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Clc09G18730 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G18730
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationClcChr09:31157352..31158412
RNA-Seq ExpressionClc09G18730
SyntenyClc09G18730
Gene Ontology termsGO:0010073 - meristem maintenance (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038951.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]2.7e-5456.67Show/hide
Query:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIG--------------
        +APQL H N+H L  RA GS+W+DQFCVTR ATHVVSQYRYMF+LLQ DQII EPYK V+  LPNFC + QDIW T+SPLICFHIG              
Subjt:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIG--------------

Query:  -KWH--------------LPDRRSSNSSLRDVANDADQVFTICNNNASYMEELHYMYDIPIAPPPVSRHRGRARAEEDEFDAVDHNVEELPPMMQTQMQS
          W+              +   RS+N+ LRDVA+D  QV  ICNNN  YMEE+H MYD+ I PPPV  HRGR R EE E D V HNVEE+PP   TQ QS
Subjt:  -KWH--------------LPDRRSSNSSLRDVANDADQVFTICNNNASYMEELHYMYDIPIAPPPVSRHRGRARAEEDEFDAVDHNVEELPPMMQTQMQS

Query:  HTDYASLMMM
         T Y S M M
Subjt:  HTDYASLMMM

KAA0055624.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]6.2e-5147.11Show/hide
Query:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR-------
        +APQL HVN +QL  RAYGS+WRDQFCVTRSATHVVSQYRYMF+LLQP QI+ EPYK V+D+LP+FCT+  +IW T+SPLICF+IG+WH PDR       
Subjt:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR-------

Query:  ------------------------------------------------------RSSNSSLRDVANDADQVFTICNNNASYMEELHYMYDIPIAPPPVSR
                                                              RS+N  L +VA+D  QV  ICNNN  YME +HYMYD+PI P PV R
Subjt:  ------------------------------------------------------RSSNSSLRDVANDADQVFTICNNNASYMEELHYMYDIPIAPPPVSR

Query:  HRGRARAEEDEFDAVDHNVEELPPMMQTQMQSHTDYASLMMM
         R   + E D+ + VD + EE+PPM  TQ +S  +Y S +MM
Subjt:  HRGRARAEEDEFDAVDHNVEELPPMMQTQMQSHTDYASLMMM

KAA0067080.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]1.3e-4842.75Show/hide
Query:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR-------
        +APQL HVN +QL  RAYGS+WRDQFCVTRSATHVVSQYRYMF+LLQP QI+ EPYK V+D+LP+FCT+  +IW T+SPLICF+IG+WH PDR       
Subjt:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR-------

Query:  ---------------------------------------------------------------------------------RSSNSSLRDVANDADQVFT
                                                                                         RS+N  LR+VA+D  QV  
Subjt:  ---------------------------------------------------------------------------------RSSNSSLRDVANDADQVFT

Query:  ICNNNASYMEELHYMYDIPIAPPPVSRHRGRARAEEDEFDAVDHNVEELPPMMQTQMQSHTDYASLMMM
        ICN+N  YME +HYMYD+PI P PV R R   + E D+ + VD + EE+PPM  TQ QS  +Y S +MM
Subjt:  ICNNNASYMEELHYMYDIPIAPPPVSRHRGRARAEEDEFDAVDHNVEELPPMMQTQMQSHTDYASLMMM

TYJ95836.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]3.8e-4842.38Show/hide
Query:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR-------
        +APQL HVN +QL  RAYGS+WRDQFCVTRSATHVVSQYRYMF+LLQP QI+ EPYK V+D+LP+FCT+  +IW T+SPLICF+IG+WH PDR       
Subjt:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR-------

Query:  ---------------------------------------------------------------------------------RSSNSSLRDVANDADQVFT
                                                                                         RS+N  LR+VA+D  QV  
Subjt:  ---------------------------------------------------------------------------------RSSNSSLRDVANDADQVFT

Query:  ICNNNASYMEELHYMYDIPIAPPPVSRHRGRARAEEDEFDAVDHNVEELPPMMQTQMQSHTDYASLMMM
        ICN+N  YME +HYMYD+PI P PV R R   + E D+ + VD + +E+PPM  TQ QS  +Y S +MM
Subjt:  ICNNNASYMEELHYMYDIPIAPPPVSRHRGRARAEEDEFDAVDHNVEELPPMMQTQMQSHTDYASLMMM

TYK23842.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]2.7e-5451.06Show/hide
Query:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR-------
        +APQL H NDH L+ RA GS+WRDQFCV RSAT+VV+QYRYMF+LLQ DQII EPYK V+D LPNFC + QD W T+SPLICF+IG+WH PDR       
Subjt:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR-------

Query:  -----------------------------------------------RSSNSSLRDVANDADQVFTICNNNASYMEELHYMYDIPIAPPPVSRHRGRARA
                                                       RS+N+ LRDV ND  QV  ICNNN  YME++H +YD+PI PPPV  HR R R 
Subjt:  -----------------------------------------------RSSNSSLRDVANDADQVFTICNNNASYMEELHYMYDIPIAPPPVSRHRGRARA

Query:  EEDEFDAVDHNVEELPPMMQTQMQSHTDYASLMMM
        EE E D V HNVEE+PP   TQ QS T Y S M M
Subjt:  EEDEFDAVDHNVEELPPMMQTQMQSHTDYASLMMM

TrEMBL top hitse value%identityAlignment
A0A5A7TBF8 Mediator of RNA polymerase II transcription subunit 12-like isoform X11.3e-5456.67Show/hide
Query:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIG--------------
        +APQL H N+H L  RA GS+W+DQFCVTR ATHVVSQYRYMF+LLQ DQII EPYK V+  LPNFC + QDIW T+SPLICFHIG              
Subjt:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIG--------------

Query:  -KWH--------------LPDRRSSNSSLRDVANDADQVFTICNNNASYMEELHYMYDIPIAPPPVSRHRGRARAEEDEFDAVDHNVEELPPMMQTQMQS
          W+              +   RS+N+ LRDVA+D  QV  ICNNN  YMEE+H MYD+ I PPPV  HRGR R EE E D V HNVEE+PP   TQ QS
Subjt:  -KWH--------------LPDRRSSNSSLRDVANDADQVFTICNNNASYMEELHYMYDIPIAPPPVSRHRGRARAEEDEFDAVDHNVEELPPMMQTQMQS

Query:  HTDYASLMMM
         T Y S M M
Subjt:  HTDYASLMMM

A0A5A7UKC7 Serine/threonine-protein phosphatase 7 long form-like protein3.0e-5147.11Show/hide
Query:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR-------
        +APQL HVN +QL  RAYGS+WRDQFCVTRSATHVVSQYRYMF+LLQP QI+ EPYK V+D+LP+FCT+  +IW T+SPLICF+IG+WH PDR       
Subjt:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR-------

Query:  ------------------------------------------------------RSSNSSLRDVANDADQVFTICNNNASYMEELHYMYDIPIAPPPVSR
                                                              RS+N  L +VA+D  QV  ICNNN  YME +HYMYD+PI P PV R
Subjt:  ------------------------------------------------------RSSNSSLRDVANDADQVFTICNNNASYMEELHYMYDIPIAPPPVSR

Query:  HRGRARAEEDEFDAVDHNVEELPPMMQTQMQSHTDYASLMMM
         R   + E D+ + VD + EE+PPM  TQ +S  +Y S +MM
Subjt:  HRGRARAEEDEFDAVDHNVEELPPMMQTQMQSHTDYASLMMM

A0A5A7VIP6 Mediator of RNA polymerase II transcription subunit 12-like isoform X16.3e-4942.75Show/hide
Query:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR-------
        +APQL HVN +QL  RAYGS+WRDQFCVTRSATHVVSQYRYMF+LLQP QI+ EPYK V+D+LP+FCT+  +IW T+SPLICF+IG+WH PDR       
Subjt:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR-------

Query:  ---------------------------------------------------------------------------------RSSNSSLRDVANDADQVFT
                                                                                         RS+N  LR+VA+D  QV  
Subjt:  ---------------------------------------------------------------------------------RSSNSSLRDVANDADQVFT

Query:  ICNNNASYMEELHYMYDIPIAPPPVSRHRGRARAEEDEFDAVDHNVEELPPMMQTQMQSHTDYASLMMM
        ICN+N  YME +HYMYD+PI P PV R R   + E D+ + VD + EE+PPM  TQ QS  +Y S +MM
Subjt:  ICNNNASYMEELHYMYDIPIAPPPVSRHRGRARAEEDEFDAVDHNVEELPPMMQTQMQSHTDYASLMMM

A0A5D3BAB0 Serine/threonine-protein phosphatase 7 long form-like protein1.8e-4842.38Show/hide
Query:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR-------
        +APQL HVN +QL  RAYGS+WRDQFCVTRSATHVVSQYRYMF+LLQP QI+ EPYK V+D+LP+FCT+  +IW T+SPLICF+IG+WH PDR       
Subjt:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR-------

Query:  ---------------------------------------------------------------------------------RSSNSSLRDVANDADQVFT
                                                                                         RS+N  LR+VA+D  QV  
Subjt:  ---------------------------------------------------------------------------------RSSNSSLRDVANDADQVFT

Query:  ICNNNASYMEELHYMYDIPIAPPPVSRHRGRARAEEDEFDAVDHNVEELPPMMQTQMQSHTDYASLMMM
        ICN+N  YME +HYMYD+PI P PV R R   + E D+ + VD + +E+PPM  TQ QS  +Y S +MM
Subjt:  ICNNNASYMEELHYMYDIPIAPPPVSRHRGRARAEEDEFDAVDHNVEELPPMMQTQMQSHTDYASLMMM

A0A5D3DJV7 Serine/threonine-protein phosphatase 7 long form-like protein1.3e-5451.06Show/hide
Query:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR-------
        +APQL H NDH L+ RA GS+WRDQFCV RSAT+VV+QYRYMF+LLQ DQII EPYK V+D LPNFC + QD W T+SPLICF+IG+WH PDR       
Subjt:  MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR-------

Query:  -----------------------------------------------RSSNSSLRDVANDADQVFTICNNNASYMEELHYMYDIPIAPPPVSRHRGRARA
                                                       RS+N+ LRDV ND  QV  ICNNN  YME++H +YD+PI PPPV  HR R R 
Subjt:  -----------------------------------------------RSSNSSLRDVANDADQVFTICNNNASYMEELHYMYDIPIAPPPVSRHRGRARA

Query:  EEDEFDAVDHNVEELPPMMQTQMQSHTDYASLMMM
        EE E D V HNVEE+PP   TQ QS T Y S M M
Subjt:  EEDEFDAVDHNVEELPPMMQTQMQSHTDYASLMMM

SwissProt top hitse value%identityAlignment
Q9LNG5 Serine/threonine-protein phosphatase 7 long form homolog1.8e-0834.21Show/hide
Query:  GSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKA-VMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR
        G +WR       +    +  YR  F+  + +Q+I +PY   ++  +P  C S ++IW T++PLICF + +WH PDR
Subjt:  GSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKA-VMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR

Arabidopsis top hitse value%identityAlignment
AT1G48120.1 hydrolases;protein serine/threonine phosphatases1.3e-0934.21Show/hide
Query:  GSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKA-VMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR
        G +WR       +    +  YR  F+  + +Q+I +PY   ++  +P  C S ++IW T++PLICF + +WH PDR
Subjt:  GSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKA-VMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCACAACTCCGACATGTCAACGATCATCAATTAGCAGAACGAGCCTACGGTTCTCAGTGGAGAGACCAATTTTGTGTAACTCGGTCAGCTACACATGTAGTGAG
TCAGTATAGATATATGTTTAATCTGCTTCAACCTGACCAGATTATTTGCGAGCCTTACAAAGCTGTTATGGACACTTTGCCCAATTTTTGTACGAGCAGTCAAGACATAT
GGCTGACGATGAGCCCACTCATATGTTTTCACATTGGTAAATGGCATCTTCCTGACAGGAGATCGAGCAATAGTAGTCTTCGTGATGTTGCAAATGATGCAGATCAAGTA
TTTACTATATGCAATAATAACGCAAGTTATATGGAGGAATTACACTACATGTACGATATACCTATTGCACCTCCACCAGTTTCTAGGCATAGGGGACGTGCTCGAGCAGA
AGAAGATGAGTTTGATGCGGTTGACCATAATGTGGAAGAATTGCCTCCTATGATGCAGACGCAAATGCAGAGCCACACTGATTATGCCAGTCTGATGATGATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCACAACTCCGACATGTCAACGATCATCAATTAGCAGAACGAGCCTACGGTTCTCAGTGGAGAGACCAATTTTGTGTAACTCGGTCAGCTACACATGTAGTGAG
TCAGTATAGATATATGTTTAATCTGCTTCAACCTGACCAGATTATTTGCGAGCCTTACAAAGCTGTTATGGACACTTTGCCCAATTTTTGTACGAGCAGTCAAGACATAT
GGCTGACGATGAGCCCACTCATATGTTTTCACATTGGTAAATGGCATCTTCCTGACAGGAGATCGAGCAATAGTAGTCTTCGTGATGTTGCAAATGATGCAGATCAAGTA
TTTACTATATGCAATAATAACGCAAGTTATATGGAGGAATTACACTACATGTACGATATACCTATTGCACCTCCACCAGTTTCTAGGCATAGGGGACGTGCTCGAGCAGA
AGAAGATGAGTTTGATGCGGTTGACCATAATGTGGAAGAATTGCCTCCTATGATGCAGACGCAAATGCAGAGCCACACTGATTATGCCAGTCTGATGATGATGTAA
Protein sequenceShow/hide protein sequence
MAPQLRHVNDHQLAERAYGSQWRDQFCVTRSATHVVSQYRYMFNLLQPDQIICEPYKAVMDTLPNFCTSSQDIWLTMSPLICFHIGKWHLPDRRSSNSSLRDVANDADQV
FTICNNNASYMEELHYMYDIPIAPPPVSRHRGRARAEEDEFDAVDHNVEELPPMMQTQMQSHTDYASLMMM