CuGenDBv2

Gene ID	Clc09G22105
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Superoxide dismutase
Genome location	ClcChr09:35452325..35453327
RNA-Seq Expression	Clc09G22105
Synteny	Clc09G22105
Gene Ontology terms	GO:0019430 - removal of superoxide radicals (biological process) GO:0004784 - superoxide dismutase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR001189 - Manganese/iron superoxide dismutase IPR019831 - Manganese/iron superoxide dismutase, N-terminal IPR036324 - Manganese/iron superoxide dismutase, N-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

APO14282.1 superoxide dismutase [Luffa aegyptiaca]

1.4e-14

56.1

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Query:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH
        L +L YDYGALEPV+N  IM+ HHQKHHQAYITNYNK L+QLHEAI+KGH  TV ++             H I W+    IH
Subjt:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH

XP_008457297.1 PREDICTED: superoxide dismutase [Mn], mitochondrial-like isoform X1 [Cucumis melo]

5.0e-15

57.32

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Query:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH
        L +L YDYGALEPV+N  IM+ HHQKHHQAYITNYNK L+QLHEAI+KGHT TV ++             H I W     IH
Subjt:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH

XP_008457298.1 PREDICTED: superoxide dismutase [Mn], mitochondrial-like isoform X2 [Cucumis melo]

5.0e-15

57.32

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Query:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH
        L +L YDYGALEPV+N  IM+ HHQKHHQAYITNYNK L+QLHEAI+KGHT TV ++             H I W     IH
Subjt:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH

XP_011649383.1 superoxide dismutase [Mn], mitochondrial [Cucumis sativus]

5.0e-15

57.32

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Query:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH
        L +L YDYGALEPV+N  IM+ HHQKHHQAYITNYNK L+QLHEAI+KGHT TV ++             H I W     IH
Subjt:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH

XP_038893496.1 superoxide dismutase [Mn], mitochondrial-like [Benincasa hispida]

1.4e-14

57.32

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Query:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH
        L +L YDYGALEPV+N  IM+ HHQKHHQAYITNYNK L+QLHEAI KGHT TV ++             H I W     IH
Subjt:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQ39 Superoxide dismutase

2.4e-15

57.32

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Query:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH
        L +L YDYGALEPV+N  IM+ HHQKHHQAYITNYNK L+QLHEAI+KGHT TV ++             H I W     IH
Subjt:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH

A0A1L5JHV8 Superoxide dismutase

7.0e-15

56.1

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Query:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH
        L +L YDYGALEPV+N  IM+ HHQKHHQAYITNYNK L+QLHEAI+KGH  TV ++             H I W+    IH
Subjt:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH

A0A1S3C5V1 Superoxide dismutase

2.4e-15

57.32

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Query:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH
        L +L YDYGALEPV+N  IM+ HHQKHHQAYITNYNK L+QLHEAI+KGHT TV ++             H I W     IH
Subjt:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH

A0A1S3C6G3 Superoxide dismutase

2.4e-15

57.32

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Query:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH
        L +L YDYGALEPV+N  IM+ HHQKHHQAYITNYNK L+QLHEAI+KGHT TV ++             H I W     IH
Subjt:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH

A0A5A7UZ97 Superoxide dismutase

2.4e-15

57.32

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Query:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH
        L +L YDYGALEPV+N  IM+ HHQKHHQAYITNYNK L+QLHEAI+KGHT TV ++             H I W     IH
Subjt:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIH

SwissProt top hits

e value

%identity

Alignment

O49066 Superoxide dismutase [Mn], mitochondrial

5.7e-14

59.68

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Query:  VANLLLANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQI
        V    L +L YDYGALEP ++  IM+ HHQKHHQ YITNYN  LQQLH+AI+KG + TV ++
Subjt:  VANLLLANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQI

O81235 Superoxide dismutase [Mn] 1, mitochondrial

6.3e-13

55.93

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Query:  VANLLLANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTV
        +    L +L YDYGALEP ++  IM+ HHQKHHQAY+TNYN  L+QL +A++KG   TV
Subjt:  VANLLLANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTV

P11796 Superoxide dismutase [Mn], mitochondrial

3.7e-13

59.65

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Query:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQI
        L +L YDYGALEP ++  IM+ HHQ HHQ Y+TNYNK L+QLH+AI KG   TV ++
Subjt:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQI

P27084 Superoxide dismutase [Mn], mitochondrial

1.3e-13

66.04

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Query:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFT
        L +L YDYGALEPV++  IM+ HHQKHHQ YITNYNK L+QLH+A+ K  T T
Subjt:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFT

P35017 Superoxide dismutase [Mn], mitochondrial

4.8e-13

62.96

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Query:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTV
        L +L YDYGALEP ++  IM+ HHQKHHQ YITNYNK L+QL++AI+KG +  V
Subjt:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTV

Arabidopsis top hits

e value

%identity

Alignment

AT3G10920.1 manganese superoxide dismutase 1

4.5e-14

55.93

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Query:  VANLLLANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTV
        +    L +L YDYGALEP ++  IM+ HHQKHHQAY+TNYN  L+QL +A++KG   TV
Subjt:  VANLLLANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTV

AT3G10920.2 manganese superoxide dismutase 1

4.5e-14

55.93

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Query:  VANLLLANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTV
        +    L +L YDYGALEP ++  IM+ HHQKHHQAY+TNYN  L+QL +A++KG   TV
Subjt:  VANLLLANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTV

AT3G56350.1 Iron/manganese superoxide dismutase family protein

9.6e-09

36.67

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Query:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIHFLEKSCPH
        L +L Y Y ALEP ++  IM  HHQKHHQ Y+T YNK L  L  A+  G   +V ++             H I W+    +H      PH
Subjt:  LANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKW----------HQIQWQRSQIIHFLEKSCPH

Sequences

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CDS sequence

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ATGGCATGGACAGTTTCTTGGGTTGCAAATCTTCTCCTTGCTAACCTCCATTATGACTATGGCGCTCTTGAGCCCGTCATGAACACCACAATCATGGAATTCCATCATCA
GAAACACCATCAAGCCTACATCACCAACTACAACAAAACTCTTCAGCAGCTTCACGAGGCCATTGACAAAGGCCACACTTTCACTGTTCATCAAATTCCAAAATGGCATC
AAATTCAATGGCAGAGGTCACAAATCATTCATTTTTTGGAAAAATCTTGCCCTCATTCATGTACGGGGATGACTGAGGCTGAAAATTTGTTCGAAGCTTTCAAGAATTTT
GGACAGGATTGCTATTTCTTATCAATTAAGAGCTGCGATAATGCGTAG

mRNA sequence

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Protein sequence

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MAWTVSWVANLLLANLHYDYGALEPVMNTTIMEFHHQKHHQAYITNYNKTLQQLHEAIDKGHTFTVHQIPKWHQIQWQRSQIIHFLEKSCPHSCTGMTEAENLFEAFKNF
GQDCYFLSIKSCDNA

Clc09G22105 (gene) of Watermelon (cordophanus) v2 genome