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Clc09G23190 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G23190
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTy3/gypsy retrotransposon protein
Genome locationClcChr09:36543251..36543679
RNA-Seq ExpressionClc09G23190
SyntenyClc09G23190
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041253.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-4461.7Show/hide
Query:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK
        MKK AD KRRDVEFQ G++VFL +RPYRQ++LR++RNEKLSP YFG YR+  RIG VAY+LELP +A IH +FHV QLK+ +G+   +QPL   + E  +
Subjt:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK

Query:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD
        WIT+P EI+ YRKN  T  WE LV WKGLP HEATWE + D
Subjt:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD

KAA0050511.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]8.9e-4560.99Show/hide
Query:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK
        MKK AD KRR+VEFQ G+ VFL +RPYRQ+++R++RNEKLSP YFG YRV  RIG+VAYRLELP  A IH +FHV QLK+ +G   T+Q L   + E  +
Subjt:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK

Query:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD
        WIT+P E++GYRKN  T  WE L+ WKGLP HEATWE   D
Subjt:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD

KAA0063300.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-4461.7Show/hide
Query:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK
        MKK AD KRRDVEFQ G++VFL +RPYRQ++LR++RNEKLSP YFG YR+  RIG VAY+LELP +A IH +FHV QLK+ +G    +QPL   + E  +
Subjt:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK

Query:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD
        WIT+P EI+ YRKN  T  WE LV WKGLP HEATWE + D
Subjt:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD

TYK06572.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]8.9e-4560.99Show/hide
Query:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK
        MKK AD KRR+VEFQ G+ VFL +RPYRQ+++R++RNEKLSP YFG YRV  RIG+VAYRLELP  A IH +FHV QLK+ +G   T+Q L   + E  +
Subjt:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK

Query:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD
        WIT+P E++GYRKN  T  WE L+ WKGLP HEATWE   D
Subjt:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD

TYK24654.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]8.9e-4560.99Show/hide
Query:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK
        MKK AD KRR+VEFQ G+ VFL +RPYRQ+++R++RNEKLSP YFG YRV  RIG+VAYRLELP  A IH +FHV QLK+ +G   T+Q L   + E  +
Subjt:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK

Query:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD
        WIT+P E++GYRKN  T  WE L+ WKGLP HEATWE   D
Subjt:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD

TrEMBL top hitse value%identityAlignment
A0A5A7TDM4 Ty3/gypsy retrotransposon protein5.6e-4561.7Show/hide
Query:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK
        MKK AD KRRDVEFQ G++VFL +RPYRQ++LR++RNEKLSP YFG YR+  RIG VAY+LELP +A IH +FHV QLK+ +G+   +QPL   + E  +
Subjt:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK

Query:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD
        WIT+P EI+ YRKN  T  WE LV WKGLP HEATWE + D
Subjt:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD

A0A5A7UAE4 Ty3/gypsy retrotransposon protein4.3e-4560.99Show/hide
Query:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK
        MKK AD KRR+VEFQ G+ VFL +RPYRQ+++R++RNEKLSP YFG YRV  RIG+VAYRLELP  A IH +FHV QLK+ +G   T+Q L   + E  +
Subjt:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK

Query:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD
        WIT+P E++GYRKN  T  WE L+ WKGLP HEATWE   D
Subjt:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD

A0A5A7V7S9 Ty3/gypsy retrotransposon protein9.6e-4561.7Show/hide
Query:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK
        MKK AD KRRDVEFQ G++VFL +RPYRQ++LR++RNEKLSP YFG YR+  RIG VAY+LELP +A IH +FHV QLK+ +G    +QPL   + E  +
Subjt:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK

Query:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD
        WIT+P EI+ YRKN  T  WE LV WKGLP HEATWE + D
Subjt:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD

A0A5D3C5N7 Ty3/gypsy retrotransposon protein4.3e-4560.99Show/hide
Query:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK
        MKK AD KRR+VEFQ G+ VFL +RPYRQ+++R++RNEKLSP YFG YRV  RIG+VAYRLELP  A IH +FHV QLK+ +G   T+Q L   + E  +
Subjt:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK

Query:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD
        WIT+P E++GYRKN  T  WE L+ WKGLP HEATWE   D
Subjt:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD

A0A5D3DM31 Ty3/gypsy retrotransposon protein4.3e-4560.99Show/hide
Query:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK
        MKK AD KRR+VEFQ G+ VFL +RPYRQ+++R++RNEKLSP YFG YRV  RIG+VAYRLELP  A IH +FHV QLK+ +G   T+Q L   + E  +
Subjt:  MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDK

Query:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD
        WIT+P E++GYRKN  T  WE L+ WKGLP HEATWE   D
Subjt:  WITEPPEIFGYRKNSKTYVWEVLVRWKGLPAHEATWELFDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGAATGCTGATAGGAAGAGACGTGATGTTGAGTTTCAGGTTGGTGAGTGGGTGTTTTTAAATATTCGTCCTTATCGTCAATCGACTTTGCGTCAAAGGCGGAA
TGAGAAACTTTCCCCAAATTATTTCGGGCTTTATAGAGTGTCGAATAGAATTGGGGAGGTCGCATATCGTTTGGAGTTACCACCATCGGCGACTATCCATCTGATTTTCC
ATGTGTTGCAGTTGAAACGGGTTTTGGGAGAACATCACACTATTCAACCTTTAGTGCAACAATTAACAGAAACTGATAAGTGGATAACTGAACCACCTGAGATTTTTGGC
TATCGTAAGAATTCGAAAACCTATGTATGGGAAGTGTTGGTCAGATGGAAAGGATTACCGGCTCATGAGGCGACTTGGGAACTTTTTGATGACTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGAATGCTGATAGGAAGAGACGTGATGTTGAGTTTCAGGTTGGTGAGTGGGTGTTTTTAAATATTCGTCCTTATCGTCAATCGACTTTGCGTCAAAGGCGGAA
TGAGAAACTTTCCCCAAATTATTTCGGGCTTTATAGAGTGTCGAATAGAATTGGGGAGGTCGCATATCGTTTGGAGTTACCACCATCGGCGACTATCCATCTGATTTTCC
ATGTGTTGCAGTTGAAACGGGTTTTGGGAGAACATCACACTATTCAACCTTTAGTGCAACAATTAACAGAAACTGATAAGTGGATAACTGAACCACCTGAGATTTTTGGC
TATCGTAAGAATTCGAAAACCTATGTATGGGAAGTGTTGGTCAGATGGAAAGGATTACCGGCTCATGAGGCGACTTGGGAACTTTTTGATGACTTCTAG
Protein sequenceShow/hide protein sequence
MKKNADRKRRDVEFQVGEWVFLNIRPYRQSTLRQRRNEKLSPNYFGLYRVSNRIGEVAYRLELPPSATIHLIFHVLQLKRVLGEHHTIQPLVQQLTETDKWITEPPEIFG
YRKNSKTYVWEVLVRWKGLPAHEATWELFDDF