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Clc09G18580 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G18580
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationClcChr09:31058680..31061193
RNA-Seq ExpressionClc09G18580
SyntenyClc09G18580
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN60188.1 hypothetical protein VITISV_002117 [Vitis vinifera]7.6e-0549.21Show/hide
Query:  LASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQFEGGLY
        +A+ E +   NWY DSG SNHVTT+ NNLV  T Y  NE V V N Q  +   ++G+ +GGLY
Subjt:  LASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQFEGGLY

KAA0036141.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]2.0e-0530.95Show/hide
Query:  EKRKEPSWFDMQSELLLGPQNNGANQNGQKPGNGGNHNSNGAHRGGGNFRGVEEAKVINLHARNSYNPSALATTQASNAFLASLEIVAYANWYADSGVSN
        +++ + SW DMQSELL+  +    +QN  K   G     + +++                      N +A  TT  SN+F+   E V  +NWY D+G +N
Subjt:  EKRKEPSWFDMQSELLLGPQNNGANQNGQKPGNGGNHNSNGAHRGGGNFRGVEEAKVINLHARNSYNPSALATTQASNAFLASLEIVAYANWYADSGVSN

Query:  HVTTDYNNLVNATKYASNESVVVANGQG---YEPNH---------------MKGQFEGGLYQLKEVGM
        HVT DY+NL N  KY+  E V+V N Q    Y   H               M+G  + GLY L+ V +
Subjt:  HVTTDYNNLVNATKYASNESVVVANGQG---YEPNH---------------MKGQFEGGLYQLKEVGM

RVW41150.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]7.6e-0549.21Show/hide
Query:  LASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQFEGGLY
        +A+ E +   NWY DSG SNHVTT+ NNLV  T Y  NE V V N Q  +   ++G+ +GGLY
Subjt:  LASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQFEGGLY

TYK02246.1 uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]3.4e-0527.23Show/hide
Query:  FLQIAIGEGTSTGLDYLIGAMSFEEGSSSGVLSSIAIH-EFKLWVANVLKTFGTVFKGCLVFSQGLKKTIFAKCFNRLEKRKEPSWFDMQSELLLGPQNN
        F+   IGE  S     + G     +G+SS   ++  ++ +F  W+ + L   G ++      S   +     K FN  +   E +  D+     +    N
Subjt:  FLQIAIGEGTSTGLDYLIGAMSFEEGSSSGVLSSIAIH-EFKLWVANVLKTFGTVFKGCLVFSQGLKKTIFAKCFNRLEKRKEPSWFDMQSELLLGPQNN

Query:  GANQNGQKPGNGGNHNSNGAHRGGGNFRGVEEAKVINLHARNSYNPSALATTQASNAFLASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVV
         AN + ++PGN   HNSN ++  G         + + + A    N    A              V  +NWY DSG +NHVT DY+NL NA++Y+  E V+
Subjt:  GANQNGQKPGNGGNHNSNGAHRGGGNFRGVEEAKVINLHARNSYNPSALATTQASNAFLASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVV

Query:  VANGQGYEPNHMKGQFEGGLYQLK
        V N Q    N++  +F G  Y +K
Subjt:  VANGQGYEPNHMKGQFEGGLYQLK

XP_016901889.1 PREDICTED: uncharacterized protein LOC107991455 [Cucumis melo]9.0e-0651.32Show/hide
Query:  NSY-NPSALATTQASNAFLASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQF
        NSY NP+A  TTQ +N F A  EIV  +NWY DSG +N+VT DY NL N T+Y+S E   V NG   +  H  G F
Subjt:  NSY-NPSALATTQASNAFLASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQF

TrEMBL top hitse value%identityAlignment
A0A1S4E0Z3 uncharacterized protein LOC1079914554.3e-0651.32Show/hide
Query:  NSY-NPSALATTQASNAFLASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQF
        NSY NP+A  TTQ +N F A  EIV  +NWY DSG +N+VT DY NL N T+Y+S E   V NG   +  H  G F
Subjt:  NSY-NPSALATTQASNAFLASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQF

A0A438E0F0 Retrovirus-related Pol polyprotein from transposon RE13.7e-0549.21Show/hide
Query:  LASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQFEGGLY
        +A+ E +   NWY DSG SNHVTT+ NNLV  T Y  NE V V N Q  +   ++G+ +GGLY
Subjt:  LASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQFEGGLY

A0A5D3BVJ1 Uncharacterized protein1.6e-0527.23Show/hide
Query:  FLQIAIGEGTSTGLDYLIGAMSFEEGSSSGVLSSIAIH-EFKLWVANVLKTFGTVFKGCLVFSQGLKKTIFAKCFNRLEKRKEPSWFDMQSELLLGPQNN
        F+   IGE  S     + G     +G+SS   ++  ++ +F  W+ + L   G ++      S   +     K FN  +   E +  D+     +    N
Subjt:  FLQIAIGEGTSTGLDYLIGAMSFEEGSSSGVLSSIAIH-EFKLWVANVLKTFGTVFKGCLVFSQGLKKTIFAKCFNRLEKRKEPSWFDMQSELLLGPQNN

Query:  GANQNGQKPGNGGNHNSNGAHRGGGNFRGVEEAKVINLHARNSYNPSALATTQASNAFLASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVV
         AN + ++PGN   HNSN ++  G         + + + A    N    A              V  +NWY DSG +NHVT DY+NL NA++Y+  E V+
Subjt:  GANQNGQKPGNGGNHNSNGAHRGGGNFRGVEEAKVINLHARNSYNPSALATTQASNAFLASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVV

Query:  VANGQGYEPNHMKGQFEGGLYQLK
        V N Q    N++  +F G  Y +K
Subjt:  VANGQGYEPNHMKGQFEGGLYQLK

A0A5D3CPY2 Retrotransposon protein, putative, Ty1-copia subclass9.7e-0630.95Show/hide
Query:  EKRKEPSWFDMQSELLLGPQNNGANQNGQKPGNGGNHNSNGAHRGGGNFRGVEEAKVINLHARNSYNPSALATTQASNAFLASLEIVAYANWYADSGVSN
        +++ + SW DMQSELL+  +    +QN  K   G     + +++                      N +A  TT  SN+F+   E V  +NWY D+G +N
Subjt:  EKRKEPSWFDMQSELLLGPQNNGANQNGQKPGNGGNHNSNGAHRGGGNFRGVEEAKVINLHARNSYNPSALATTQASNAFLASLEIVAYANWYADSGVSN

Query:  HVTTDYNNLVNATKYASNESVVVANGQG---YEPNH---------------MKGQFEGGLYQLKEVGM
        HVT DY+NL N  KY+  E V+V N Q    Y   H               M+G  + GLY L+ V +
Subjt:  HVTTDYNNLVNATKYASNESVVVANGQG---YEPNH---------------MKGQFEGGLYQLKEVGM

A5AG09 Integrase catalytic domain-containing protein3.7e-0549.21Show/hide
Query:  LASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQFEGGLY
        +A+ E +   NWY DSG SNHVTT+ NNLV  T Y  NE V V N Q  +   ++G+ +GGLY
Subjt:  LASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQFEGGLY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCTTCAGATTGCTATCGGTGAGGGCACAAGCACTGGCCTGGACTACTTAATTGGAGCGATGAGTTTTGAAGAAGGATCGAGTAGTGGAGTTTTAAGCTCGATAGC
TATTCATGAGTTTAAGTTATGGGTTGCGAATGTGCTAAAGACCTTTGGAACAGTATTCAAAGGTTGTTTGGTGTTCAGTCAAGGGTTGAAGAAGACGATCTTCGCCAAGT
GTTTCAATCGACTCGAAAAGAGAAAGGAGCCATCTTGGTTTGATATGCAGTCTGAGCTTCTACTGGGACCTCAAAACAATGGAGCTAATCAGAATGGACAGAAGCCTGGT
AATGGTGGCAATCATAATTCAAATGGAGCACATAGAGGAGGTGGAAATTTCAGAGGCGTGGAAGAGGCAAAGGTAATAAACCTACATGCCAGAAATTCCTATAATCCTTC
TGCTTTAGCCACCACTCAAGCTTCAAATGCATTTTTAGCCAGTCTTGAGATTGTTGCATATGCCAATTGGTATGCAGACAGTGGAGTATCAAACCATGTAACAACAGACT
ATAACAATCTGGTCAATGCCACTAAGTATGCAAGTAATGAATCTGTGGTTGTTGCTAATGGACAAGGGTATGAGCCAAACCATATGAAGGGGCAGTTTGAAGGTGGACTT
TATCAGCTGAAGGAAGTAGGAATGAACGTAAGCATAGACATCTGGTGGATTTGGTTTCACATTGCTTGCTCAAGCTTTCTTACGATTACATCTCTGGTGGGATGCATTCG
TATATGCAACTTTTCTCATAAATGGTATGCCAACTCCGGTTCTAAGAGTGGACATGACAGCAACAACCAGTGCACAAAAGCCTTCACCAACTCAATGGCTATCTTTACCT
CCCACTATAATAACATCACAACACAAAACCATCTTCCAAACCCCACCACTCCTATCCCAAACAATACAAGTGATCCTTACACTATAGACATACCTTTAACTCCAGAAAAC
AATCCTCAACCCTCACCTTCCAACCCTATTGAACAGAACCACCTTCTTCTAGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCTTCAGATTGCTATCGGTGAGGGCACAAGCACTGGCCTGGACTACTTAATTGGAGCGATGAGTTTTGAAGAAGGATCGAGTAGTGGAGTTTTAAGCTCGATAGC
TATTCATGAGTTTAAGTTATGGGTTGCGAATGTGCTAAAGACCTTTGGAACAGTATTCAAAGGTTGTTTGGTGTTCAGTCAAGGGTTGAAGAAGACGATCTTCGCCAAGT
GTTTCAATCGACTCGAAAAGAGAAAGGAGCCATCTTGGTTTGATATGCAGTCTGAGCTTCTACTGGGACCTCAAAACAATGGAGCTAATCAGAATGGACAGAAGCCTGGT
AATGGTGGCAATCATAATTCAAATGGAGCACATAGAGGAGGTGGAAATTTCAGAGGCGTGGAAGAGGCAAAGGTAATAAACCTACATGCCAGAAATTCCTATAATCCTTC
TGCTTTAGCCACCACTCAAGCTTCAAATGCATTTTTAGCCAGTCTTGAGATTGTTGCATATGCCAATTGGTATGCAGACAGTGGAGTATCAAACCATGTAACAACAGACT
ATAACAATCTGGTCAATGCCACTAAGTATGCAAGTAATGAATCTGTGGTTGTTGCTAATGGACAAGGGTATGAGCCAAACCATATGAAGGGGCAGTTTGAAGGTGGACTT
TATCAGCTGAAGGAAGTAGGAATGAACGTAAGCATAGACATCTGGTGGATTTGGTTTCACATTGCTTGCTCAAGCTTTCTTACGATTACATCTCTGGTGGGATGCATTCG
TATATGCAACTTTTCTCATAAATGGTATGCCAACTCCGGTTCTAAGAGTGGACATGACAGCAACAACCAGTGCACAAAAGCCTTCACCAACTCAATGGCTATCTTTACCT
CCCACTATAATAACATCACAACACAAAACCATCTTCCAAACCCCACCACTCCTATCCCAAACAATACAAGTGATCCTTACACTATAGACATACCTTTAACTCCAGAAAAC
AATCCTCAACCCTCACCTTCCAACCCTATTGAACAGAACCACCTTCTTCTAGCATGA
Protein sequenceShow/hide protein sequence
MFLQIAIGEGTSTGLDYLIGAMSFEEGSSSGVLSSIAIHEFKLWVANVLKTFGTVFKGCLVFSQGLKKTIFAKCFNRLEKRKEPSWFDMQSELLLGPQNNGANQNGQKPG
NGGNHNSNGAHRGGGNFRGVEEAKVINLHARNSYNPSALATTQASNAFLASLEIVAYANWYADSGVSNHVTTDYNNLVNATKYASNESVVVANGQGYEPNHMKGQFEGGL
YQLKEVGMNVSIDIWWIWFHIACSSFLTITSLVGCIRICNFSHKWYANSGSKSGHDSNNQCTKAFTNSMAIFTSHYNNITTQNHLPNPTTPIPNNTSDPYTIDIPLTPEN
NPQPSPSNPIEQNHLLLA