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Clc09G19495 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G19495
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDExH-box ATP-dependent RNA helicase DExH5
Genome locationClcChr09:32968456..32969526
RNA-Seq ExpressionClc09G19495
SyntenyClc09G19495
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034595.1 DExH-box ATP-dependent RNA helicase DExH5 [Cucumis melo var. makuwa]5.3e-2379.45Show/hide
Query:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF
        V++PF    + KK+AAEAAKSQFS+D+SDHLA+IRAYGGWKEAERN GGYDFCWKNFL +QSMKAIDSLRKEF
Subjt:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF

TYK09146.1 DExH-box ATP-dependent RNA helicase DExH5 [Cucumis melo var. makuwa]5.3e-2379.45Show/hide
Query:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF
        V++PF    + KK+AAEAAKSQFS+D+SDHLA+IRAYGGWKEAERN GGYDFCWKNFL +QSMKAIDSLRKEF
Subjt:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF

XP_008446652.1 PREDICTED: DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1 [Cucumis melo]5.3e-2379.45Show/hide
Query:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF
        V++PF    + KK+AAEAAKSQFS+D+SDHLA+IRAYGGWKEAERN GGYDFCWKNFL +QSMKAIDSLRKEF
Subjt:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF

XP_008446653.1 PREDICTED: DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X2 [Cucumis melo]5.3e-2379.45Show/hide
Query:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF
        V++PF    + KK+AAEAAKSQFS+D+SDHLA+IRAYGGWKEAERN GGYDFCWKNFL +QSMKAIDSLRKEF
Subjt:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF

XP_038892223.1 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial [Benincasa hispida]1.2e-2279.45Show/hide
Query:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF
        V++PF    + KK+ AEAAKSQFS+D+SDHLA+IRAYGGWKEAERN GGYDFCWKNFL VQSMKAIDSLRKEF
Subjt:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF

TrEMBL top hitse value%identityAlignment
A0A1S3BF36 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X12.6e-2379.45Show/hide
Query:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF
        V++PF    + KK+AAEAAKSQFS+D+SDHLA+IRAYGGWKEAERN GGYDFCWKNFL +QSMKAIDSLRKEF
Subjt:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF

A0A1S3BFL6 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X22.6e-2379.45Show/hide
Query:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF
        V++PF    + KK+AAEAAKSQFS+D+SDHLA+IRAYGGWKEAERN GGYDFCWKNFL +QSMKAIDSLRKEF
Subjt:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF

A0A5A7SZF7 DExH-box ATP-dependent RNA helicase DExH52.6e-2379.45Show/hide
Query:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF
        V++PF    + KK+AAEAAKSQFS+D+SDHLA+IRAYGGWKEAERN GGYDFCWKNFL +QSMKAIDSLRKEF
Subjt:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF

A0A5D3CFK3 DExH-box ATP-dependent RNA helicase DExH52.6e-2379.45Show/hide
Query:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF
        V++PF    + KK+AAEAAKSQFS+D+SDHLA+IRAYGGWKEAERN GGYDFCWKNFL +QSMKAIDSLRKEF
Subjt:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF

A0A6J1JD40 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X11.3e-2279.45Show/hide
Query:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF
        V++PF    + KK+AAEAAKSQFS+D+SDHLA+IRAY GWKEAERN GGYDFCWKNFL VQSMKAIDSLRKEF
Subjt:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF

SwissProt top hitse value%identityAlignment
F4HYJ7 DExH-box ATP-dependent RNA helicase DExH39.2e-1859.46Show/hide
Query:  VQEPFQDHQDRKKNAAEAAKSQFS-KDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF
        V++PF    D KK+ AE A+S+FS +DYSDHL ++RAY GWK+AER   GYD+CWKNFL  Q++KA+DS+RK+F
Subjt:  VQEPFQDHQDRKKNAAEAAKSQFS-KDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF

F4ILR7 DExH-box ATP-dependent RNA helicase DExH17.3e-0734.25Show/hide
Query:  QEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEFV
        + PF    +RK+ A EA +       SDH+A+++AY G+++A+R     DFCW+NFL   +++ ++ +R +F+
Subjt:  QEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEFV

F4IM84 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial1.4e-2168.49Show/hide
Query:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF
        V++PF   QD KK+ AEAAKSQFS+D+SDHLA++RAY GWK+AE  S  YD+CWKNFL +QS++AIDSLRKEF
Subjt:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF

Q8VHK9 ATP-dependent DNA/RNA helicase DHX366.8e-0533.85Show/hide
Query:  KKNAAEAAKSQFSKD-YSDHLAVIRAYGGWKEAERNSGGY--DFCWKNFLYVQSMKAIDSLRKEF
        K+  A+A + + +K+  SDHL V+ A+ GW+EA+R    Y  D+CW+ FL   +++ + +++ +F
Subjt:  KKNAAEAAKSQFSKD-YSDHLAVIRAYGGWKEAERNSGGY--DFCWKNFLYVQSMKAIDSLRKEF

Q9H2U1 ATP-dependent DNA/RNA helicase DHX363.1e-0535.38Show/hide
Query:  KKNAAEAAKSQFSKD-YSDHLAVIRAYGGWKEAERNSGGY--DFCWKNFLYVQSMKAIDSLRKEF
        K+  A+A + + +KD  SDHL V+ A+ GW+EA R    Y  D+CW+ FL   +++ + +++ +F
Subjt:  KKNAAEAAKSQFSKD-YSDHLAVIRAYGGWKEAERNSGGY--DFCWKNFLYVQSMKAIDSLRKEF

Arabidopsis top hitse value%identityAlignment
AT1G48650.1 DEA(D/H)-box RNA helicase family protein6.5e-1959.46Show/hide
Query:  VQEPFQDHQDRKKNAAEAAKSQFS-KDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF
        V++PF    D KK+ AE A+S+FS +DYSDHL ++RAY GWK+AER   GYD+CWKNFL  Q++KA+DS+RK+F
Subjt:  VQEPFQDHQDRKKNAAEAAKSQFS-KDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF

AT1G48650.2 DEA(D/H)-box RNA helicase family protein6.5e-1959.46Show/hide
Query:  VQEPFQDHQDRKKNAAEAAKSQFS-KDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF
        V++PF    D KK+ AE A+S+FS +DYSDHL ++RAY GWK+AER   GYD+CWKNFL  Q++KA+DS+RK+F
Subjt:  VQEPFQDHQDRKKNAAEAAKSQFS-KDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF

AT2G01130.1 DEA(D/H)-box RNA helicase family protein9.7e-2368.49Show/hide
Query:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF
        V++PF   QD KK+ AEAAKSQFS+D+SDHLA++RAY GWK+AE  S  YD+CWKNFL +QS++AIDSLRKEF
Subjt:  VQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF

AT2G35920.1 RNA helicase family protein5.2e-0834.25Show/hide
Query:  QEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEFV
        + PF    +RK+ A EA +       SDH+A+++AY G+++A+R     DFCW+NFL   +++ ++ +R +F+
Subjt:  QEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEFV

AT5G04895.1 DEA(D/H)-box RNA helicase family protein4.7e-1754.43Show/hide
Query:  VNNSHVQEPFQDHQDRKKNAAEAAKSQFS-KDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF
        V+   V++PF   QD KK+ A +AK +FS KDYSDH+A++RA+ GWK+AER    Y+FCW+NFL  Q+++AI SLRK+F
Subjt:  VNNSHVQEPFQDHQDRKKNAAEAAKSQFS-KDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAGTAAGCTTTCCGACTCTCAACCTCAAGATGCAGAAGCATCCCTCTCTAACAAAATGATAGTAATGCAAACCTCAATGGTCGGGCTGCAGCAAGCTGTAAAAAA
ACTAACATTGGAACTGAGAAGGTTGGTCAACAATCCACCAAGAATCAACCAAGAAGCTCCTACGTTAAACCAAGAAAATCTGGACAACAGACGGCAACTTCAAGATCTTC
CGCAAAGGCAAGGAAATAACGAACAAGTCTTACCAAGAAATCAAGAAAATAACCAAGTTCTTCCAAGAAATCAAGAACATCACCATAATCTTCTGCACAATCAAGAACAA
CACTTCAATCCAGTCCAGGGCCAAGAACATGGAAACTTTAATCAAGAATTTCAAAGACGGCAAGAAGATCCACCCCGCCATTTACAAGGACTTAAAGAAAGACCAAGAGG
TCCACCAAGACCCTTCATCCAGAGAAATCAACCGGGTATGAACAATTATAATCCAATTTTTGAACAACACCACCCTCCTCATAGACCTTTTCTTCAAATGTTGGTTCATT
TTGATATTGACTCTTCTAATGAGGAAGTAAACAATCACTACTTTCAAGATTACCAAGACCCAACCGTTAATACATCAAATACCCTCCCAAGACCTCAAGATCAGGCGGTT
AATAATTCCCACGTCCAAGAACCTTTCCAAGATCACCAAGATAGAAAGAAGAATGCTGCAGAGGCTGCAAAATCCCAATTTTCAAAAGATTATAGTGATCACCTTGCTGT
GATCCGGGCCTATGGGGGATGGAAAGAAGCTGAGAGGAACTCAGGTGGATATGACTTTTGTTGGAAGAACTTCCTTTATGTACAATCGATGAAGGCTATTGATTCACTAA
GGAAGGAGTTTGTTTTCTTTGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCAGTAAGCTTTCCGACTCTCAACCTCAAGATGCAGAAGCATCCCTCTCTAACAAAATGATAGTAATGCAAACCTCAATGGTCGGGCTGCAGCAAGCTGTAAAAAA
ACTAACATTGGAACTGAGAAGGTTGGTCAACAATCCACCAAGAATCAACCAAGAAGCTCCTACGTTAAACCAAGAAAATCTGGACAACAGACGGCAACTTCAAGATCTTC
CGCAAAGGCAAGGAAATAACGAACAAGTCTTACCAAGAAATCAAGAAAATAACCAAGTTCTTCCAAGAAATCAAGAACATCACCATAATCTTCTGCACAATCAAGAACAA
CACTTCAATCCAGTCCAGGGCCAAGAACATGGAAACTTTAATCAAGAATTTCAAAGACGGCAAGAAGATCCACCCCGCCATTTACAAGGACTTAAAGAAAGACCAAGAGG
TCCACCAAGACCCTTCATCCAGAGAAATCAACCGGGTATGAACAATTATAATCCAATTTTTGAACAACACCACCCTCCTCATAGACCTTTTCTTCAAATGTTGGTTCATT
TTGATATTGACTCTTCTAATGAGGAAGTAAACAATCACTACTTTCAAGATTACCAAGACCCAACCGTTAATACATCAAATACCCTCCCAAGACCTCAAGATCAGGCGGTT
AATAATTCCCACGTCCAAGAACCTTTCCAAGATCACCAAGATAGAAAGAAGAATGCTGCAGAGGCTGCAAAATCCCAATTTTCAAAAGATTATAGTGATCACCTTGCTGT
GATCCGGGCCTATGGGGGATGGAAAGAAGCTGAGAGGAACTCAGGTGGATATGACTTTTGTTGGAAGAACTTCCTTTATGTACAATCGATGAAGGCTATTGATTCACTAA
GGAAGGAGTTTGTTTTCTTTGCTTAG
Protein sequenceShow/hide protein sequence
MASKLSDSQPQDAEASLSNKMIVMQTSMVGLQQAVKKLTLELRRLVNNPPRINQEAPTLNQENLDNRRQLQDLPQRQGNNEQVLPRNQENNQVLPRNQEHHHNLLHNQEQ
HFNPVQGQEHGNFNQEFQRRQEDPPRHLQGLKERPRGPPRPFIQRNQPGMNNYNPIFEQHHPPHRPFLQMLVHFDIDSSNEEVNNHYFQDYQDPTVNTSNTLPRPQDQAV
NNSHVQEPFQDHQDRKKNAAEAAKSQFSKDYSDHLAVIRAYGGWKEAERNSGGYDFCWKNFLYVQSMKAIDSLRKEFVFFA