; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc09G23200 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G23200
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTy3/gypsy retrotransposon protein
Genome locationClcChr09:36543838..36544900
RNA-Seq ExpressionClc09G23200
SyntenyClc09G23200
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035107.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-8649.86Show/hide
Query:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS
        +AVV+AVQ WRPYL GRKF +KTDQ++LK LLEQRV+QPQYQKW+ KLLGY F VVY+P LENKAA ALSRVPPAVHL+ + AP ++D+EIIK E   D 
Subjt:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS

Query:  KLKEVIAKLEQ-----------------------------------------------------------------------------------------
         L+E+   LE+                                                                                         
Subjt:  KLKEVIAKLEQ-----------------------------------------------------------------------------------------

Query:  ---------------DVDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLS
                        +D + G+ KSK  DVI VVVDRLSKY HFL LKHPF+AKVV + FVKE+VRLHG P SIVSDRDKVFLSHFW+ELFRL GTKL+
Subjt:  ---------------DVDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLS

Query:  QSSTYHPQTDGQTEVVNRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS
        +SS+YHPQ+DGQTEVVN+ +E YLRCFC E+P +W  WLHWAEYWYNTT HSS
Subjt:  QSSTYHPQTDGQTEVVNRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS

KAA0038266.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.3e-8754.04Show/hide
Query:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS
        +AVV+AVQ WRPYL GRKF +KTDQ++LK LLEQRV+QPQYQKW+ KLLGY F VVY+P LENKAA ALSR+ PAVHL  + AP ++D+EIIK E   D 
Subjt:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS

Query:  KLKEVIAKLEQDV-----------------------------------DSV--------------------------------------PGITKSKRDDV
         L+E+   LE+ +                                   DSV                                       G+ KSK  DV
Subjt:  KLKEVIAKLEQDV-----------------------------------DSV--------------------------------------PGITKSKRDDV

Query:  ILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVVNRHVEAYLRCFCSER
        I VVVDRLSKY HFL LKHPF+AK+V + FVK +VRLHG P SIVSDRDKVFLSHFW+ELFRL GTKL++SS+YHPQ+DGQTEVVN+ +E YLRCFC E+
Subjt:  ILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVVNRHVEAYLRCFCSER

Query:  PKKWVNWLHWAEYWYNTTGHSS
        P +W  WLHWAEYWYNTT HSS
Subjt:  PKKWVNWLHWAEYWYNTTGHSS

KAA0038753.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-8649.86Show/hide
Query:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS
        +AVV+AVQ WRPYL GRKF +KTDQ++LK LLEQRV+QPQYQKW+ KLLGY F VVY+P LENKAA ALSRVPPAVHL+ + AP ++D+EIIK E   D 
Subjt:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS

Query:  KLKEVIAKLEQ-----------------------------------------------------------------------------------------
         L+E+   LE+                                                                                         
Subjt:  KLKEVIAKLEQ-----------------------------------------------------------------------------------------

Query:  ---------------DVDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLS
                        +D + G+ KSK  DVI VVVDRLSKY HFL LKHPF+AKVV + FVKE+VRLHG P SIVSDRDKVFLSHFW+ELFRL GTKL+
Subjt:  ---------------DVDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLS

Query:  QSSTYHPQTDGQTEVVNRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS
        +SS+YHPQ+DGQTEVVN+ +E YLRCFC E+P +W  WLHWAEYWYNTT HSS
Subjt:  QSSTYHPQTDGQTEVVNRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS

TYK08591.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-8649.86Show/hide
Query:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS
        +AVV+AVQ WRPYL GRKF +KTDQ++LK LLEQRV+QPQYQKW+ KLLGY F VVY+P LENKAA ALSRVPPAVHL+ + AP ++D+EIIK E   D 
Subjt:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS

Query:  KLKEVIAKLEQ-----------------------------------------------------------------------------------------
         L+E+   LE+                                                                                         
Subjt:  KLKEVIAKLEQ-----------------------------------------------------------------------------------------

Query:  ---------------DVDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLS
                        +D + G+ KSK  DVI VVVDRLSKY HFL LKHPF+AKVV + FVKE+VRLHG P SIVSDRDKVFLSHFW+ELFRL GTKL+
Subjt:  ---------------DVDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLS

Query:  QSSTYHPQTDGQTEVVNRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS
        +SS+YHPQ+DGQTEVVN+ +E YLRCFC E+P +W  WLHWAEYWYNTT HSS
Subjt:  QSSTYHPQTDGQTEVVNRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS

TYK14862.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]4.6e-8958.82Show/hide
Query:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS
        MAV+++VQ WRPYL G KFI+KTDQ++LK LLEQRVIQPQYQKW+ KLLGY F VVY+P LENKAA ALSR PP + L  + AP ++D+++IK EV  D 
Subjt:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS

Query:  KLKEVIAKLEQD--------------------------------------------VDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDV
        KLK+VIA L ++                                            +D + G+ K+K  DVILVVVDRLSKYSHFL LKHP+TAK V D+
Subjt:  KLKEVIAKLEQD--------------------------------------------VDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDV

Query:  FVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVVNRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTT
        FVKEIVRLHG PSSIVSDRDK+FLSHFW ELF++ GTKL +S  YH Q+DGQTEVVNR +E YLRCFCSERP++W+ WL W EYWYNTT
Subjt:  FVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVVNRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTT

TrEMBL top hitse value%identityAlignment
A0A5A7SS61 Ty3/gypsy retrotransposon protein1.0e-8649.86Show/hide
Query:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS
        +AVV+AVQ WRPYL GRKF +KTDQ++LK LLEQRV+QPQYQKW+ KLLGY F VVY+P LENKAA ALSRVPPAVHL+ + AP ++D+EIIK E   D 
Subjt:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS

Query:  KLKEVIAKLEQ-----------------------------------------------------------------------------------------
         L+E+   LE+                                                                                         
Subjt:  KLKEVIAKLEQ-----------------------------------------------------------------------------------------

Query:  ---------------DVDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLS
                        +D + G+ KSK  DVI VVVDRLSKY HFL LKHPF+AKVV + FVKE+VRLHG P SIVSDRDKVFLSHFW+ELFRL GTKL+
Subjt:  ---------------DVDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLS

Query:  QSSTYHPQTDGQTEVVNRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS
        +SS+YHPQ+DGQTEVVN+ +E YLRCFC E+P +W  WLHWAEYWYNTT HSS
Subjt:  QSSTYHPQTDGQTEVVNRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS

A0A5A7T725 Ty3/gypsy retrotransposon protein1.0e-8649.86Show/hide
Query:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS
        +AVV+AVQ WRPYL GRKF +KTDQ++LK LLEQRV+QPQYQKW+ KLLGY F VVY+P LENKAA ALSRVPPAVHL+ + AP ++D+EIIK E   D 
Subjt:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS

Query:  KLKEVIAKLEQ-----------------------------------------------------------------------------------------
         L+E+   LE+                                                                                         
Subjt:  KLKEVIAKLEQ-----------------------------------------------------------------------------------------

Query:  ---------------DVDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLS
                        +D + G+ KSK  DVI VVVDRLSKY HFL LKHPF+AKVV + FVKE+VRLHG P SIVSDRDKVFLSHFW+ELFRL GTKL+
Subjt:  ---------------DVDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLS

Query:  QSSTYHPQTDGQTEVVNRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS
        +SS+YHPQ+DGQTEVVN+ +E YLRCFC E+P +W  WLHWAEYWYNTT HSS
Subjt:  QSSTYHPQTDGQTEVVNRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS

A0A5A7T7R9 Ty3/gypsy retrotransposon protein2.1e-8754.04Show/hide
Query:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS
        +AVV+AVQ WRPYL GRKF +KTDQ++LK LLEQRV+QPQYQKW+ KLLGY F VVY+P LENKAA ALSR+ PAVHL  + AP ++D+EIIK E   D 
Subjt:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS

Query:  KLKEVIAKLEQDV-----------------------------------DSV--------------------------------------PGITKSKRDDV
         L+E+   LE+ +                                   DSV                                       G+ KSK  DV
Subjt:  KLKEVIAKLEQDV-----------------------------------DSV--------------------------------------PGITKSKRDDV

Query:  ILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVVNRHVEAYLRCFCSER
        I VVVDRLSKY HFL LKHPF+AK+V + FVK +VRLHG P SIVSDRDKVFLSHFW+ELFRL GTKL++SS+YHPQ+DGQTEVVN+ +E YLRCFC E+
Subjt:  ILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVVNRHVEAYLRCFCSER

Query:  PKKWVNWLHWAEYWYNTTGHSS
        P +W  WLHWAEYWYNTT HSS
Subjt:  PKKWVNWLHWAEYWYNTTGHSS

A0A5D3CTT4 Transposon Tf2-1 polyprotein isoform X12.2e-8958.82Show/hide
Query:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS
        MAV+++VQ WRPYL G KFI+KTDQ++LK LLEQRVIQPQYQKW+ KLLGY F VVY+P LENKAA ALSR PP + L  + AP ++D+++IK EV  D 
Subjt:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS

Query:  KLKEVIAKLEQD--------------------------------------------VDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDV
        KLK+VIA L ++                                            +D + G+ K+K  DVILVVVDRLSKYSHFL LKHP+TAK V D+
Subjt:  KLKEVIAKLEQD--------------------------------------------VDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDV

Query:  FVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVVNRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTT
        FVKEIVRLHG PSSIVSDRDK+FLSHFW ELF++ GTKL +S  YH Q+DGQTEVVNR +E YLRCFCSERP++W+ WL W EYWYNTT
Subjt:  FVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVVNRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTT

A0A5D3DMY9 Ty3/gypsy retrotransposon protein1.0e-8649.86Show/hide
Query:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS
        +AVV+AVQ WRPYL GRKF +KTDQ++LK LLEQRV+QPQYQKW+ KLLGY F VVY+P LENKAA ALSRVPPAVHL+ + AP ++D+EIIK E   D 
Subjt:  MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDS

Query:  KLKEVIAKLEQ-----------------------------------------------------------------------------------------
         L+E+   LE+                                                                                         
Subjt:  KLKEVIAKLEQ-----------------------------------------------------------------------------------------

Query:  ---------------DVDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLS
                        +D + G+ KSK  DVI VVVDRLSKY HFL LKHPF+AKVV + FVKE+VRLHG P SIVSDRDKVFLSHFW+ELFRL GTKL+
Subjt:  ---------------DVDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLS

Query:  QSSTYHPQTDGQTEVVNRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS
        +SS+YHPQ+DGQTEVVN+ +E YLRCFC E+P +W  WLHWAEYWYNTT HSS
Subjt:  QSSTYHPQTDGQTEVVNRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.7e-1732.85Show/hide
Query:  VDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVV
        +D +  + +S   + + VVVDR SK +  +      TA+    +F + ++   G P  I++D D +F S  W++        +  S  Y PQTDGQTE  
Subjt:  VDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVV

Query:  NRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS
        N+ VE  LRC CS  P  WV+ +   +  YN   HS+
Subjt:  NRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS

P0CT35 Transposon Tf2-2 polyprotein1.7e-1732.85Show/hide
Query:  VDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVV
        +D +  + +S   + + VVVDR SK +  +      TA+    +F + ++   G P  I++D D +F S  W++        +  S  Y PQTDGQTE  
Subjt:  VDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVV

Query:  NRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS
        N+ VE  LRC CS  P  WV+ +   +  YN   HS+
Subjt:  NRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS

P0CT36 Transposon Tf2-3 polyprotein1.7e-1732.85Show/hide
Query:  VDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVV
        +D +  + +S   + + VVVDR SK +  +      TA+    +F + ++   G P  I++D D +F S  W++        +  S  Y PQTDGQTE  
Subjt:  VDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVV

Query:  NRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS
        N+ VE  LRC CS  P  WV+ +   +  YN   HS+
Subjt:  NRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS

P0CT41 Transposon Tf2-12 polyprotein1.7e-1732.85Show/hide
Query:  VDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVV
        +D +  + +S   + + VVVDR SK +  +      TA+    +F + ++   G P  I++D D +F S  W++        +  S  Y PQTDGQTE  
Subjt:  VDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVV

Query:  NRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS
        N+ VE  LRC CS  P  WV+ +   +  YN   HS+
Subjt:  NRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS

Q9UR07 Transposon Tf2-11 polyprotein1.7e-1732.85Show/hide
Query:  VDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVV
        +D +  + +S   + + VVVDR SK +  +      TA+    +F + ++   G P  I++D D +F S  W++        +  S  Y PQTDGQTE  
Subjt:  VDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVV

Query:  NRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS
        N+ VE  LRC CS  P  WV+ +   +  YN   HS+
Subjt:  NRHVEAYLRCFCSERPKKWVNWLHWAEYWYNTTGHSS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTAGTGATGGCCGTGCAGCATTGGAGACCTTATTTGTTCGGGAGGAAATTTATTCTGAAGACTGATCAGCAAGCGTTGAAACTTTTGTTGGAGCAGAGGGTGAT
ACAACCACAATATCAGAAGTGGATTGGGAAATTGTTGGGCTATGATTTCTCGGTGGTTTATAGACCGAGGTTAGAAAACAAGGCTGCTTATGCTTTATCTCGAGTTCCAC
CTGCAGTACATTTGGCTTATTTGTGCGCCCCTACCATTCTTGATGTAGAGATTATTAAAATAGAGGTATTAACTGATTCGAAGTTGAAAGAGGTGATTGCAAAGTTGGAG
CAGGATGTTGATAGTGTTCCTGGGATTACCAAAAGCAAAAGAGATGATGTTATCTTGGTAGTGGTTGACAGATTGAGTAAGTATAGTCATTTCCTTACACTGAAACATCC
ATTCACTGCTAAAGTGGTCCCAGATGTGTTTGTAAAGGAGATCGTGCGCCTACATGGATTGCCAAGTTCTATTGTGTCGGATAGAGACAAGGTATTCCTTAGTCATTTCT
GGCGTGAGTTGTTTAGATTGGTAGGTACGAAATTGAGCCAAAGTTCAACTTATCATCCACAAACGGATGGTCAAACTGAAGTGGTAAACCGTCACGTCGAGGCGTATTTG
AGGTGTTTTTGTAGTGAAAGGCCGAAGAAGTGGGTTAATTGGTTACATTGGGCTGAATATTGGTACAACACCACGGGTCATAGTTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTAGTGATGGCCGTGCAGCATTGGAGACCTTATTTGTTCGGGAGGAAATTTATTCTGAAGACTGATCAGCAAGCGTTGAAACTTTTGTTGGAGCAGAGGGTGAT
ACAACCACAATATCAGAAGTGGATTGGGAAATTGTTGGGCTATGATTTCTCGGTGGTTTATAGACCGAGGTTAGAAAACAAGGCTGCTTATGCTTTATCTCGAGTTCCAC
CTGCAGTACATTTGGCTTATTTGTGCGCCCCTACCATTCTTGATGTAGAGATTATTAAAATAGAGGTATTAACTGATTCGAAGTTGAAAGAGGTGATTGCAAAGTTGGAG
CAGGATGTTGATAGTGTTCCTGGGATTACCAAAAGCAAAAGAGATGATGTTATCTTGGTAGTGGTTGACAGATTGAGTAAGTATAGTCATTTCCTTACACTGAAACATCC
ATTCACTGCTAAAGTGGTCCCAGATGTGTTTGTAAAGGAGATCGTGCGCCTACATGGATTGCCAAGTTCTATTGTGTCGGATAGAGACAAGGTATTCCTTAGTCATTTCT
GGCGTGAGTTGTTTAGATTGGTAGGTACGAAATTGAGCCAAAGTTCAACTTATCATCCACAAACGGATGGTCAAACTGAAGTGGTAAACCGTCACGTCGAGGCGTATTTG
AGGTGTTTTTGTAGTGAAAGGCCGAAGAAGTGGGTTAATTGGTTACATTGGGCTGAATATTGGTACAACACCACGGGTCATAGTTCATAG
Protein sequenceShow/hide protein sequence
MAVVMAVQHWRPYLFGRKFILKTDQQALKLLLEQRVIQPQYQKWIGKLLGYDFSVVYRPRLENKAAYALSRVPPAVHLAYLCAPTILDVEIIKIEVLTDSKLKEVIAKLE
QDVDSVPGITKSKRDDVILVVVDRLSKYSHFLTLKHPFTAKVVPDVFVKEIVRLHGLPSSIVSDRDKVFLSHFWRELFRLVGTKLSQSSTYHPQTDGQTEVVNRHVEAYL
RCFCSERPKKWVNWLHWAEYWYNTTGHSS