYFNDKYKNTLRFQEVYEAWIQFVDG
NTKRFRLYLKIIDCLQRFLKFEAIVREEINGDVLQRTLESFDRL