CuGenDBv2

Gene ID	Clc09G19067
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Genome location	ClcChr09:32001553..32002823
RNA-Seq Expression	Clc09G19067
Synteny	Clc09G19067
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0022900 - electron transport chain (biological process) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR001280 - Photosystem I PsaA/PsaB IPR006243 - Photosystem I PsaA IPR036408 - Photosystem I PsaA/PsaB superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

YP_009447450.1 photosystem I P700 chlorophyll a apoprotein A1 [Cucurbita maxima]

4.1e-69

93.57

Show/hide

Query:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
        MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM ALGRPQD+FSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
Subjt:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG

Query:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV
        GDLVAV GKVALLPIPLGT DFLVHHIHAFTIHVT+ +++
Subjt:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV

YP_009447535.1 photosystem I P700 chlorophyll a apoprotein A1 [Cucurbita moschata]

4.1e-69

93.57

Show/hide

Query:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
        MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM ALGRPQD+FSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
Subjt:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG

Query:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV
        GDLVAV GKVALLPIPLGT DFLVHHIHAFTIHVT+ +++
Subjt:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV

YP_009751738.1 photosystem I P700 apoprotein A1 [Herpetospermum pedunculosum]

4.1e-69

93.57

Show/hide

Query:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
        MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM ALGRPQD+FSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
Subjt:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG

Query:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV
        GDLVAV GKVALLPIPLGT DFLVHHIHAFTIHVT+ +++
Subjt:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV

YP_009752243.1 photosystem I P700 apoprotein A1 [Trichosanthes baviensis]

4.1e-69

93.57

Show/hide

Query:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
        MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM ALGRPQD+FSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
Subjt:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG

Query:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV
        GDLVAV GKVALLPIPLGT DFLVHHIHAFTIHVT+ +++
Subjt:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV

YP_009753174.1 photosystem I P700 apoprotein A1 [Trichosanthes truncata]

4.1e-69

93.57

Show/hide

Query:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
        MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM ALGRPQD+FSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
Subjt:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG

Query:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV
        GDLVAV GKVALLPIPLGT DFLVHHIHAFTIHVT+ +++
Subjt:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LDX9 Photosystem I P700 chlorophyll a apoprotein A1

2.0e-69

93.57

Show/hide

Query:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
        MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM ALGRPQD+FSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
Subjt:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG

Query:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV
        GDLVAV GKVALLPIPLGT DFLVHHIHAFTIHVT+ +++
Subjt:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV

A0A2Z2CGB0 Photosystem I P700 chlorophyll a apoprotein A1

2.0e-69

93.57

Show/hide

Query:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
        MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM ALGRPQD+FSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
Subjt:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG

Query:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV
        GDLVAV GKVALLPIPLGT DFLVHHIHAFTIHVT+ +++
Subjt:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV

A0A410HF85 Photosystem I P700 chlorophyll a apoprotein A1

2.0e-69

93.57

Show/hide

Query:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
        MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM ALGRPQD+FSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
Subjt:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG

Query:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV
        GDLVAV GKVALLPIPLGT DFLVHHIHAFTIHVT+ +++
Subjt:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV

A0A6M3RWM8 Photosystem I P700 chlorophyll a apoprotein A1

2.0e-69

93.57

Show/hide

Query:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
        MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM ALGRPQD+FSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
Subjt:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG

Query:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV
        GDLVAV GKVALLPIPLGT DFLVHHIHAFTIHVT+ +++
Subjt:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV

X2F5B1 Photosystem I P700 chlorophyll a apoprotein A1

2.0e-69

93.57

Show/hide

Query:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
        MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM ALGRPQD+FSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
Subjt:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG

Query:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV
        GDLVAV GKVALLPIPLGT DFLVHHIHAFTIHVT+ +++
Subjt:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV

SwissProt top hits

e value

%identity

Alignment

P58310 Photosystem I P700 chlorophyll a apoprotein A1

1.0e-70

91.43

Show/hide

Query:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
        MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM ALGRPQD+FSDTAIQLQP+FAQWIQNTHALAP ITAPGATTGTSLTWGG
Subjt:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG

Query:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV
        GDLVAV  KVALLPIPLGT DFLVHHIHAFTIHVT+ +++
Subjt:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV

Q09X17 Photosystem I P700 chlorophyll a apoprotein A1

3.0e-70

91.43

Show/hide

Query:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
        MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM ALGRPQD+FSDTAIQLQPVFAQWIQNTHALAP  TAPGATT TSLTWGG
Subjt:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG

Query:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV
        GDLVAV GKVALLPIPLGT DFLVHHIHAFTIHVT+ +++
Subjt:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV

Q0G9W2 Photosystem I P700 chlorophyll a apoprotein A1

3.0e-70

91.43

Show/hide

Query:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
        MVRDYDPTTRYNDLLDRVLRHRDAIISHLNW CIFLGFHSFGLYIHNDTM ALGRPQD+FSDTAIQLQPVFAQWIQNTHALAPS TAPGATT TSLTWGG
Subjt:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG

Query:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV
        GDLVAV GKVALLPIPLGT DFLVHHIHAFTIHVT+ +++
Subjt:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV

Q2QD89 Photosystem I P700 chlorophyll a apoprotein A1

2.0e-71

92.86

Show/hide

Query:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
        MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM ALGRPQD+FSDTAIQLQPVFAQWIQNTHALAP ITAPGATTGTSLTWGG
Subjt:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG

Query:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV
        GDLVAV GKVALLPIPLGT DFLVHHIHAFTIHVT+ +++
Subjt:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV

Q6EW48 Photosystem I P700 chlorophyll a apoprotein A1

1.0e-70

91.43

Show/hide

Query:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
        MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM ALGRPQD+FSDTAIQLQP+FAQWIQNTHALAPS TAPGAT GTSLTWGG
Subjt:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG

Query:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV
        GDLVAV GKVALLPIPLGT DFLVHHIHAFTIHVT+ +++
Subjt:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV

Arabidopsis top hits

e value

%identity

Alignment

ATCG00340.1 Photosystem I, PsaA/PsaB protein

9.6e-24

40.82

Show/hide

Query:  VRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTH--------ALAPSITAPGATTG
        +RDY+P    +++L R+L H++AIISHL+W  +FLGFH+ GLY+HND M A G P     +  I ++P+FAQWIQ+ H         L  S + P    G
Subjt:  VRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTH--------ALAPSITAPGATTG

Query:  TSLTWGGGDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV
         S+ W  G L A++     L + +G  DFLVHH  A  +H T  ++V
Subjt:  TSLTWGGGDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV

ATCG00350.1 Photosystem I, PsaA/PsaB protein

1.2e-69

88.57

Show/hide

Query:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG
        MVRDYDPT RYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM ALGRPQD+FSDTAIQLQPVFAQWIQNTHALAP +TAPG T  TSLTWGG
Subjt:  MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTM-ALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGG

Query:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV
        G+LVAV GKVALLPIPLGT DFLVHHIHAFTIHVT+ +++
Subjt:  GDLVAVDGKVALLPIPLGTTDFLVHHIHAFTIHVTIFLIV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTAAGAGACTATGATCCAACTACTCGCTACAACGATCTATTAGATCGTGTACTTAGGCATCGTGATGCAATCATATCACATCTGAACTGGGTGTGTATATTTTTAGG
CTTTCACAGTTTTGGTTTGTATATTCATAATGATACCATGGCTTTAGGGCGTCCCCAAGATATTTTTTCAGATACCGCTATACAATTACAACCCGTCTTTGCTCAATGGA
TACAAAACACCCATGCTTTAGCACCTAGTATAACAGCCCCCGGTGCAACAACAGGCACTAGTTTGACTTGGGGGGGTGGTGATTTAGTGGCAGTGGACGGCAAAGTTGCT
TTGTTACCTATTCCGTTAGGAACCACAGATTTTTTGGTACATCATATTCATGCATTTACGATTCATGTAACGATATTTCTAATTGTGATGTCTGAGTTTAGGAAGGATAC
ATGA

mRNA sequence

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Protein sequence

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MVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMALGRPQDIFSDTAIQLQPVFAQWIQNTHALAPSITAPGATTGTSLTWGGGDLVAVDGKVA
LLPIPLGTTDFLVHHIHAFTIHVTIFLIVMSEFRKDT

Clc09G19067 (gene) of Watermelon (cordophanus) v2 genome