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Clc09G19010 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G19010
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr09:31849457..31851444
RNA-Seq ExpressionClc09G19010
SyntenyClc09G19010
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_027155580.1 uncharacterized protein LOC113755918, partial [Coffea eugenioides]5.6e-3057.14Show/hide
Query:  APLNTRDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMT
        AP   R+L+ PNV+QQPLCIT+  T   FELKS LIHLLP+F     EDPHKHLKEFH+VC  M+P GVT++ + L+AF FSL D AKD L++    S+T
Subjt:  APLNTRDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMT

Query:  TWKEMKRQLRSQ
        TW+E+KR+ R +
Subjt:  TWKEMKRQLRSQ

XP_027155583.1 uncharacterized protein LOC113755921, partial [Coffea eugenioides]5.6e-3057.14Show/hide
Query:  APLNTRDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMT
        AP   R+L+ PNV+QQPLCIT+  T   FELKS LIHLLP+F     EDPHKHLKEFH+VC  M+P GVT++ + L+AF FSL D AKD L++    S+T
Subjt:  APLNTRDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMT

Query:  TWKEMKRQLRSQ
        TW+E+KR+ R +
Subjt:  TWKEMKRQLRSQ

XP_027169579.1 uncharacterized protein LOC113769319 [Coffea eugenioides]9.6e-3063.11Show/hide
Query:  RDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMTTWKEM
        R+L+ PNV+QQPLCITY  T   FELKS LIHLLP+F     EDPHKHLKEFH+VC  MRP GVT+EQ+ L+AF FSL D AKD L++    S+TTW+ +
Subjt:  RDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMTTWKEM

Query:  KRQ
        KRQ
Subjt:  KRQ

XP_027182241.1 uncharacterized protein LOC113780659 [Coffea eugenioides]5.6e-3057.14Show/hide
Query:  APLNTRDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMT
        AP   R+L+ PNV+QQPLCIT+  T   FELKS LIHLLP+F     EDPHKHLKEFH+VC  M+P GVT++ + L+AF FSL D AKD L++    S+T
Subjt:  APLNTRDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMT

Query:  TWKEMKRQLRSQ
        TW+E+KR+ R +
Subjt:  TWKEMKRQLRSQ

XP_027183940.1 uncharacterized protein LOC113782235 [Coffea eugenioides]7.4e-3059.26Show/hide
Query:  APLNTRDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMT
        AP   R+L+ PNV+QQPLCIT+  T   FELKS LIHLLP+F     EDPHKHLKEFH+VC  MRP GVT++ + L+AF FSL D AKD L++  + S+T
Subjt:  APLNTRDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMT

Query:  TWKEMKRQ
        TW+E+KR+
Subjt:  TWKEMKRQ

TrEMBL top hitse value%identityAlignment
A0A6J1DRS5 uncharacterized protein LOC1110232486.1e-3060.78Show/hide
Query:  RDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMTTWKEM
        + L+AP+++QQPLCIT+     +FELKS LIHLLP F  C  EDPHKHLKEFHIVC  M+P+GV ++Q+NL+AF FSL+D AKD LY+    S+TTW +M
Subjt:  RDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMTTWKEM

Query:  KR
        KR
Subjt:  KR

A0A6P6SE77 uncharacterized protein LOC1136906451.8e-2958.33Show/hide
Query:  APLNTRDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMT
        AP   R+L+ PNV+QQPLCIT+  T   FELKS LIHLLP+F     EDPHKHLKEFH+VC  M+P GVT++ + L+AF FSL D AKD L++    S+T
Subjt:  APLNTRDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMT

Query:  TWKEMKRQ
        TW+E+KR+
Subjt:  TWKEMKRQ

A0A6P6TGH5 uncharacterized protein LOC1137009131.0e-2963.11Show/hide
Query:  RDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMTTWKEM
        R+L+ PNV+QQPLCITYT T   FELKS LIHLLP+F     EDPHKHLKEFH+VC  MRP GVT+EQ+ L AF FSL + AKD L++    S+TTW+ +
Subjt:  RDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMTTWKEM

Query:  KRQ
        KRQ
Subjt:  KRQ

A0A6P6U7T0 uncharacterized protein LOC1137083981.8e-2958.33Show/hide
Query:  APLNTRDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMT
        AP   R+L+ PNV+QQPLCIT+  T   FELKS LIHLLP+F     EDPHKHLKEFH+VC  M+P GVT++ + L+AF FSL D AKD L++    S+T
Subjt:  APLNTRDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMT

Query:  TWKEMKRQ
        TW+E+KR+
Subjt:  TWKEMKRQ

A0A6P6X3G8 uncharacterized protein LOC1137392414.6e-3063.11Show/hide
Query:  RDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMTTWKEM
        R+L+ PNV+QQPLCITY  T   FELKS LIHLLP+F     EDPHKHLKEFH+VC  MRP GVT+EQ+ L+AF FSL D AKD L++    S+TTW+ +
Subjt:  RDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMTTWKEM

Query:  KRQ
        KRQ
Subjt:  KRQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCTACGAAGCTCCGCTTAATACAAGGGACCTCTCAGCCCCTAATGTTGATCAGCAGCCCCTCTGCATTACCTATACCACCACGACAGGGAATTTTGAACTAAAATC
GAGCTTAATCCACTTACTTCCCTCTTTCTCTAGTTGTACAAGTGAAGATCCACATAAGCACTTGAAGGAATTCCACATCGTGTGTGATGGCATGCGCCCCTACGGTGTAA
CGAAGGAGCAGATGAACCTCAAGGCCTTCCTGTTCTCATTGGAGGACGATGCCAAGGATTGTCTCTATTTCTTTCTTGTCGATTCCATGACCACATGGAAGGAAATGAAG
AGACAACTCCGATCACAAACACGCGTAGATCTCTGTCGACGCTGTGGAGCTATACCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCTACGAAGCTCCGCTTAATACAAGGGACCTCTCAGCCCCTAATGTTGATCAGCAGCCCCTCTGCATTACCTATACCACCACGACAGGGAATTTTGAACTAAAATC
GAGCTTAATCCACTTACTTCCCTCTTTCTCTAGTTGTACAAGTGAAGATCCACATAAGCACTTGAAGGAATTCCACATCGTGTGTGATGGCATGCGCCCCTACGGTGTAA
CGAAGGAGCAGATGAACCTCAAGGCCTTCCTGTTCTCATTGGAGGACGATGCCAAGGATTGTCTCTATTTCTTTCTTGTCGATTCCATGACCACATGGAAGGAAATGAAG
AGACAACTCCGATCACAAACACGCGTAGATCTCTGTCGACGCTGTGGAGCTATACCCTAG
Protein sequenceShow/hide protein sequence
MCYEAPLNTRDLSAPNVDQQPLCITYTTTTGNFELKSSLIHLLPSFSSCTSEDPHKHLKEFHIVCDGMRPYGVTKEQMNLKAFLFSLEDDAKDCLYFFLVDSMTTWKEMK
RQLRSQTRVDLCRRCGAIP