; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc09G18780 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G18780
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS-protein homolog
Genome locationClcChr09:31449345..31449791
RNA-Seq ExpressionClc09G18780
SyntenyClc09G18780
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646231.1 hypothetical protein Csa_023825, partial [Cucumis sativus]3.0e-5179.31Show/hide
Query:  LEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYL
        LEKW IHVVN LSNGQILL HCKSKDNDLGE +L  G+EFNWRF+VNFWNTTLFWCYLQKPNG H SFE+FWIES SVWLY MC++ NCIW AKDDGIYL
Subjt:  LEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYL

Query:  RDN-TNQKDVLIHKWE
        +DN    KD+LIHKWE
Subjt:  RDN-TNQKDVLIHKWE

XP_022143772.1 S-protein homolog 74-like [Momordica charantia]6.6e-5163.09Show/hide
Query:  MMKQMETRCMKRQCVVLLVLLCLAVLEETEA-AELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHL
        M + M  R  K+  +V L++L L +LE  EA +EL+KWQIHVVN LSNGQ L VHCKSKDNDLGEH L+ G+EFNW F+VN WNTTLFWCYL KP+G   
Subjt:  MMKQMETRCMKRQCVVLLVLLCLAVLEETEA-AELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHL

Query:  SFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKWE
        SF+ FW+E  S+WL+  CY SNCIW AKDDGIYLRDN  Q+D+L+H+W+
Subjt:  SFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKWE

XP_031745090.1 S-protein homolog 1-like [Cucumis sativus]1.3e-6276.51Show/hide
Query:  MMKQMETRCMKRQCVVLLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLS
        M KQ+E   MK+QCVVLL +LCLA+LEET+A ELEKW IHVVN LSNGQILL HCKSKDNDLGE +L  G+EFNWRF+VNFWNTTLFWCYLQKPNG H S
Subjt:  MMKQMETRCMKRQCVVLLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLS

Query:  FEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDN-TNQKDVLIHKWE
        FE+FWIES SVWLY MC++ NCIW AKDDGIYL+DN    KD+LIHKWE
Subjt:  FEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDN-TNQKDVLIHKWE

XP_038896421.1 S-protein homolog 1-like [Benincasa hispida]3.9e-5169.59Show/hide
Query:  MMKQMETRCMKRQCVVLLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLS
        M KQME    K+QCVVLL  L L + EET+AAEL KWQIHVVN LS+GQIL VHCKSKD+DLGEHKLSVG+EFNW F+              KPN  H S
Subjt:  MMKQMETRCMKRQCVVLLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLS

Query:  FEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKWE
        FEAFWIES SVWLY+MCYDSNCIW AKDDGIYL+DNT Q+D+LIHKWE
Subjt:  FEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKWE

XP_038896594.1 S-protein homolog 1-like [Benincasa hispida]5.4e-6983.33Show/hide
Query:  METRCMKRQCVVLLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAF
        ME RCM +QCVVL  +LCLA+L+E +AAEL KWQIHVVN LSNGQIL VHCKSKDNDLGEHKLSVG+EFNWRF+VNFWNTTLFWCYLQKPN  H SF+AF
Subjt:  METRCMKRQCVVLLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAF

Query:  WIESTSVWLYDMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKWE
        WIESTSVWLY+MCYDSNCIWIAKDDG+YL+DNTN +DVLIHKWE
Subjt:  WIESTSVWLYDMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKWE

TrEMBL top hitse value%identityAlignment
A0A1S4E390 S-protein homolog2.4e-4659.86Show/hide
Query:  QMET-RCMKRQCVV--LLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLS
        ++ET R MK   +V   L +L LA+++ T+A  LE+W IH+VN LSN Q L VHC+SKD+DLG+  LSVG+EFNW FK+NFW+TTLFWCYLQKPN   +S
Subjt:  QMET-RCMKRQCVV--LLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLS

Query:  FEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKW
        FEAFW+E  S+WL+  C+ SNCIW AKDDGIYL+DN   +D L+H W
Subjt:  FEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKW

A0A6J1CPR8 S-protein homolog4.3e-4864.66Show/hide
Query:  VVLLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWLY
        +V L +  LA++E+ EA  L KWQIHV N LSN Q+L VHCKSK++DLGEH LSVG+EFNWRF+VN W+TTL+WCYLQKPNG  +SF+AFW+E  S+WLY
Subjt:  VVLLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWLY

Query:  DMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKW
          C +SNC W AKDDGIYLR+N + +DV +HKW
Subjt:  DMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKW

A0A6J1CQH6 S-protein homolog5.3e-4656.94Show/hide
Query:  METRCMKRQCVVLLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAF
        M  R +K+  +V+L+ L LA++E   + EL++W IHVVN L NG++L VHCKS+D+DLGE  L  G+EF+W F+VN  +TTLFWC+L+KP+   +SF+AF
Subjt:  METRCMKRQCVVLLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAF

Query:  WIESTSVWLYDMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKWE
        W+E TS+WL+  CYD+NCIW AKDDG+YLRDN  Q+DVL+HKW+
Subjt:  WIESTSVWLYDMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKWE

A0A6J1CRU0 S-protein homolog3.2e-5163.09Show/hide
Query:  MMKQMETRCMKRQCVVLLVLLCLAVLEETEA-AELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHL
        M + M  R  K+  +V L++L L +LE  EA +EL+KWQIHVVN LSNGQ L VHCKSKDNDLGEH L+ G+EFNW F+VN WNTTLFWCYL KP+G   
Subjt:  MMKQMETRCMKRQCVVLLVLLCLAVLEETEA-AELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHL

Query:  SFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKWE
        SF+ FW+E  S+WL+  CY SNCIW AKDDGIYLRDN  Q+D+L+H+W+
Subjt:  SFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKWE

A0A6J1HAC3 S-protein homolog8.2e-3951.72Show/hide
Query:  QMETRCMKRQCVVLLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEA
        +M    +K Q +V LV   LA+     +    KW+IH+ N LSNGQ + VHCKSKDNDLGEH L+ G+EF W FKVNFW+TTLFWCYL+KPNG  ++F+A
Subjt:  QMETRCMKRQCVVLLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEA

Query:  FWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKWE
        FW+E  + WL   C  + C W A+D+GIYL+DN+   D  +H W+
Subjt:  FWIESTSVWLYDMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKWE

SwissProt top hitse value%identityAlignment
F2Q9V4 S-protein homolog 61.8e-1132.61Show/hide
Query:  VVLLVLL-CLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWL
        +VL+ L+ C  +  + +   ++     VV +  N  +L VHCKS+D+D G H L  G  + W F VNF N+TL++C           F    ++     +
Subjt:  VVLLVLL-CLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWL

Query:  YDMCYDS----NCIWIAKDDGIYLRDNTNQKDVLIHKW
        Y    DS    NC W AK+DGIY      +K+ L +KW
Subjt:  YDMCYDS----NCIWIAKDDGIYLRDNTNQKDVLIHKW

F4JLS0 S-protein homolog 11.0e-2544.83Show/hide
Query:  ELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIY
        ++ +WQ+ VVN L+ G+ L +HCKSK++DLGE  L   + F+W F  N  ++T FWCY+ K NG H++   FW     V L+  C   NCIW AK DG+Y
Subjt:  ELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIY

Query:  LRDNTNQKDVLIHKWE
        L ++ + +DVL  KWE
Subjt:  LRDNTNQKDVLIHKWE

P0DN92 S-protein homolog 246.3e-1232.84Show/hide
Query:  VVLLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILL-VHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWL
        +V++ L+C   L+  EA E  +  +  V   ++   LL +HCKS+D+DLG H L+ G  F W+F VNF  +TL++C   +       FE +         
Subjt:  VVLLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILL-VHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWL

Query:  YDMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKW
         D    +NC W A+ DGIY       K  L + W
Subjt:  YDMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKW

Q2HQ46 S-protein homolog 742.5e-2442.24Show/hide
Query:  ELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIY
        ++ +WQ+ V N L+ G+ L +HCKSK+NDLG+  L     F+W F  N  ++TLFWCY+ K +G H++ + FW     V L+  C   NC+W AK+DG+Y
Subjt:  ELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIY

Query:  LRDNTNQKDVLIHKWE
        L ++   +DVL  KW+
Subjt:  LRDNTNQKDVLIHKWE

Q9LW22 S-protein homolog 212.4e-1138.1Show/hide
Query:  EKWQIHVVNWLS--NGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIY
        +K  I V N L+  N  IL VHCKSK+ND+G   L +G   ++ FK NFW TT FWC L K             ++  ++  D    S+  W+A+DDGIY
Subjt:  EKWQIHVVNWLS--NGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIY

Query:  LRDNT
           ++
Subjt:  LRDNT

Arabidopsis top hitse value%identityAlignment
AT3G26880.1 Plant self-incompatibility protein S1 family1.7e-1238.1Show/hide
Query:  EKWQIHVVNWLS--NGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIY
        +K  I V N L+  N  IL VHCKSK+ND+G   L +G   ++ FK NFW TT FWC L K             ++  ++  D    S+  W+A+DDGIY
Subjt:  EKWQIHVVNWLS--NGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIY

Query:  LRDNT
           ++
Subjt:  LRDNT

AT4G16295.1 S-protein homologue 17.1e-2744.83Show/hide
Query:  ELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIY
        ++ +WQ+ VVN L+ G+ L +HCKSK++DLGE  L   + F+W F  N  ++T FWCY+ K NG H++   FW     V L+  C   NCIW AK DG+Y
Subjt:  ELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIY

Query:  LRDNTNQKDVLIHKWE
        L ++ + +DVL  KWE
Subjt:  LRDNTNQKDVLIHKWE

AT4G29035.1 Plant self-incompatibility protein S1 family1.8e-2542.24Show/hide
Query:  ELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIY
        ++ +WQ+ V N L+ G+ L +HCKSK+NDLG+  L     F+W F  N  ++TLFWCY+ K +G H++ + FW     V L+  C   NC+W AK+DG+Y
Subjt:  ELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIY

Query:  LRDNTNQKDVLIHKWE
        L ++   +DVL  KW+
Subjt:  LRDNTNQKDVLIHKWE

AT5G04347.1 Plant self-incompatibility protein S1 family5.0e-1243.18Show/hide
Query:  NGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQK-PN-GLHLSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIY
        N ++L V C+SKD++LG+H L VG      F  N W  TLFWC L K P+  LH++F+A+     S W  D+      +WIA++DGIY
Subjt:  NGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQK-PN-GLHLSFEAFWIESTSVWLYDMCYDSNCIWIAKDDGIY

AT5G04350.1 Plant self-incompatibility protein S1 family3.1e-1436.44Show/hide
Query:  LLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYL-QKPN-GLHLSFEAFWIESTSVWLY
        +++ LC+ V       E+ + ++ + N L + ++L VHC+SKD+DLGEH L +G ++ + F  N W TT F C + Q PN   HL F A+    TS   +
Subjt:  LLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYL-QKPN-GLHLSFEAFWIESTSVWLY

Query:  DMCYDSNCIWIAKDDGIY
            +++C WI ++DGIY
Subjt:  DMCYDSNCIWIAKDDGIY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAGCAAATGGAAACGAGATGTATGAAAAGGCAGTGTGTGGTGTTGTTGGTATTGTTGTGTTTGGCAGTGCTTGAAGAAACCGAAGCTGCGGAGCTTGAAAAATG
GCAGATCCATGTTGTGAACTGGCTAAGCAATGGCCAAATCCTGTTGGTTCATTGCAAATCCAAAGACAATGATTTAGGAGAACACAAGCTTAGTGTTGGATCTGAATTCA
ATTGGAGATTTAAAGTAAACTTTTGGAATACCACATTGTTTTGGTGTTACTTGCAGAAGCCGAATGGACTACATTTGTCATTCGAAGCCTTTTGGATTGAGAGCACATCG
GTTTGGCTCTATGATATGTGCTACGATTCTAACTGCATTTGGATAGCTAAAGATGACGGAATTTATTTGAGGGACAACACTAATCAAAAAGATGTTTTGATTCATAAGTG
GGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGATGAAGCAAATGGAAACGAGATGTATGAAAAGGCAGTGTGTGGTGTTGTTGGTATTGTTGTGTTTGGCAGTGCTTGAAGAAACCGAAGCTGCGGAGCTTGAAAAATG
GCAGATCCATGTTGTGAACTGGCTAAGCAATGGCCAAATCCTGTTGGTTCATTGCAAATCCAAAGACAATGATTTAGGAGAACACAAGCTTAGTGTTGGATCTGAATTCA
ATTGGAGATTTAAAGTAAACTTTTGGAATACCACATTGTTTTGGTGTTACTTGCAGAAGCCGAATGGACTACATTTGTCATTCGAAGCCTTTTGGATTGAGAGCACATCG
GTTTGGCTCTATGATATGTGCTACGATTCTAACTGCATTTGGATAGCTAAAGATGACGGAATTTATTTGAGGGACAACACTAATCAAAAAGATGTTTTGATTCATAAGTG
GGAATAA
Protein sequenceShow/hide protein sequence
MMKQMETRCMKRQCVVLLVLLCLAVLEETEAAELEKWQIHVVNWLSNGQILLVHCKSKDNDLGEHKLSVGSEFNWRFKVNFWNTTLFWCYLQKPNGLHLSFEAFWIESTS
VWLYDMCYDSNCIWIAKDDGIYLRDNTNQKDVLIHKWE