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Clc09G19510 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G19510
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationClcChr09:33001773..33019808
RNA-Seq ExpressionClc09G19510
SyntenyClc09G19510
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ETO80384.1 hypothetical protein F444_05107, partial [Phytophthora parasitica P1976]6.7e-0436.59Show/hide
Query:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLLHGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYRI
        RRLLAAAL +   K++GR + Q    P+   R+++ L LR   +  R +++Q++VRL   +H      V+L    HL Q L  +RL HL      AV   
Subjt:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLLHGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYRI

Query:  DSFLHHLRQEMDVTVHGVIDDED
        D+ L  L +  DV + GV+DD D
Subjt:  DSFLHHLRQEMDVTVHGVIDDED

GER56671.1 DNA-directed RNA polymerase subunit beta' [Striga asiatica]1.9e-0634.81Show/hide
Query:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLL-HGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYR
        + ++   L    +KE  R + + L+LP++   IK+ LHLR H S+PRR+ +QE +R   +    +H   +VL R  HL++ + R+RLRH  Q   D V+ 
Subjt:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLL-HGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYR

Query:  IDSFLHHLRQEMDVTVHGVIDDEDPEISGDFSGSG
        + S LH   Q + V VH         +S  F GSG
Subjt:  IDSFLHHLRQEMDVTVHGVIDDEDPEISGDFSGSG

TrEMBL top hitse value%identityAlignment
A0A081ANC3 Uncharacterized protein (Fragment)3.2e-0436.59Show/hide
Query:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLLHGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYRI
        RRLLAAAL +   K++GR + Q    P+   R+++ L LR   +  R +++Q++VRL   +H      V+L    HL Q L  +RL HL      AV   
Subjt:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLLHGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYRI

Query:  DSFLHHLRQEMDVTVHGVIDDED
        D+ L  L +  DV + GV+DD D
Subjt:  DSFLHHLRQEMDVTVHGVIDDED

A0A5A7RHP5 DNA-directed RNA polymerase subunit beta9.1e-0734.81Show/hide
Query:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLL-HGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYR
        + ++   L    +KE  R + + L+LP++   IK+ LHLR H S+PRR+ +QE +R   +    +H   +VL R  HL++ + R+RLRH  Q   D V+ 
Subjt:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLL-HGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYR

Query:  IDSFLHHLRQEMDVTVHGVIDDEDPEISGDFSGSG
        + S LH   Q + V VH         +S  F GSG
Subjt:  IDSFLHHLRQEMDVTVHGVIDDEDPEISGDFSGSG

W2ZPM5 Uncharacterized protein (Fragment)9.4e-0435.77Show/hide
Query:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLLHGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYRI
        RRLLAAAL +   K++GR + Q    P+   R+++ L LR   +  R +++Q++VRL   +H      V+L    HL Q L  +R  HL      AV   
Subjt:  RRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLLHGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYRI

Query:  DSFLHHLRQEMDVTVHGVIDDED
        D+ L  L +  DV + GV+DD D
Subjt:  DSFLHHLRQEMDVTVHGVIDDED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAACAACTTACGCCGTCGTCTCTTGGCCGCCGCCTTGGGTTCCAGTACTAACAAAGAATCCGGCAGGAATTCCGGCCAGCCTCTGATCCTCCCAAAGATCAATCG
TCGAATCAAAAAACGACTTCATCTGCGCCGCCATGGATCCATACCTCGTCGGAAATCCAAACAAGAATCCGTCCGCCTCCACCATCTCCTCCACGGAAATCACCGGCACG
CCGTCGTCCTTCGGCGGAACTCTCATCTGCTCCAGCGTCTCCAACGGCAGCGTCTCCGGCACCTTAAACAGAACACCTTCGACGCCGTCTACAGAATCGACTCCTTTCTT
CATCATCTTCGCCAAGAGATGGACGTGACCGTACATGGAGTAATAGACGATGAAGATCCTGAGATTTCCGGAGATTTCTCCGGCAGTGGATTTTGGTTGATCGGGAGTTG
GATGTGGATCGGAGACGGCTACGGATGCTCTGTTCTTGCTAGTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAACAACTTACGCCGTCGTCTCTTGGCCGCCGCCTTGGGTTCCAGTACTAACAAAGAATCCGGCAGGAATTCCGGCCAGCCTCTGATCCTCCCAAAGATCAATCG
TCGAATCAAAAAACGACTTCATCTGCGCCGCCATGGATCCATACCTCGTCGGAAATCCAAACAAGAATCCGTCCGCCTCCACCATCTCCTCCACGGAAATCACCGGCACG
CCGTCGTCCTTCGGCGGAACTCTCATCTGCTCCAGCGTCTCCAACGGCAGCGTCTCCGGCACCTTAAACAGAACACCTTCGACGCCGTCTACAGAATCGACTCCTTTCTT
CATCATCTTCGCCAAGAGATGGACGTGACCGTACATGGAGTAATAGACGATGAAGATCCTGAGATTTCCGGAGATTTCTCCGGCAGTGGATTTTGGTTGATCGGGAGTTG
GATGTGGATCGGAGACGGCTACGGATGCTCTGTTCTTGCTAGTGAATAA
Protein sequenceShow/hide protein sequence
MGNNLRRRLLAAALGSSTNKESGRNSGQPLILPKINRRIKKRLHLRRHGSIPRRKSKQESVRLHHLLHGNHRHAVVLRRNSHLLQRLQRQRLRHLKQNTFDAVYRIDSFL
HHLRQEMDVTVHGVIDDEDPEISGDFSGSGFWLIGSWMWIGDGYGCSVLASE