; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc09G22880 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G22880
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPre-mRNA-splicing factor like
Genome locationClcChr09:36239878..36243192
RNA-Seq ExpressionClc09G22880
SyntenyClc09G22880
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK07949.1 uncharacterized protein E5676_scaffold265G00660 [Cucumis melo var. makuwa]8.9e-5592.5Show/hide
Query:  NTDGFVIPSLGIEETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM
        NTDGFVIPSLGIEETDQT+VGSPKVEI+EPPPKVKEET IYLGPHGAPPSQSKQDLNP NRKQRLK KLKEADRRTT GRENKLENLRELVG GKSSTNM
Subjt:  NTDGFVIPSLGIEETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM

Query:  AKGSSRDWLDPHCHEAQFEK
         KGSSRDWLDPHCHEA+FEK
Subjt:  AKGSSRDWLDPHCHEAQFEK
XP_004150791.2 uncharacterized protein LOC101216518 [Cucumis sativus]2.8e-5694.17Show/hide
Query:  NTDGFVIPSLGIEETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM
        +TDGFVIPSLGIEE DQT+VGSPKVEI+EPPPKVKEET IYLGPHGAPPSQSKQDLNP NRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM
Subjt:  NTDGFVIPSLGIEETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM

Query:  AKGSSRDWLDPHCHEAQFEK
        AKGSSRDWLDPHCHEA+FEK
Subjt:  AKGSSRDWLDPHCHEAQFEK
XP_022139462.1 uncharacterized protein LOC111010385 [Momordica charantia]4.0e-5594.17Show/hide
Query:  NTDGFVIPSLGIEETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM
        +TDGFVIPSLGIEETDQTKVGSP+VEI EPPPK KEET IYLGPHGAPPSQSKQDLN  NRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM
Subjt:  NTDGFVIPSLGIEETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM

Query:  AKGSSRDWLDPHCHEAQFEK
        AKGSSRDWLDPHCHEAQFEK
Subjt:  AKGSSRDWLDPHCHEAQFEK
XP_022975858.1 uncharacterized protein LOC111476432 [Cucurbita maxima]2.0e-5493.44Show/hide
Query:  NTDGFVIPSLGI--EETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSST
        +TDGFVIPSLGI  EETDQTKV SPKVEIQEPPPKVKEE  IYLGPHGAPPSQSKQDLNPANRK RLKQKLKEADRRTTTGRENKLENLRELVGGGKSST
Subjt:  NTDGFVIPSLGI--EETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSST

Query:  NMAKGSSRDWLDPHCHEAQFEK
        NM KGSSRDWLDPHCHEAQFEK
Subjt:  NMAKGSSRDWLDPHCHEAQFEK
XP_038898121.1 uncharacterized protein LOC120085905 [Benincasa hispida]7.2e-5795.83Show/hide
Query:  NTDGFVIPSLGIEETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM
        +TDGFVIPSLGIEET+QTK GSPKVEIQEPPPKVKEET IYLGPHGAPPSQSKQDLNP NRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM
Subjt:  NTDGFVIPSLGIEETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM

Query:  AKGSSRDWLDPHCHEAQFEK
        AKGSSRDWLDPHCHEAQFEK
Subjt:  AKGSSRDWLDPHCHEAQFEK
TrEMBL top hitse value%identityAlignment
A0A0A0K8B7 Uncharacterized protein1.3e-5694.17Show/hide
Query:  NTDGFVIPSLGIEETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM
        +TDGFVIPSLGIEE DQT+VGSPKVEI+EPPPKVKEET IYLGPHGAPPSQSKQDLNP NRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM
Subjt:  NTDGFVIPSLGIEETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM

Query:  AKGSSRDWLDPHCHEAQFEK
        AKGSSRDWLDPHCHEA+FEK
Subjt:  AKGSSRDWLDPHCHEAQFEK
A0A1S3CJS1 uncharacterized protein LOC1035012431.6e-5491.67Show/hide
Query:  NTDGFVIPSLGIEETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM
        +TDGFVIPSLGIEETDQT+VGSPKVEI+EPPPKVKEET IYLGPHGAPPSQSKQDLNP NRKQRLK KLKEADRRTT GRENKLENLRELVG GKSSTNM
Subjt:  NTDGFVIPSLGIEETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM

Query:  AKGSSRDWLDPHCHEAQFEK
         KGSSRDWLDPHCHEA+FEK
Subjt:  AKGSSRDWLDPHCHEAQFEK
A0A5D3CCA9 Uncharacterized protein4.3e-5592.5Show/hide
Query:  NTDGFVIPSLGIEETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM
        NTDGFVIPSLGIEETDQT+VGSPKVEI+EPPPKVKEET IYLGPHGAPPSQSKQDLNP NRKQRLK KLKEADRRTT GRENKLENLRELVG GKSSTNM
Subjt:  NTDGFVIPSLGIEETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM

Query:  AKGSSRDWLDPHCHEAQFEK
         KGSSRDWLDPHCHEA+FEK
Subjt:  AKGSSRDWLDPHCHEAQFEK
A0A6J1CE06 uncharacterized protein LOC1110103851.9e-5594.17Show/hide
Query:  NTDGFVIPSLGIEETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM
        +TDGFVIPSLGIEETDQTKVGSP+VEI EPPPK KEET IYLGPHGAPPSQSKQDLN  NRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM
Subjt:  NTDGFVIPSLGIEETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNM

Query:  AKGSSRDWLDPHCHEAQFEK
        AKGSSRDWLDPHCHEAQFEK
Subjt:  AKGSSRDWLDPHCHEAQFEK
A0A6J1IKG2 uncharacterized protein LOC1114764329.6e-5593.44Show/hide
Query:  NTDGFVIPSLGI--EETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSST
        +TDGFVIPSLGI  EETDQTKV SPKVEIQEPPPKVKEE  IYLGPHGAPPSQSKQDLNPANRK RLKQKLKEADRRTTTGRENKLENLRELVGGGKSST
Subjt:  NTDGFVIPSLGI--EETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLNPANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSST

Query:  NMAKGSSRDWLDPHCHEAQFEK
        NM KGSSRDWLDPHCHEAQFEK
Subjt:  NMAKGSSRDWLDPHCHEAQFEK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G55640.1 unknown protein1.5e-3161.11Show/hide
Query:  NTDGFVIPSLGIEETDQTKVGSPKVEIQEP-PPKVKEETMIYLGPHGAPPSQSKQ-DLNPANRKQRLKQKLKEADRRTT-TGRENKLENLRELVGGG---
        +TDGFVIPSL IEE         +VE  +P  PK K E  IYLGPHGAPPSQ +    N ++RKQR KQ LKEAD++ + +GRENK+ NLRELVGGG   
Subjt:  NTDGFVIPSLGIEETDQTKVGSPKVEIQEP-PPKVKEETMIYLGPHGAPPSQSKQ-DLNPANRKQRLKQKLKEADRRTT-TGRENKLENLRELVGGG---

Query:  KSSTNMAKGSSRDWLDPHCHEAQFEK
        +  TNM KG SRDWLDPHCHE+QFEK
Subjt:  KSSTNMAKGSSRDWLDPHCHEAQFEK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGTCAGTATTCAATGGACCCGTCGTCAGTGCACAAAGCTCCTCCAGTTGAAGAAGATGAGTGGGATAAATAGAAGATACTTGGATAAACCACGGCTAAATGGGCA
TTGCCAGTCCAAAAAACTCCCAGAAGTGCATGGACGAACCATTGCTCACAACACTGATGGGTTCGTAATTCCTAGCTTGGGAATAGAAGAGACAGACCAAACTAAAGTTG
GCTCTCCAAAAGTAGAAATTCAAGAACCGCCTCCAAAGGTTAAAGAAGAGACGATGATATATCTTGGCCCACATGGCGCACCACCATCACAGTCAAAACAAGATTTGAAC
CCCGCCAATCGTAAGCAACGGTTAAAGCAGAAATTGAAGGAAGCTGATCGGAGGACCACGACAGGACGAGAGAATAAGTTGGAGAATTTAAGAGAGCTTGTAGGTGGTGG
GAAATCAAGCACCAATATGGCAAAGGGTTCTTCTAGGGACTGGCTTGACCCACATTGCCATGAGGCTCAGTTCGAGAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCGTCAGTATTCAATGGACCCGTCGTCAGTGCACAAAGCTCCTCCAGTTGAAGAAGATGAGTGGGATAAATAGAAGATACTTGGATAAACCACGGCTAAATGGGCA
TTGCCAGTCCAAAAAACTCCCAGAAGTGCATGGACGAACCATTGCTCACAACACTGATGGGTTCGTAATTCCTAGCTTGGGAATAGAAGAGACAGACCAAACTAAAGTTG
GCTCTCCAAAAGTAGAAATTCAAGAACCGCCTCCAAAGGTTAAAGAAGAGACGATGATATATCTTGGCCCACATGGCGCACCACCATCACAGTCAAAACAAGATTTGAAC
CCCGCCAATCGTAAGCAACGGTTAAAGCAGAAATTGAAGGAAGCTGATCGGAGGACCACGACAGGACGAGAGAATAAGTTGGAGAATTTAAGAGAGCTTGTAGGTGGTGG
GAAATCAAGCACCAATATGGCAAAGGGTTCTTCTAGGGACTGGCTTGACCCACATTGCCATGAGGCTCAGTTCGAGAAGTAA
Protein sequenceShow/hide protein sequence
MIVSIQWTRRQCTKLLQLKKMSGINRRYLDKPRLNGHCQSKKLPEVHGRTIAHNTDGFVIPSLGIEETDQTKVGSPKVEIQEPPPKVKEETMIYLGPHGAPPSQSKQDLN
PANRKQRLKQKLKEADRRTTTGRENKLENLRELVGGGKSSTNMAKGSSRDWLDPHCHEAQFEK