; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc09G20730 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G20730
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRNA exonuclease 4
Genome locationClcChr09:34252552..34257146
RNA-Seq ExpressionClc09G20730
SyntenyClc09G20730
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013087 - Zinc finger C2H2-type
IPR013520 - Exonuclease, RNase T/DNA polymerase III
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602442.1 hypothetical protein SDJN03_07675, partial [Cucurbita argyrosperma subsp. sororia]1.4e-14774.64Show/hide
Query:  MDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRP
        MDHPSETLRHKCA CFRQFNKIEHLVEHMR+SFHS HEPTCSLCHKHCRSFESLREHLIGP PKQ+CNNIF  RGCKICLAIFESP  LR H ERCQLR 
Subjt:  MDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRP

Query:  VNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRD-AMPLK
         NS +I   F N G CDKL T +NG  +R+  EAVAL+C MVG GSDGSL  CARVCLI +NE++IFSTYV PTLP+TNYR ESTGV PEY+RD AMPLK
Subjt:  VNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRD-AMPLK

Query:  QVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMI--------------RYNMENGKKEGYEGCVATMRLYMRMKSQVHKREDY
        QVQKKIQ+ LCNGEPMWKIRPG  GKARILVGHG+ + L  L I+YP FMI              RY+++NG K+ YE CVATMRLYMRM+SQVHK E+Y
Subjt:  QVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMI--------------RYNMENGKKEGYEGCVATMRLYMRMKSQVHKREDY

Query:  PLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS
        PLASDPQNK+NFAIWKQFELE+MSP+QML++SRSDYYCWCLDS
Subjt:  PLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS

XP_011656271.2 RNA exonuclease 4 [Cucumis sativus]3.0e-14572.55Show/hide
Query:  MDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRP
        MDHP ETLRHKC GCF+QFNKIEHLVEHMRISFHS HEP CS CHKH R FESLREHLIGPLPKQ+C NIFN RGCKICLA+FESPL+L  H E CQLRP
Subjt:  MDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRP

Query:  VN-SREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLK
        +N S E   R G           E+GGTK   NEAVALSCTMVGAG DGSL+ C RVC++ QNESLIFSTYV PTLP+TNYR+E TGVRPE+LRDAMPLK
Subjt:  VN-SREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLK

Query:  QVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKK-EGYEGCVATMRL
        QVQKKIQEFLCNGE MWKIRPG+TG+ARILVGHG++E LT L IDYP  MIR                           Y+MENGK+ EGYE CVATMRL
Subjt:  QVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKK-EGYEGCVATMRL

Query:  YMRMKSQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS
        YMRMKSQVHKRE+YPLASDPQNK NFA WKQ ELEKM+PQQ+LQISRSDYYCWCLDS
Subjt:  YMRMKSQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS

XP_022961916.1 RNA exonuclease 4-like [Cucurbita moschata]4.1e-14771.91Show/hide
Query:  MDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRP
        MDHPSETLRHKCA CFRQFNKIEHLVEHMR+SFHS HEPTCSLCHKHCRSFESLREHLIGP PKQ+CNN+F  RGCKICLAIFESP  LR H ERCQLR 
Subjt:  MDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRP

Query:  VNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRD-AMPLK
         NS +I  RF N+G CDKL T +NG  +R+  EAVAL+C MVG GSDGSL  CARVCLI +NE++IFSTYV PTLP+TNYR ESTGV PEY+RD AMPLK
Subjt:  VNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRD-AMPLK

Query:  QVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLY
        QVQKKIQ+ LCNGEPMWKIRPG  GKARILVGHG+ + L  L I+YP FMIR                           Y+++NG K+ YE CVATMRLY
Subjt:  QVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLY

Query:  MRMKSQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS
        MRM+SQVHK E+YPLASDPQNK+NFAIWKQFELE+MSP+QML++SRSDYYCWCLDS
Subjt:  MRMKSQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS

XP_022990586.1 RNA exonuclease 4-like [Cucurbita maxima]1.7e-14872.75Show/hide
Query:  MDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRP
        MDHPSETLRHKCA CFRQFNKIEHLVEHMR+SFHS HEPTCSLCHKHCRSFESLREHLIGPLPKQ+CNNIF TRGCKICLAIFESP  LR H ERCQLR 
Subjt:  MDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRP

Query:  VNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRD-AMPLK
         N  +IM RF N+G CDKL T +NG  +R+  EAVAL+C MVG GSDGSL  CARVCLI + E++IFSTYV PTLP+TNYR ESTGV PEYLRD AMPLK
Subjt:  VNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRD-AMPLK

Query:  QVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLY
        QVQKKIQ+ LCNGEPMWKIRPG  GKARILVGHG+ + L  L I+YP FMIR                           Y+++NG K+ YE CVATMRLY
Subjt:  QVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLY

Query:  MRMKSQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS
        MRM++QVHK E+YPLASDPQNK+NFAIWKQFELE+MSP+QML+ISRSDYYCWCLDS
Subjt:  MRMKSQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS

XP_023543310.1 RNA exonuclease 4-like [Cucurbita pepo subsp. pepo]6.0e-14671.63Show/hide
Query:  MDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRP
        MDHPSETLRHKCA CFRQFNKIEHLVEHMR+SFHS HEPTCSLCHKHCRSFESLREHLIGPLPKQ+CNNIF TRGCKICLAIFESP  LR H ERCQLR 
Subjt:  MDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRP

Query:  VNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRD-AMPLK
         NS + M RF N+G  DKL T +NG  +R+  EAVAL+C MVG GSDGSL  CARVCLI +NE++IFSTYV PTLP+TNYR ESTGV PEY+RD AMPLK
Subjt:  VNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRD-AMPLK

Query:  QVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLY
        QV KKI++ LCNGEPMWKIRPG  GKARILVGHG+ + L  L I+YP FMIR                           Y+++N  K+ YE CVATMRLY
Subjt:  QVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLY

Query:  MRMKSQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS
        MRM+SQVHK E+YPLASDPQNK+NFAIWKQFELE+MSP+QML++SRSDYYCWCLDS
Subjt:  MRMKSQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS

TrEMBL top hitse value%identityAlignment
A0A1S3C947 RNA exonuclease 42.3e-13566.85Show/hide
Query:  MDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRP
        MDH  ET RHKCA CFRQFNKIEHLV+HMR SFHS HEPTC++C KHCRS +SLREHLIGPLPKQ+C NIF TRGCK CLAI +S    R H ERCQ  P
Subjt:  MDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRP

Query:  VNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQ
        VNS  ++ RF NLG  D    +++G T+   + A+AL+C  VG GSDGSL  CA+VCL+ + E++IF +YV+P +PVTNYR+E TGVRPE+LRDAMPLKQ
Subjt:  VNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQ

Query:  VQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKK-EGYEGCVATMRLY
        VQKKIQEFLCNGE MWKIRPG+T KARILVGHG++E LT L IDYP+ MIR                           YNMENGKK EGYE CVATMRLY
Subjt:  VQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKK-EGYEGCVATMRLY

Query:  MRMKSQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS
        ++MKSQVHKRE+YPLASDP NK NFAIWKQ ELEKM+PQQ+LQISRSDYYCWCLD+
Subjt:  MRMKSQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS

A0A2N9IYD2 C2H2-type domain-containing protein1.8e-13267.47Show/hide
Query:  NMDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLR
        N    SETLR+KCA CFRQFNK+EHLVEHMR S+HS HEP C +C KHCRSFESLREHLIGPLPKQ+C NIFN RGCK CL+I +SP     H ERC+  
Subjt:  NMDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLR

Query:  PVNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLK
         +N+  ++ RF NLG CD L +++NGGT+    + VAL+  MVG G DGSL  CARVCLI ++E++IF +YV+P +PVTNYR+E+TG+RPEYLRDAMPL+
Subjt:  PVNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLK

Query:  QVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIRYNMENGKKEGYEGCVATMRLYMRMKSQVHKREDYPLASDPQNKHNFAI
        QVQKKIQ+FLCNGEPMWKIRP   GKARILVGHG++ DL RL ++YP  MIRY+++ G ++ YE CVATMRLYM MKSQVHK EDYPLASDPQN++NFA 
Subjt:  QVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIRYNMENGKKEGYEGCVATMRLYMRMKSQVHKREDYPLASDPQNKHNFAI

Query:  WKQFELEKMSPQQMLQISRSDYYCWCLDSNPS
        W+Q ELE+M+P+QML+ISRSDYYCWCLDS  S
Subjt:  WKQFELEKMSPQQMLQISRSDYYCWCLDSNPS

A0A6J1HBP2 RNA exonuclease 42.0e-14771.91Show/hide
Query:  MDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRP
        MDHPSETLRHKCA CFRQFNKIEHLVEHMR+SFHS HEPTCSLCHKHCRSFESLREHLIGP PKQ+CNN+F  RGCKICLAIFESP  LR H ERCQLR 
Subjt:  MDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRP

Query:  VNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRD-AMPLK
         NS +I  RF N+G CDKL T +NG  +R+  EAVAL+C MVG GSDGSL  CARVCLI +NE++IFSTYV PTLP+TNYR ESTGV PEY+RD AMPLK
Subjt:  VNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRD-AMPLK

Query:  QVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLY
        QVQKKIQ+ LCNGEPMWKIRPG  GKARILVGHG+ + L  L I+YP FMIR                           Y+++NG K+ YE CVATMRLY
Subjt:  QVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLY

Query:  MRMKSQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS
        MRM+SQVHK E+YPLASDPQNK+NFAIWKQFELE+MSP+QML++SRSDYYCWCLDS
Subjt:  MRMKSQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS

A0A6J1JNC8 RNA exonuclease 48.1e-14972.75Show/hide
Query:  MDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRP
        MDHPSETLRHKCA CFRQFNKIEHLVEHMR+SFHS HEPTCSLCHKHCRSFESLREHLIGPLPKQ+CNNIF TRGCKICLAIFESP  LR H ERCQLR 
Subjt:  MDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRP

Query:  VNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRD-AMPLK
         N  +IM RF N+G CDKL T +NG  +R+  EAVAL+C MVG GSDGSL  CARVCLI + E++IFSTYV PTLP+TNYR ESTGV PEYLRD AMPLK
Subjt:  VNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRD-AMPLK

Query:  QVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLY
        QVQKKIQ+ LCNGEPMWKIRPG  GKARILVGHG+ + L  L I+YP FMIR                           Y+++NG K+ YE CVATMRLY
Subjt:  QVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLY

Query:  MRMKSQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS
        MRM++QVHK E+YPLASDPQNK+NFAIWKQFELE+MSP+QML+ISRSDYYCWCLDS
Subjt:  MRMKSQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS

W9S0J7 RNA exonuclease 41.7e-13062.89Show/hide
Query:  ETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRPVNSRE
        ETLR+KCA CFRQFNK+EHLVEHMR S+HS HEP C +C KHCRSFESLREHLIGPLPKQ+C NIF+TRGC+ CLAIF+SP  LR H +RCQL  +N   
Subjt:  ETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRPVNSRE

Query:  IMGRFGNLGNCDKLMTMENGGTKR--YENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQK
        ++GR  NLG  D L    +G + R     + VAL+C MVG GSDGSL  CARVCLI + E++IF +YV+P +PVTNYR+E+TG+RPEYLRDAMP++QVQK
Subjt:  IMGRFGNLGNCDKLMTMENGGTKR--YENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQK

Query:  KIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLYMRMK
        KIQ+FLCNGEPMWKIRP + GKARILVGHG++ DL RL ++YP+ MIR                           Y++++G ++ YE CVATMRLYMRM+
Subjt:  KIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLYMRMK

Query:  SQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDSN
        SQ H+ EDYPLASDPQN++NFA W+Q ELE+M+P+QML+ISRSDYYCWCLDSN
Subjt:  SQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDSN

SwissProt top hitse value%identityAlignment
Q6CMT3 RNA exonuclease 44.0e-1232.48Show/hide
Query:  VALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGV
        V++ C  VG G DG     ARV +++   +++   +V+P  PVT++R   +G++P ++ +A+  +  QK++   L               K RILVGH V
Subjt:  VALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGV

Query:  EEDLTRLHIDYPTFMIR
          DLT L + +P  MIR
Subjt:  EEDLTRLHIDYPTFMIR

Q6DEW6 RNA exonuclease 41.4e-1235.04Show/hide
Query:  VALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGV
        VA+ C MVG G DG     ARV +++     ++  YV+PT  VT+YR   +G+RP+ +++    K VQ ++ E L               + R LVGH V
Subjt:  VALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGV

Query:  EEDLTRLHIDYPTFMIR
          DL  L +D+P   IR
Subjt:  EEDLTRLHIDYPTFMIR

Q6PAQ4 RNA exonuclease 43.0e-1534.53Show/hide
Query:  LGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKKIQEFLCNG
        LG   + +++E         +A+AL C MVG G  G     ARV +++Q    ++  YV+PT PVT+YR   +G+RPE L+     + V+K++ E L   
Subjt:  LGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKKIQEFLCNG

Query:  EPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR
                    K RILVGH +  DL  L +D+P   IR
Subjt:  EPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR

Q91560 RNA exonuclease 43.3e-1437.61Show/hide
Query:  VALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGV
        VA+ C MVG G DG     ARV +++     ++  YV+PT  VT+YR   +G+RPE ++   P K VQK++ E L               + R LVGH V
Subjt:  VALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGV

Query:  EEDLTRLHIDYPTFMIR
          DL  L +D+P   IR
Subjt:  EEDLTRLHIDYPTFMIR

Q9GZR2 RNA exonuclease 42.1e-1635.86Show/hide
Query:  AVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKKIQEFLCNGEPMWKIRPGATGKARILVGHG
        A+AL C MVG G  G     ARV +++Q    ++  YV+PT PVT+YR   +G+RPE L+    L+ VQK++ E L               K RILVGH 
Subjt:  AVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKKIQEFLCNGEPMWKIRPGATGKARILVGHG

Query:  VEEDLTRLHIDYPTFMIRYNMENGKKEGYEGCVATMRLYMRMKSQ
        +  DL  L +D+P   IR   +  K + ++  V + R  +R+ S+
Subjt:  VEEDLTRLHIDYPTFMIRYNMENGKKEGYEGCVATMRLYMRMKSQ

Arabidopsis top hitse value%identityAlignment
AT2G48100.1 Exonuclease family protein6.7e-7140.56Show/hide
Query:  TLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGP--LPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRPVNSR
        ++RH+C  C++ FN+ EHLVEHM+IS+HS H+P C +C KHC+SFES+REHL  P  L K +C  IF  RGC +CL IFE    L  H  +C L P    
Subjt:  TLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGP--LPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRPVNSR

Query:  EIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKK
                LG   +     +    R   +A+AL C MVG G+DG++  CA VCL+  +E++IFST+VQP LPVT+YR E TG+  E L+D MPL+ V+++
Subjt:  EIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKK

Query:  IQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLYMRMKS
        +  FLC G+       GA G+  +LVGH +  D++ L ++YP+ ++R                           Y ++ GK E YE CV+ MRLY RM+ 
Subjt:  IQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLYMRMKS

Query:  QVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLD--SNP
        Q H      + S     +     KQ +LEKM+ +++ Q S S+Y CWCLD  SNP
Subjt:  QVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLD--SNP

AT2G48100.2 Exonuclease family protein6.7e-7140.56Show/hide
Query:  TLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGP--LPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRPVNSR
        ++RH+C  C++ FN+ EHLVEHM+IS+HS H+P C +C KHC+SFES+REHL  P  L K +C  IF  RGC +CL IFE    L  H  +C L P    
Subjt:  TLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGP--LPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRPVNSR

Query:  EIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKK
                LG   +     +    R   +A+AL C MVG G+DG++  CA VCL+  +E++IFST+VQP LPVT+YR E TG+  E L+D MPL+ V+++
Subjt:  EIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKK

Query:  IQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLYMRMKS
        +  FLC G+       GA G+  +LVGH +  D++ L ++YP+ ++R                           Y ++ GK E YE CV+ MRLY RM+ 
Subjt:  IQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLYMRMKS

Query:  QVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLD--SNP
        Q H      + S     +     KQ +LEKM+ +++ Q S S+Y CWCLD  SNP
Subjt:  QVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLD--SNP

AT2G48100.3 Exonuclease family protein6.7e-7140.56Show/hide
Query:  TLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGP--LPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRPVNSR
        ++RH+C  C++ FN+ EHLVEHM+IS+HS H+P C +C KHC+SFES+REHL  P  L K +C  IF  RGC +CL IFE    L  H  +C L P    
Subjt:  TLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGP--LPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRPVNSR

Query:  EIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKK
                LG   +     +    R   +A+AL C MVG G+DG++  CA VCL+  +E++IFST+VQP LPVT+YR E TG+  E L+D MPL+ V+++
Subjt:  EIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKK

Query:  IQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLYMRMKS
        +  FLC G+       GA G+  +LVGH +  D++ L ++YP+ ++R                           Y ++ GK E YE CV+ MRLY RM+ 
Subjt:  IQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLYMRMKS

Query:  QVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLD--SNP
        Q H      + S     +     KQ +LEKM+ +++ Q S S+Y CWCLD  SNP
Subjt:  QVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLD--SNP

AT3G27970.1 Exonuclease family protein3.9e-11959.54Show/hide
Query:  SETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRPVNSR
        SETLR+KCA C+RQFNK+EHLVEHM+IS+HS HEPTC +C KHCRSFESLREHLIGPLPKQ+C NIF+ RGC+ C+ I ESP   R H ERCQ   VNS 
Subjt:  SETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRPVNSR

Query:  EIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKK
         +  R   LG  DK M      T       VALSC MVG GSDGSL  CARVC+  +++++IF TYV+P++ VT+YR+E+TG+RPE LRDAMPLKQVQ+K
Subjt:  EIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQVQKK

Query:  IQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLYMRMKS
        IQEFLCNGEPMWKIRP   GKARILVGHG++ DL RL ++YP+ MIR                           Y++  G ++ YE CVATMRLY RM+ 
Subjt:  IQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLYMRMKS

Query:  QVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS
        Q HK E YPLA+D QN+ N   W+Q E E+MSP +ML ISRSDYYCWCLDS
Subjt:  QVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS

AT5G40310.1 Exonuclease family protein1.8e-11657.63Show/hide
Query:  ETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRPVNSRE
        +T R+KC GC+RQFNK EHLVEHMRIS+HS HEPTC +C+KHCRSF+SLREHLIGPLPKQ+C NIF+ RGC+ CL I ESP   R H ERCQL  V S  
Subjt:  ETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICLAIFESPLKLRAHHERCQLRPVNSRE

Query:  IMGRFGNLGNCDKLMTMENGGTKRYEN----EAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQV
        +M R   LG       + N  T  Y +      VALSC MVG GSDGSL  CARVC+  ++E+++F TYV+PT+PVTNYR+E TG+RPE LRDAM LK  
Subjt:  IMGRFGNLGNCDKLMTMENGGTKRYEN----EAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPEYLRDAMPLKQV

Query:  QKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLYMR
        Q+K+QEFLCNGEPMWKIRP   GKARILVGHG++  L  L ++Y + MIR                           Y++  G ++ YE CVATMRLY R
Subjt:  QKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIR---------------------------YNMENGKKEGYEGCVATMRLYMR

Query:  MKSQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS
        M+ Q H+ E YPLASD QN +NFA W+Q ELE+MSP+++L +SRSDYYCWCLDS
Subjt:  MKSQVHKREDYPLASDPQNKHNFAIWKQFELEKMSPQQMLQISRSDYYCWCLDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCTGAACCCGGAGCGACCATTATAAATACTCCTCTTTTCTCACTATTTCGCAGTAGATTCAGTTTGGACTTAGCAACGTATAATATGGATCACCCATCTGAAAC
TTTAAGGCACAAATGTGCAGGTTGTTTCAGGCAGTTCAACAAAATAGAGCACTTAGTAGAGCATATGAGAATCTCATTTCACTCATTTCATGAACCCACTTGCTCCCTTT
GCCACAAACATTGCAGATCCTTTGAATCTCTTAGAGAACATCTTATTGGGCCACTGCCAAAGCAAGATTGCAACAACATATTCAATACAAGAGGATGCAAAATCTGCTTA
GCCATCTTTGAGAGTCCACTCAAGCTTAGGGCTCACCATGAAAGATGTCAACTTAGGCCCGTAAATTCCAGGGAAATTATGGGGCGTTTTGGGAACTTGGGAAATTGTGA
CAAATTGATGACGATGGAAAATGGGGGCACAAAGAGGTATGAAAATGAAGCAGTGGCATTGAGTTGCACAATGGTGGGCGCTGGCAGCGATGGCTCGCTTCATACCTGCG
CAAGGGTTTGCCTTATCCACCAAAATGAGTCCCTCATCTTTTCTACTTATGTTCAGCCAACCCTTCCCGTCACTAACTATAGGTTTGAATCCACGGGTGTTCGTCCAGAA
TACTTGAGAGATGCAATGCCATTGAAGCAAGTTCAAAAGAAAATACAAGAGTTTCTATGCAATGGAGAACCAATGTGGAAAATTCGACCTGGAGCTACTGGAAAAGCAAG
GATTCTTGTGGGTCATGGCGTAGAAGAAGACCTTACACGTTTGCACATTGACTATCCTACTTTCATGATAAGATACAATATGGAAAATGGGAAGAAAGAGGGTTATGAGG
GGTGTGTTGCCACAATGAGATTGTACATGAGAATGAAATCCCAAGTTCACAAAAGAGAGGATTATCCATTGGCTTCTGATCCACAAAATAAACATAACTTTGCAATTTGG
AAGCAATTTGAGCTTGAGAAGATGAGCCCACAACAAATGTTGCAAATTTCAAGATCTGATTACTATTGTTGGTGCTTAGACTCCAACCCTTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATCTGAACCCGGAGCGACCATTATAAATACTCCTCTTTTCTCACTATTTCGCAGTAGATTCAGTTTGGACTTAGCAACGTATAATATGGATCACCCATCTGAAAC
TTTAAGGCACAAATGTGCAGGTTGTTTCAGGCAGTTCAACAAAATAGAGCACTTAGTAGAGCATATGAGAATCTCATTTCACTCATTTCATGAACCCACTTGCTCCCTTT
GCCACAAACATTGCAGATCCTTTGAATCTCTTAGAGAACATCTTATTGGGCCACTGCCAAAGCAAGATTGCAACAACATATTCAATACAAGAGGATGCAAAATCTGCTTA
GCCATCTTTGAGAGTCCACTCAAGCTTAGGGCTCACCATGAAAGATGTCAACTTAGGCCCGTAAATTCCAGGGAAATTATGGGGCGTTTTGGGAACTTGGGAAATTGTGA
CAAATTGATGACGATGGAAAATGGGGGCACAAAGAGGTATGAAAATGAAGCAGTGGCATTGAGTTGCACAATGGTGGGCGCTGGCAGCGATGGCTCGCTTCATACCTGCG
CAAGGGTTTGCCTTATCCACCAAAATGAGTCCCTCATCTTTTCTACTTATGTTCAGCCAACCCTTCCCGTCACTAACTATAGGTTTGAATCCACGGGTGTTCGTCCAGAA
TACTTGAGAGATGCAATGCCATTGAAGCAAGTTCAAAAGAAAATACAAGAGTTTCTATGCAATGGAGAACCAATGTGGAAAATTCGACCTGGAGCTACTGGAAAAGCAAG
GATTCTTGTGGGTCATGGCGTAGAAGAAGACCTTACACGTTTGCACATTGACTATCCTACTTTCATGATAAGATACAATATGGAAAATGGGAAGAAAGAGGGTTATGAGG
GGTGTGTTGCCACAATGAGATTGTACATGAGAATGAAATCCCAAGTTCACAAAAGAGAGGATTATCCATTGGCTTCTGATCCACAAAATAAACATAACTTTGCAATTTGG
AAGCAATTTGAGCTTGAGAAGATGAGCCCACAACAAATGTTGCAAATTTCAAGATCTGATTACTATTGTTGGTGCTTAGACTCCAACCCTTCATAA
Protein sequenceShow/hide protein sequence
MESEPGATIINTPLFSLFRSRFSLDLATYNMDHPSETLRHKCAGCFRQFNKIEHLVEHMRISFHSFHEPTCSLCHKHCRSFESLREHLIGPLPKQDCNNIFNTRGCKICL
AIFESPLKLRAHHERCQLRPVNSREIMGRFGNLGNCDKLMTMENGGTKRYENEAVALSCTMVGAGSDGSLHTCARVCLIHQNESLIFSTYVQPTLPVTNYRFESTGVRPE
YLRDAMPLKQVQKKIQEFLCNGEPMWKIRPGATGKARILVGHGVEEDLTRLHIDYPTFMIRYNMENGKKEGYEGCVATMRLYMRMKSQVHKREDYPLASDPQNKHNFAIW
KQFELEKMSPQQMLQISRSDYYCWCLDSNPS