; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc09G23870 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G23870
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description60S ribosomal export protein NMD3
Genome locationClcChr09:37258181..37263775
RNA-Seq ExpressionClc09G23870
SyntenyClc09G23870
Gene Ontology termsGO:0000055 - ribosomal large subunit export from nucleus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0043023 - ribosomal large subunit binding (molecular function)
InterPro domainsIPR007064 - Nmd3, N-terminal
IPR039768 - Ribosomal export protein Nmd3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036240.1 60S ribosomal export protein NMD3 [Cucumis melo var. makuwa]1.1e-13772.01Show/hide
Query:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------
        DH CESCSR+QANPDQWVASVQLRQHV HRRTFFFLEQLILKHGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEF+G                       
Subjt:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------

Query:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI
          KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALL PFTLRHCFLDADQYWRTSFRSLLTSRQLVEY+VLDIENVSTEVNV GSKY+
Subjt:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI

Query:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGAN--------------------------------------------------SRAEED
        LA AQV RVSDFGRNDT+F I+THLGHILNPGDYALGYDLYGAN                                                  S+ +E+
Subjt:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGAN--------------------------------------------------SRAEED

Query:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE
         MNSEYEQFLRDLEENPD+RFNISLYRNREYQPSE+TDGE DGPSVPL+ELLADLDLSE + DD M+E
Subjt:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE

XP_004143504.1 60S ribosomal export protein NMD3 [Cucumis sativus]5.0e-13872.28Show/hide
Query:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------
        DH CESCSR+QANPDQWVASVQLRQHV HRRTFFFLEQLILKHGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEF+G                       
Subjt:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------

Query:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI
          KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALL PFTLRHCFLDADQYWRTSFRSLLTSRQLVEY+VLDIENVSTEVNV GSKY+
Subjt:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI

Query:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANS--------------------------------------------------RAEED
        LA AQV RVSDFGRNDT+F I+THLGHILNPGDYALGYDLYGANS                                                  + +E+
Subjt:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANS--------------------------------------------------RAEED

Query:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE
         MNSEYEQFLRDLEENPD+RFNISLYRNREYQPSE+TDGE DGPSVPLEELLADLDLSE + DD M+E
Subjt:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE

XP_022149109.1 60S ribosomal export protein NMD3 [Momordica charantia]5.4e-14073.37Show/hide
Query:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------
        DH CESCSRVQANPDQWVASVQLRQHV HRRTFFFLEQLILKHGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEF+G                       
Subjt:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------

Query:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI
          KHTFSVEI PICREDLICLPPKVAVSLGNLGPLVICTKVTN+IALL PFTLRHCFLDADQYWRTSFRSLLTSRQLVEYI+LDIENVS EVNVGGSKY+
Subjt:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI

Query:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANS--------------------------------------------------RAEED
        LADAQV RVSDFGRNDTIF IRTHLGHILNPGDYALGYDLY ANS                                                  R ++D
Subjt:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANS--------------------------------------------------RAEED

Query:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE
         MNSEYEQFLRDLEENPD+RFNISLYRNREYQ SEMTDGE DGPSVPLEELLADLDLSE D DDGM+E
Subjt:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE

XP_038883907.1 60S ribosomal export protein NMD3 isoform X1 [Benincasa hispida]5.0e-13873.1Show/hide
Query:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------
        DH CESCSRVQANPDQWVASVQLRQHV HRRTFFFLEQLILKHGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEFIG                       
Subjt:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------

Query:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI
          KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALL PFTLRHCFLDA+QYWRTSFRSLLTSRQLVEY+VLDIENVSTEVNV GSKY+
Subjt:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI

Query:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANS--------------------------------------------------RAEED
        LA AQV R+SDFGRNDTIF I+THLGHILNPGDYALGYDLYGANS                                                  +AEED
Subjt:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANS--------------------------------------------------RAEED

Query:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE
          NSEYEQFLRDLEENPD+RFNISLYRNREYQPSEMTDGE DGPSVPLEELLADLDLSE + D+ M E
Subjt:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE

XP_038883908.1 60S ribosomal export protein NMD3 isoform X2 [Benincasa hispida]5.0e-13873.1Show/hide
Query:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------
        DH CESCSRVQANPDQWVASVQLRQHV HRRTFFFLEQLILKHGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEFIG                       
Subjt:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------

Query:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI
          KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALL PFTLRHCFLDA+QYWRTSFRSLLTSRQLVEY+VLDIENVSTEVNV GSKY+
Subjt:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI

Query:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANS--------------------------------------------------RAEED
        LA AQV R+SDFGRNDTIF I+THLGHILNPGDYALGYDLYGANS                                                  +AEED
Subjt:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANS--------------------------------------------------RAEED

Query:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE
          NSEYEQFLRDLEENPD+RFNISLYRNREYQPSEMTDGE DGPSVPLEELLADLDLSE + D+ M E
Subjt:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE

TrEMBL top hitse value%identityAlignment
A0A0A0KGY6 60S ribosomal export protein NMD32.4e-13872.28Show/hide
Query:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------
        DH CESCSR+QANPDQWVASVQLRQHV HRRTFFFLEQLILKHGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEF+G                       
Subjt:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------

Query:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI
          KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALL PFTLRHCFLDADQYWRTSFRSLLTSRQLVEY+VLDIENVSTEVNV GSKY+
Subjt:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI

Query:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANS--------------------------------------------------RAEED
        LA AQV RVSDFGRNDT+F I+THLGHILNPGDYALGYDLYGANS                                                  + +E+
Subjt:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANS--------------------------------------------------RAEED

Query:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE
         MNSEYEQFLRDLEENPD+RFNISLYRNREYQPSE+TDGE DGPSVPLEELLADLDLSE + DD M+E
Subjt:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE

A0A1S3B197 60S ribosomal export protein NMD35.4e-13872.01Show/hide
Query:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------
        DH CESCSR+QANPDQWVASVQLRQHV HRRTFFFLEQLILKHGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEF+G                       
Subjt:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------

Query:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI
          KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALL PFTLRHCFLDADQYWRTSFRSLLTSRQLVEY+VLDIENVSTEVNV GSKY+
Subjt:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI

Query:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGAN--------------------------------------------------SRAEED
        LA AQV RVSDFGRNDT+F I+THLGHILNPGDYALGYDLYGAN                                                  S+ +E+
Subjt:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGAN--------------------------------------------------SRAEED

Query:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE
         MNSEYEQFLRDLEENPD+RFNISLYRNREYQPSE+TDGE DGPSVPL+ELLADLDLSE + DD M+E
Subjt:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE

A0A5A7SYS9 60S ribosomal export protein NMD35.4e-13872.01Show/hide
Query:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------
        DH CESCSR+QANPDQWVASVQLRQHV HRRTFFFLEQLILKHGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEF+G                       
Subjt:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------

Query:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI
          KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALL PFTLRHCFLDADQYWRTSFRSLLTSRQLVEY+VLDIENVSTEVNV GSKY+
Subjt:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI

Query:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGAN--------------------------------------------------SRAEED
        LA AQV RVSDFGRNDT+F I+THLGHILNPGDYALGYDLYGAN                                                  S+ +E+
Subjt:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGAN--------------------------------------------------SRAEED

Query:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE
         MNSEYEQFLRDLEENPD+RFNISLYRNREYQPSE+TDGE DGPSVPL+ELLADLDLSE + DD M+E
Subjt:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE

A0A5D3CM67 60S ribosomal export protein NMD35.4e-13872.01Show/hide
Query:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------
        DH CESCSR+QANPDQWVASVQLRQHV HRRTFFFLEQLILKHGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEF+G                       
Subjt:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------

Query:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI
          KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALL PFTLRHCFLDADQYWRTSFRSLLTSRQLVEY+VLDIENVSTEVNV GSKY+
Subjt:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI

Query:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGAN--------------------------------------------------SRAEED
        LA AQV RVSDFGRNDT+F I+THLGHILNPGDYALGYDLYGAN                                                  S+ +E+
Subjt:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGAN--------------------------------------------------SRAEED

Query:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE
         MNSEYEQFLRDLEENPD+RFNISLYRNREYQPSE+TDGE DGPSVPL+ELLADLDLSE + DD M+E
Subjt:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE

A0A6J1D613 60S ribosomal export protein NMD32.6e-14073.37Show/hide
Query:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------
        DH CESCSRVQANPDQWVASVQLRQHV HRRTFFFLEQLILKHGAAA AIRIKQMDQGIDFFFSNRSHGVKFVEF+G                       
Subjt:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------

Query:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI
          KHTFSVEI PICREDLICLPPKVAVSLGNLGPLVICTKVTN+IALL PFTLRHCFLDADQYWRTSFRSLLTSRQLVEYI+LDIENVS EVNVGGSKY+
Subjt:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI

Query:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANS--------------------------------------------------RAEED
        LADAQV RVSDFGRNDTIF IRTHLGHILNPGDYALGYDLY ANS                                                  R ++D
Subjt:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANS--------------------------------------------------RAEED

Query:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE
         MNSEYEQFLRDLEENPD+RFNISLYRNREYQ SEMTDGE DGPSVPLEELLADLDLSE D DDGM+E
Subjt:  IMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE

SwissProt top hitse value%identityAlignment
G0S488 60S ribosomal export protein NMD39.8e-5234.6Show/hide
Query:  CESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-------------------------K
        C  C++     + W A VQ+RQ V+H+RTF  LEQLILKH A    I IK+   G+DFFF+ R+    FV F+                          K
Subjt:  CESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-------------------------K

Query:  HTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILAD
         T+S EI PICR+DL+ LP K+A  +GN+ PL +C ++  A+ LL P TL    L +D YWR  FR L  +  +VE+IV+DIE  +T +  G  K++LA+
Subjt:  HTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILAD

Query:  AQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGAN------------------------------------------------------SRAEE
          V R SD G ND ++F RTHLGH+L+PGD  +GY L G N                                                         ++
Subjt:  AQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGAN------------------------------------------------------SRAEE

Query:  DIMNSEYEQFLRDLEENPDMRFNISLYRN--REYQPSE--------MTDGEDDGPSVPLEELLADLD
          M+ EYE FLRD+EE+ ++R  ++LY+N  +  +P +         T+ +DDGP + ++ELL D +
Subjt:  DIMNSEYEQFLRDLEENPDMRFNISLYRN--REYQPSE--------MTDGEDDGPSVPLEELLADLD

P38861 60S ribosomal export protein NMD31.8e-5033.68Show/hide
Query:  FEIKTMFMLDHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG--------------
        FE++   ++   C  C+R     + W A+VQ+RQ V H+RTF FLEQLILKH A    I I +   G+DFF++ ++H VK ++F+               
Subjt:  FEIKTMFMLDHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG--------------

Query:  -----------KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTE
                   K ++SVEI PIC++DL+ LP K+A S+GN+   V+C+K++N +  + P TL+   L    YWR  F +L    QLVE+IVLD++  ST 
Subjt:  -----------KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTE

Query:  VNVGGSKYILADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGY---------DLYGA---------------------------------------
        ++ G    +LAD  V R SD G ND ++++R+HLG I + GD  +GY         DL+                                         
Subjt:  VNVGGSKYILADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGY---------DLYGA---------------------------------------

Query:  -----NSRAEEDIM---NSEYEQFLRDLEENPDMRFNISLYRNREY----QPSEMTDGED-DGPSVPLEELLADLDLSESDRDDGM
             NSRA++  M     +YE FL++LEE+ ++R +++LY+NRE     +  EM + ED D P + ++ELL +LD  E   +DG+
Subjt:  -----NSRAEEDIM---NSEYEQFLRDLEENPDMRFNISLYRNREY----QPSEMTDGED-DGPSVPLEELLADLDLSESDRDDGM

Q55BF2 60S ribosomal export protein NMD31.9e-5537.88Show/hide
Query:  CESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-------------------------K
        C+ C + +A  D W + VQLRQ V H+RTF ++EQLILKH A ++ + IK+   G+DFFFSNR+H +KFVEFI                          K
Subjt:  CESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-------------------------K

Query:  HTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGS---KYI
        +TFSVEI P+ ++D++CLPPK+A  LGN+GPLV+ TKV+N I  + P TL    + A  +W + FR+L + +QLVE+ VLD       VN+ G+   +Y 
Subjt:  HTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGS---KYI

Query:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGAN--------------------------------------------------SRAEED
        L+D Q+ R +DFG ND I+ IR+HLG+ILNPGD ALGYD+  +N                                                   + E D
Subjt:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGAN--------------------------------------------------SRAEED

Query:  IMNSEYEQFLRDLEENPDMRFNISLYRNRE
         M  + E+FLR++E +P++R  I++Y+  +
Subjt:  IMNSEYEQFLRDLEENPDMRFNISLYRNRE

Q6GNS3 60S ribosomal export protein NMD36.3e-5132.79Show/hide
Query:  IKTMFMLDH-----SCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------
        ++ +F++D+      C+ C RV+A  D W A VQ+RQ V H++TF++LEQ ILKH      +R+K++  G+DF+++++ HG K VEF+            
Subjt:  IKTMFMLDH-----SCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------

Query:  --------------KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENV
                      K TFSVEI P+C+++L+CL PK+A SLGN+  + IC +VT+ I L+ P TL+   +D + YWR  F SL   +Q+ E+IV+D E +
Subjt:  --------------KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENV

Query:  STEVNVGG-----SKYILADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANSRAE----------EDIM---------------------
               G     +K++LA+  V + S+       +  RTHLGH+LNPGD  LG+DL   N   E           D++                     
Subjt:  STEVNVGG-----SKYILADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANSRAE----------EDIM---------------------

Query:  ------------NSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSE
                      +Y+ FL DLEE+  +R N+++++N    P E    E+  P + L E+L DL +S+
Subjt:  ------------NSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSE

Q6P2Z6 60S ribosomal export protein NMD32.2e-5133.24Show/hide
Query:  IKTMFMLDH-----SCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------
        ++ +F++D+      C+ C RV+A  D W A VQ+RQ V H++TF++LEQ ILKH      +R+K++  G+DF+++++ H  K VEF+            
Subjt:  IKTMFMLDH-----SCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------

Query:  --------------KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENV
                      K TFSVEI P+C+++L+CL PK+A SLGN+  + IC +VT+ I L+ P TL+   +D + YWR+ F SL   +QL E+IV+D + V
Subjt:  --------------KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENV

Query:  STEVNVGG-----SKYILADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANSRAEEDIMNS-----------------------------
               G     +K+ILA+  V + S+       +  RTHLGH+LNPGD  LG+DL  AN    ++ +N                              
Subjt:  STEVNVGG-----SKYILADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANSRAEEDIMNS-----------------------------

Query:  ----------------EYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLS
                        +Y+ FL DLEE+  +R N+++Y+N    P E    E+  P + L E+L DL +S
Subjt:  ----------------EYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLS

Arabidopsis top hitse value%identityAlignment
AT2G03820.1 nonsense-mediated mRNA decay NMD3 family protein1.9e-9852.83Show/hide
Query:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------
        D+ CESCSR QANPDQWVAS+QLRQHVSHRRTFF+LEQLIL+H AA+RAIRI+Q+DQGIDFFF N+SH   FVEF+                        
Subjt:  DHSCESCSRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIG-----------------------

Query:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI
          K+T+SV+I P+CREDL+CLP KVA  LGNLGPLV+CTKV++ I LL P TLR  FLDA QYWR+ FRS LTSRQLV+Y V D+E    E  VGG KY 
Subjt:  --KHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYI

Query:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGAN------------------------------------------------------SR
        L+  Q+ R SD G+   +F+++THLGHIL PGD ALGYD+YGAN                                                       R
Subjt:  LADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGAN------------------------------------------------------SR

Query:  AEEDIMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSE---MTDGEDDGPSVPLEELLADLDLSESDRDD
         + +  + EYE+FLRDLEENP++RFNISLYR+++YQ SE   MTDGE   PSVP+EELLADLDLS  + DD
Subjt:  AEEDIMNSEYEQFLRDLEENPDMRFNISLYRNREYQPSE---MTDGEDDGPSVPLEELLADLDLSESDRDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAAAAATTTATTTGGTGACTTAGGTGGCTCAAGGAGTAATCTCAATAAAAACTGCTCTAACGTATTTTGGAAATTATATTATTTGTCTGTTCTTTCTGCTTTGAA
CGGAAGGGTGAAAGGAGGGAGCAACCGGAGAATACCAAATAGCGCACAAAAGCTTGAAATAAATAAACCTATGAAACATAGATTTAACCTTCATGGATTGCAAGCAAGAG
TAAGATCCTATGATTCCTATCTAATACAACTCCTCAGTCCACTAATTCGTAGTCCTCTTCTATTTGAGATAAAAACTATGTTCATGTTGGATCACTCGTGTGAGTCCTGC
TCAAGAGTCCAGGCCAACCCTGACCAATGGGTGGCTTCTGTTCAACTCAGGCAGCACGTCTCGCACCGGCGTACATTTTTCTTCTTGGAGCAACTGATACTCAAGCACGG
TGCTGCTGCTCGCGCAATAAGAATCAAACAGATGGATCAAGGTATTGACTTCTTCTTTTCTAATAGGAGTCATGGTGTTAAGTTTGTGGAATTTATTGGAAAGCACACTT
TCTCTGTTGAAATATCCCCAATATGCCGCGAGGATTTGATATGTTTGCCTCCTAAAGTTGCTGTTAGTTTGGGCAATCTTGGTCCTCTTGTAATTTGCACTAAAGTTACA
AATGCCATTGCTTTACTTTATCCATTCACCTTAAGGCACTGTTTCTTGGATGCTGATCAGTATTGGAGGACATCTTTTAGGTCTCTACTTACTAGCAGGCAACTTGTGGA
ATATATTGTATTGGATATAGAGAATGTTTCTACTGAAGTCAATGTTGGTGGATCAAAGTATATTTTGGCTGATGCTCAAGTAACTCGTGTATCGGATTTTGGAAGGAATG
ACACAATATTCTTCATAAGAACCCATCTAGGACATATTCTAAACCCGGGGGATTATGCCCTTGGTTATGATCTCTATGGAGCCAATAGTAGAGCAGAGGAAGATATTATG
AACTCAGAGTATGAACAGTTTTTGAGAGATTTGGAGGAGAATCCAGATATGAGGTTCAACATATCATTGTATCGAAATAGGGAATACCAACCATCTGAAATGACTGATGG
AGAAGATGATGGACCTTCGGTACCACTTGAAGAGTTGCTTGCTGATCTTGATCTAAGTGAAAGTGATAGAGATGATGGCATGCACGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCAAAAATTTATTTGGTGACTTAGGTGGCTCAAGGAGTAATCTCAATAAAAACTGCTCTAACGTATTTTGGAAATTATATTATTTGTCTGTTCTTTCTGCTTTGAA
CGGAAGGGTGAAAGGAGGGAGCAACCGGAGAATACCAAATAGCGCACAAAAGCTTGAAATAAATAAACCTATGAAACATAGATTTAACCTTCATGGATTGCAAGCAAGAG
TAAGATCCTATGATTCCTATCTAATACAACTCCTCAGTCCACTAATTCGTAGTCCTCTTCTATTTGAGATAAAAACTATGTTCATGTTGGATCACTCGTGTGAGTCCTGC
TCAAGAGTCCAGGCCAACCCTGACCAATGGGTGGCTTCTGTTCAACTCAGGCAGCACGTCTCGCACCGGCGTACATTTTTCTTCTTGGAGCAACTGATACTCAAGCACGG
TGCTGCTGCTCGCGCAATAAGAATCAAACAGATGGATCAAGGTATTGACTTCTTCTTTTCTAATAGGAGTCATGGTGTTAAGTTTGTGGAATTTATTGGAAAGCACACTT
TCTCTGTTGAAATATCCCCAATATGCCGCGAGGATTTGATATGTTTGCCTCCTAAAGTTGCTGTTAGTTTGGGCAATCTTGGTCCTCTTGTAATTTGCACTAAAGTTACA
AATGCCATTGCTTTACTTTATCCATTCACCTTAAGGCACTGTTTCTTGGATGCTGATCAGTATTGGAGGACATCTTTTAGGTCTCTACTTACTAGCAGGCAACTTGTGGA
ATATATTGTATTGGATATAGAGAATGTTTCTACTGAAGTCAATGTTGGTGGATCAAAGTATATTTTGGCTGATGCTCAAGTAACTCGTGTATCGGATTTTGGAAGGAATG
ACACAATATTCTTCATAAGAACCCATCTAGGACATATTCTAAACCCGGGGGATTATGCCCTTGGTTATGATCTCTATGGAGCCAATAGTAGAGCAGAGGAAGATATTATG
AACTCAGAGTATGAACAGTTTTTGAGAGATTTGGAGGAGAATCCAGATATGAGGTTCAACATATCATTGTATCGAAATAGGGAATACCAACCATCTGAAATGACTGATGG
AGAAGATGATGGACCTTCGGTACCACTTGAAGAGTTGCTTGCTGATCTTGATCTAAGTGAAAGTGATAGAGATGATGGCATGCACGAGTAA
Protein sequenceShow/hide protein sequence
MFKNLFGDLGGSRSNLNKNCSNVFWKLYYLSVLSALNGRVKGGSNRRIPNSAQKLEINKPMKHRFNLHGLQARVRSYDSYLIQLLSPLIRSPLLFEIKTMFMLDHSCESC
SRVQANPDQWVASVQLRQHVSHRRTFFFLEQLILKHGAAARAIRIKQMDQGIDFFFSNRSHGVKFVEFIGKHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVT
NAIALLYPFTLRHCFLDADQYWRTSFRSLLTSRQLVEYIVLDIENVSTEVNVGGSKYILADAQVTRVSDFGRNDTIFFIRTHLGHILNPGDYALGYDLYGANSRAEEDIM
NSEYEQFLRDLEENPDMRFNISLYRNREYQPSEMTDGEDDGPSVPLEELLADLDLSESDRDDGMHE