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Clc09G18640 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G18640
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationClcChr09:31127010..31127456
RNA-Seq ExpressionClc09G18640
SyntenyClc09G18640
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8672566.1 G patch domain-containing protein TGH [Hibiscus syriacus]3.0e-1132.8Show/hide
Query:  YTSMDVTFFENQSFFTKTQIHGENMRNFKPLEVDY----FSTIP---------TIPITTEISSSTIN---EL--------------AIPESNQPRIPSQN
        Y S DVTFFENQ +F+ T+I GE+ + F+P++ D       ++P         T+PI +E + + +N   EL              +I   N P    + 
Subjt:  YTSMDVTFFENQSFFTKTQIHGENMRNFKPLEVDY----FSTIP---------TIPITTEISSSTIN---EL--------------AIPESNQPRIPSQN

Query:  RTP-----IVYTRRR----EATVHNQECQPPELDSLSLNTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY
         TP      VY+RRR    E       CQ P+ D ++  T   D +     +D    PI  RKGVR CT HPI KYVAY +   ++
Subjt:  RTP-----IVYTRRR----EATVHNQECQPPELDSLSLNTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY

PKA63925.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Apostasia shenzhenica]1.0e-1135.81Show/hide
Query:  MYTSMDVTFFENQSFFTKTQIHGENMRNFKPLEVDYFSTIPTIPITTEISSSTINELAIPESNQPRIPSQNRTPIVYTRRREATVHNQECQPPELDSLSL
        +Y SMDVTFFENQS+F K++I GEN R ++  +                         + +  Q  +PS   T  V+     +T  N + QP  L+    
Subjt:  MYTSMDVTFFENQSFFTKTQIHGENMRNFKPLEVDYFSTIPTIPITTEISSSTINELAIPESNQPRIPSQNRTPIVYTRRREATVHNQECQPPELDSLSL

Query:  NTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY
           E +  +  PL+DD   PI  RKGVR CT HPIE++VAY +  PSY
Subjt:  NTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY

RVW31350.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.3e-1138.26Show/hide
Query:  YTSMDVTFFENQSFFTKTQIHGENMRNFKPLEVDYFST--IPTIPITTEISSSTINELAIPESNQPRIPSQNRTPIVYTRRREATVHNQECQPPELDSLS
        YTSMDVTFFENQ F+ KT I GE   N+   E  ++ T    T P+++ +   T   L++PE+N   +P    TP   T+  +    N   QP       
Subjt:  YTSMDVTFFENQSFFTKTQIHGENMRNFKPLEVDYFST--IPTIPITTEISSSTINELAIPESNQPRIPSQNRTPIVYTRRREATVHNQECQPPELDSLS

Query:  LNTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY
           T  D+ S   L DDL  PI  RKGVRSCT HPI  +V+Y +   ++
Subjt:  LNTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY

RVW35272.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]5.1e-1134.39Show/hide
Query:  YTSMDVTFFENQSFFTKTQIHGENMRNFKPLEVDYFST--IPTIPITTEISSSTINELAIPESNQ--------PRIPSQNRTPIVYTRRREATVHNQECQ
        YTSMDVTFFENQ F+ KT I G+   N+   E  ++ T    T P+++ +   T   L++PE+N         P+   +N TP    +  +    N   Q
Subjt:  YTSMDVTFFENQSFFTKTQIHGENMRNFKPLEVDYFST--IPTIPITTEISSSTINELAIPESNQ--------PRIPSQNRTPIVYTRRREATVHNQECQ

Query:  PPELDSLSLNTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY
        P  +    LN++ +        +DDL  PI  RKGVRSCT HPI  +V Y +   ++
Subjt:  PPELDSLSLNTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY

RVX00496.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]5.1e-1140.27Show/hide
Query:  YTSMDVTFFENQSFFTKTQIHGEN--MRNFKPLEVDYFSTIPTIPITTEISSSTINELAIPESNQPRIPSQNRTPIVYTRRREATVHNQECQPPELDSLS
        YTSMDVTFFENQ F+ KT I GEN  +  F+  E +  ST  T  ++T +   T + L +P++N   +PS   TP + T+  +    N   Q        
Subjt:  YTSMDVTFFENQSFFTKTQIHGEN--MRNFKPLEVDYFSTIPTIPITTEISSSTINELAIPESNQPRIPSQNRTPIVYTRRREATVHNQECQPPELDSLS

Query:  LNTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY
        L  T  D+ S   L DDL  PI  RKGVRSCT HPI  +V+Y R   ++
Subjt:  LNTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY

TrEMBL top hitse value%identityAlignment
A0A2I0B7Z4 Retrovirus-related Pol polyprotein from transposon TNT 1-945.0e-1235.81Show/hide
Query:  MYTSMDVTFFENQSFFTKTQIHGENMRNFKPLEVDYFSTIPTIPITTEISSSTINELAIPESNQPRIPSQNRTPIVYTRRREATVHNQECQPPELDSLSL
        +Y SMDVTFFENQS+F K++I GEN R ++  +                         + +  Q  +PS   T  V+     +T  N + QP  L+    
Subjt:  MYTSMDVTFFENQSFFTKTQIHGENMRNFKPLEVDYFSTIPTIPITTEISSSTINELAIPESNQPRIPSQNRTPIVYTRRREATVHNQECQPPELDSLSL

Query:  NTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY
           E +  +  PL+DD   PI  RKGVR CT HPIE++VAY +  PSY
Subjt:  NTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY

A0A438D7B8 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-1138.26Show/hide
Query:  YTSMDVTFFENQSFFTKTQIHGENMRNFKPLEVDYFST--IPTIPITTEISSSTINELAIPESNQPRIPSQNRTPIVYTRRREATVHNQECQPPELDSLS
        YTSMDVTFFENQ F+ KT I GE   N+   E  ++ T    T P+++ +   T   L++PE+N   +P    TP   T+  +    N   QP       
Subjt:  YTSMDVTFFENQSFFTKTQIHGENMRNFKPLEVDYFST--IPTIPITTEISSSTINELAIPESNQPRIPSQNRTPIVYTRRREATVHNQECQPPELDSLS

Query:  LNTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY
           T  D+ S   L DDL  PI  RKGVRSCT HPI  +V+Y +   ++
Subjt:  LNTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY

A0A438DIG7 Retrovirus-related Pol polyprotein from transposon TNT 1-942.5e-1134.39Show/hide
Query:  YTSMDVTFFENQSFFTKTQIHGENMRNFKPLEVDYFST--IPTIPITTEISSSTINELAIPESNQ--------PRIPSQNRTPIVYTRRREATVHNQECQ
        YTSMDVTFFENQ F+ KT I G+   N+   E  ++ T    T P+++ +   T   L++PE+N         P+   +N TP    +  +    N   Q
Subjt:  YTSMDVTFFENQSFFTKTQIHGENMRNFKPLEVDYFST--IPTIPITTEISSSTINELAIPESNQ--------PRIPSQNRTPIVYTRRREATVHNQECQ

Query:  PPELDSLSLNTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY
        P  +    LN++ +        +DDL  PI  RKGVRSCT HPI  +V Y +   ++
Subjt:  PPELDSLSLNTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY

A0A438IV38 Retrovirus-related Pol polyprotein from transposon TNT 1-942.5e-1140.27Show/hide
Query:  YTSMDVTFFENQSFFTKTQIHGEN--MRNFKPLEVDYFSTIPTIPITTEISSSTINELAIPESNQPRIPSQNRTPIVYTRRREATVHNQECQPPELDSLS
        YTSMDVTFFENQ F+ KT I GEN  +  F+  E +  ST  T  ++T +   T + L +P++N   +PS   TP + T+  +    N   Q        
Subjt:  YTSMDVTFFENQSFFTKTQIHGEN--MRNFKPLEVDYFSTIPTIPITTEISSSTINELAIPESNQPRIPSQNRTPIVYTRRREATVHNQECQPPELDSLS

Query:  LNTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY
        L  T  D+ S   L DDL  PI  RKGVRSCT HPI  +V+Y R   ++
Subjt:  LNTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY

A0A6A2Y7I7 Ribonuclease H1.5e-1132.8Show/hide
Query:  YTSMDVTFFENQSFFTKTQIHGENMRNFKPLEVDY----FSTIP---------TIPITTEISSSTIN---EL--------------AIPESNQPRIPSQN
        Y S DVTFFENQ +F+ T+I GE+ + F+P++ D       ++P         T+PI +E + + +N   EL              +I   N P    + 
Subjt:  YTSMDVTFFENQSFFTKTQIHGENMRNFKPLEVDY----FSTIP---------TIPITTEISSSTIN---EL--------------AIPESNQPRIPSQN

Query:  RTP-----IVYTRRR----EATVHNQECQPPELDSLSLNTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY
         TP      VY+RRR    E       CQ P+ D ++  T   D +     +D    PI  RKGVR CT HPI KYVAY +   ++
Subjt:  RTP-----IVYTRRR----EATVHNQECQPPELDSLSLNTTEEDVTSMEPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATACATCCATGGATGTCACCTTCTTTGAAAATCAATCTTTCTTCACCAAGACCCAAATTCATGGGGAGAATATGAGAAATTTTAAGCCATTGGAAGTTGATTATTT
CTCCACCATTCCAACTATTCCCATCACTACGGAAATATCATCTTCTACCATAAATGAGCTTGCTATTCCTGAGTCTAACCAGCCTCGTATCCCCTCACAAAACCGAACAC
CGATTGTTTATACAAGACGAAGAGAGGCTACCGTACACAACCAAGAATGCCAACCACCTGAACTGGATTCATTATCACTGAATACCACTGAAGAGGATGTTACTTCTATG
GAACCTTTAATTGATGATTTGATCCTACCTATTGATCGGAGAAAAGGTGTTAGAAGTTGCACCAATCATCCTATTGAAAAATATGTTGCATATTGTAGATTTCATCCTTC
ATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATACATCCATGGATGTCACCTTCTTTGAAAATCAATCTTTCTTCACCAAGACCCAAATTCATGGGGAGAATATGAGAAATTTTAAGCCATTGGAAGTTGATTATTT
CTCCACCATTCCAACTATTCCCATCACTACGGAAATATCATCTTCTACCATAAATGAGCTTGCTATTCCTGAGTCTAACCAGCCTCGTATCCCCTCACAAAACCGAACAC
CGATTGTTTATACAAGACGAAGAGAGGCTACCGTACACAACCAAGAATGCCAACCACCTGAACTGGATTCATTATCACTGAATACCACTGAAGAGGATGTTACTTCTATG
GAACCTTTAATTGATGATTTGATCCTACCTATTGATCGGAGAAAAGGTGTTAGAAGTTGCACCAATCATCCTATTGAAAAATATGTTGCATATTGTAGATTTCATCCTTC
ATATTGA
Protein sequenceShow/hide protein sequence
MYTSMDVTFFENQSFFTKTQIHGENMRNFKPLEVDYFSTIPTIPITTEISSSTINELAIPESNQPRIPSQNRTPIVYTRRREATVHNQECQPPELDSLSLNTTEEDVTSM
EPLIDDLILPIDRRKGVRSCTNHPIEKYVAYCRFHPSY