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Clc09G23010 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G23010
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionAvrRpt-cleavage domain-containing protein
Genome locationClcChr09:36378270..36380539
RNA-Seq ExpressionClc09G23010
SyntenyClc09G23010
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645904.1 hypothetical protein Csa_011859 [Cucumis sativus]1.9e-3665.93Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPPYVYCISTSS--CKLLEIHEMKMGSICNYRNQIFKIYNFK
        DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGR A DPAK PP   C+   +  C LL                        
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPPYVYCISTSS--CKLLEIHEMKMGSICNYRNQIFKIYNFK

Query:  KERSIRNGFAVSKVPLLNLEKVHLEASVEKLHIIL
         +  IRNGFAV KVPLLNL+KV LEA+VEKLHIIL
Subjt:  KERSIRNGFAVSKVPLLNLEKVHLEASVEKLHIIL

XP_008463014.1 PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo]2.7e-2793.94Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPPYVY
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGR A DPAKAPP  Y
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPPYVY

XP_008463015.1 PREDICTED: RPM1-interacting protein 4-like isoform X2 [Cucumis melo]2.7e-2782.89Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPP--YVYCISTSSCK
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGR A DPAKAPP  ++ CI + + +
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPP--YVYCISTSSCK

XP_022139562.1 RPM1-interacting protein 4 [Momordica charantia]6.1e-2786.11Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPP--YVYCIST
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GRP ADP+KAPP  ++ CI +
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPP--YVYCIST

XP_038897827.1 protein NOI4 [Benincasa hispida]1.1e-2890.28Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPP--YVYCIST
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPP  ++ CI +
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPP--YVYCIST

TrEMBL top hitse value%identityAlignment
A0A0A0K6Y6 AvrRpt-cleavage domain-containing protein4.9e-3866.42Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPPYVYCISTSS--CKLLEIHEMKMGSICNYRNQIFKIYN
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGR A DPAK PP   C+   +  C LL                      
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPPYVYCISTSS--CKLLEIHEMKMGSICNYRNQIFKIYN

Query:  FKKERSIRNGFAVSKVPLLNLEKVHLEASVEKLHIIL
           +  IRNGFAV KVPLLNL+KV LEA+VEKLHIIL
Subjt:  FKKERSIRNGFAVSKVPLLNLEKVHLEASVEKLHIIL

A0A1S3CI83 RPM1-interacting protein 4-like isoform X11.3e-2793.94Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPPYVY
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGR A DPAKAPP  Y
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPPYVY

A0A1S3CI91 RPM1-interacting protein 4-like isoform X21.3e-2782.89Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPP--YVYCISTSSCK
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGR A DPAKAPP  ++ CI + + +
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPP--YVYCISTSSCK

A0A5A7TZ14 RPM1-interacting protein 4-like isoform X23.9e-2796.83Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPP
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGR A DPAKAPP
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPP

A0A6J1CEA3 RPM1-interacting protein 43.0e-2786.11Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPP--YVYCIST
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GRP ADP+KAPP  ++ CI +
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPP--YVYCIST

SwissProt top hitse value%identityAlignment
O22633 Protein NOI47.5e-2075.38Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK-VDAHGRP-AADPAKAPP
        M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  + H +    DP+K  P
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK-VDAHGRP-AADPAKAPP

Q8GYN5 RPM1-interacting protein 43.6e-0642.86Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAH
        +K   +PKFG+WD N+P+SA+G+T IFNK R+E+ +G       +   H
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAH

Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein2.9e-1971.88Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK----VDAHGRPAADPAK
        M DKGRPLPKFGEWDVNDP+SAEGFTVIFNKAR+EKK GGK DSPGK     + +G     PAK
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK----VDAHGRPAADPAK

AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein6.3e-2262.5Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK-VDAHGRP-AADPAKAPP---YVYCISTSSCKLLEIHEMKM
        M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  + H +    DP+K  P        ++SSC LL   +M +
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK-VDAHGRP-AADPAKAPP---YVYCISTSSCKLLEIHEMKM

AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein4.1e-2162.79Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK-VDAHGRP-AADPAKAPP---YVYCISTSSCKLLEIHEMKM
        DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  + H +    DP+K  P        ++SSC LL   +M +
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK-VDAHGRP-AADPAKAPP---YVYCISTSSCKLLEIHEMKM

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein3.5e-2076.19Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK-VDAHGRP-AADPAKAPP
        DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  + H +    DP+K  P
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK-VDAHGRP-AADPAKAPP

AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein2.7e-1271.74Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKT----GGKPDS
        +KG+PLPKFGEWDVN+P SAEGFTVIF+KA DEKKT    G  P+S
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKT----GGKPDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGACAAAGGTCGGCCACTGCCAAAATTTGGTGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGTTTTACCGTGATTTTTAACAAAGCTAGAGATGAGAAGAA
AACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACATGGCAGGCCTGCAGCAGATCCTGCCAAGGCACCGCCTTATGTTTATTGTATTTCAACCAGTAGTTGCA
AGCTTTTGGAGATTCATGAAATGAAAATGGGATCAATATGTAACTATAGAAACCAAATCTTCAAAATCTATAATTTTAAGAAGGAAAGATCAATAAGAAATGGCTTTGCT
GTATCCAAAGTCCCCCTGCTGAATCTTGAGAAGGTTCATTTAGAAGCCTCAGTTGAAAAACTTCATATTATTCTGTAA
mRNA sequenceShow/hide mRNA sequence
TGTTATATATTTTCTTATAAAGATTTCCGTATCTAATTAGCCCACTTTTAGCCCAATTTACAAAAGTCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAAT
TTGCTTCTCTTATTTTCTCTACTTTGATTGATTTGAAATTCCATTGTTTTTCCTCCGAAACGTTCTCTCTCTAGAATTCATGACGGACAAAGGTCGGCCACTGCCAAAAT
TTGGTGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGTTTTACCGTGATTTTTAACAAAGCTAGAGATGAGAAGAAAACAGGCGGCAAACCTGATTCACCTGGAAAA
GTTGATGCACATGGCAGGCCTGCAGCAGATCCTGCCAAGGCACCGCCTTATGTTTATTGTATTTCAACCAGTAGTTGCAAGCTTTTGGAGATTCATGAAATGAAAATGGG
ATCAATATGTAACTATAGAAACCAAATCTTCAAAATCTATAATTTTAAGAAGGAAAGATCAATAAGAAATGGCTTTGCTGTATCCAAAGTCCCCCTGCTGAATCTTGAGA
AGGTTCATTTAGAAGCCTCAGTTGAAAAACTTCATATTATTCTGTAATTGTCTGCTGTGGCTTCTCAAATACAATGAACTTTCATGGAGCCTTGATGGTCCTGCTAAATT
TTATGCAATTTCATGTAAATCTGAGTGTTGTTGTTGTGGAGGAAAAAGTAAAGAAGACAAACATGTATTGTATTTATATTATTGATATGGTGGTTTTTTATTAGGAGATA
AAGGTGCTATTCTGTCTTTGCCTTTGGTGTGAGCTGTAAAGCTTTGCACTGGACATCATGTATAATTGTGGCTGGTATAATTAATGTAATACAACTTTTGCTTTTTTTTC
AACTAAGCCAACATTTGATGTCTGGCTTAGTTCTCCCATAACTCACAAACTTAGAGACACTTGAGAAAATAAAGTGTGTGTTTATTGTATTCCAACC
Protein sequenceShow/hide protein sequence
MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAPPYVYCISTSSCKLLEIHEMKMGSICNYRNQIFKIYNFKKERSIRNGFA
VSKVPLLNLEKVHLEASVEKLHIIL