; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc09G24090 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G24090
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationClcChr09:37432533..37435151
RNA-Seq ExpressionClc09G24090
SyntenyClc09G24090
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032472.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.2e-9557.8Show/hide
Query:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN
        MEFDVV+WNSMILGLAKCGEIDESRKLFDKMPV N IS NSMIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNASAQIGAL+QGEWIHEYIKKN
Subjt:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN

Query:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTGD--------------------------FFSLMKN
        NL+LN IVVTAIIDMYCKCGS GNALQVFEKIPNRGLS WNSMIFGLAVNGCEK  I+L +  ++                            FFS MKN
Subjt:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTGD--------------------------FFSLMKN

Query:  TYRIEPS----------------------------------------------------------------------------------------RRISM
        TYRIEPS                                                                                        +R++M
Subjt:  TYRIEPS----------------------------------------------------------------------------------------RRISM

Query:  KMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI
        +MKKVEKEPGGSLIEVDDEVH+FIA GGRLH KAQEIY+VL+QLG+
Subjt:  KMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI

XP_004151347.1 pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucumis sativus]2.0e-9356.94Show/hide
Query:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN
        MEFDVV+WNSMILGLAKCGEIDESRKLFDKMPV NPIS NSMIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNASAQIGAL+QG WIHEYIKKN
Subjt:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN

Query:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTG--------------------------DFFSLMKN
        NL+LN IVVTAIIDMYCKCGS GNALQVFEKIP R LS WNSMIFGLAVNGCEK  I++ +  ++                           +FFS MKN
Subjt:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTG--------------------------DFFSLMKN

Query:  TYRIEPS----------------------------------------------------------------------------------------RRISM
        TYRIEPS                                                                                        +R++M
Subjt:  TYRIEPS----------------------------------------------------------------------------------------RRISM

Query:  KMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI
        +MKKVEKEPGGS IEVD+EVH+FIAGGGRLH KAQEIYIVL QLG+
Subjt:  KMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI

XP_008447140.1 PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucumis melo]1.2e-9557.8Show/hide
Query:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN
        MEFDVV+WNSMILGLAKCGEIDESRKLFDKMPV N IS NSMIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNASAQIGAL+QGEWIHEYIKKN
Subjt:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN

Query:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTGD--------------------------FFSLMKN
        NL+LN IVVTAIIDMYCKCGS GNALQVFEKIPNRGLS WNSMIFGLAVNGCEK  I+L +  ++                            FFS MKN
Subjt:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTGD--------------------------FFSLMKN

Query:  TYRIEPS----------------------------------------------------------------------------------------RRISM
        TYRIEPS                                                                                        +R++M
Subjt:  TYRIEPS----------------------------------------------------------------------------------------RRISM

Query:  KMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI
        +MKKVEKEPGGSLIEVDDEVH+FIA GGRLH KAQEIY+VL+QLG+
Subjt:  KMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI

XP_022148002.1 pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Momordica charantia]1.7e-8955.2Show/hide
Query:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN
        MEFD VAWNSMI+G+AKCGEI ESRKLFD MP  NPIS NSMIGGYVRNGMFKEALKLFVKMQEE+I+PSEFTMVSLLNASA IGAL+QGEWIHEYI+KN
Subjt:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN

Query:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTG--------------------------DFFSLMKN
        NLELN IVVTAIIDMYCKCGS  NALQVFEK+P+RGLS WNSMIFGLAVNGCE   I+L R  ++                           + FSLM N
Subjt:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTG--------------------------DFFSLMKN

Query:  TYRIEPS----------------------------------------------------------------------------------------RRISM
        TYRI+PS                                                                                         R+SM
Subjt:  TYRIEPS----------------------------------------------------------------------------------------RRISM

Query:  KMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI
        +MK VEKEPGGSLIEVD EVH+FIAGGGRLHPKAQEIYIVL+QLG+
Subjt:  KMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI

XP_022989190.1 pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucurbita maxima]4.2e-8853.89Show/hide
Query:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN
        MEFDVVAWNSMI GLAKCGEIDE+RK+FDKMPV NP+S NSMIGG+VRNGMFKEALKLFVKMQE+RIQPSE+TMVSLLNASAQIGALKQGEWIHEYIKKN
Subjt:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN

Query:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTGD---------------------------FFSLMK
        N+ELN+IVVTAIIDMY KCGS G ALQVFEKIPNR LS WNSMIFGLAVNGCE   +ML +  ++                             FFSLM 
Subjt:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTGD---------------------------FFSLMK

Query:  NTYRIEPS----------------------------------------------------------------------------------------RRIS
        NTYR+E S                                                                                         R+S
Subjt:  NTYRIEPS----------------------------------------------------------------------------------------RRIS

Query:  MKMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI
        M+MKKV+KE G S+IEVDDEVH+FIAGGGR HPKA+EIY+VL++LG+
Subjt:  MKMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI

TrEMBL top hitse value%identityAlignment
A0A0A0K7F6 Uncharacterized protein9.5e-9456.94Show/hide
Query:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN
        MEFDVV+WNSMILGLAKCGEIDESRKLFDKMPV NPIS NSMIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNASAQIGAL+QG WIHEYIKKN
Subjt:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN

Query:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTG--------------------------DFFSLMKN
        NL+LN IVVTAIIDMYCKCGS GNALQVFEKIP R LS WNSMIFGLAVNGCEK  I++ +  ++                           +FFS MKN
Subjt:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTG--------------------------DFFSLMKN

Query:  TYRIEPS----------------------------------------------------------------------------------------RRISM
        TYRIEPS                                                                                        +R++M
Subjt:  TYRIEPS----------------------------------------------------------------------------------------RRISM

Query:  KMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI
        +MKKVEKEPGGS IEVD+EVH+FIAGGGRLH KAQEIYIVL QLG+
Subjt:  KMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI

A0A1S3BG64 pentatricopeptide repeat-containing protein At2g42920, chloroplastic5.9e-9657.8Show/hide
Query:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN
        MEFDVV+WNSMILGLAKCGEIDESRKLFDKMPV N IS NSMIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNASAQIGAL+QGEWIHEYIKKN
Subjt:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN

Query:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTGD--------------------------FFSLMKN
        NL+LN IVVTAIIDMYCKCGS GNALQVFEKIPNRGLS WNSMIFGLAVNGCEK  I+L +  ++                            FFS MKN
Subjt:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTGD--------------------------FFSLMKN

Query:  TYRIEPS----------------------------------------------------------------------------------------RRISM
        TYRIEPS                                                                                        +R++M
Subjt:  TYRIEPS----------------------------------------------------------------------------------------RRISM

Query:  KMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI
        +MKKVEKEPGGSLIEVDDEVH+FIA GGRLH KAQEIY+VL+QLG+
Subjt:  KMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI

A0A5A7SN44 Pentatricopeptide repeat-containing protein5.9e-9657.8Show/hide
Query:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN
        MEFDVV+WNSMILGLAKCGEIDESRKLFDKMPV N IS NSMIGGYVRNGMFKEALKLF+KMQEERIQPSEFTMVSLLNASAQIGAL+QGEWIHEYIKKN
Subjt:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN

Query:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTGD--------------------------FFSLMKN
        NL+LN IVVTAIIDMYCKCGS GNALQVFEKIPNRGLS WNSMIFGLAVNGCEK  I+L +  ++                            FFS MKN
Subjt:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTGD--------------------------FFSLMKN

Query:  TYRIEPS----------------------------------------------------------------------------------------RRISM
        TYRIEPS                                                                                        +R++M
Subjt:  TYRIEPS----------------------------------------------------------------------------------------RRISM

Query:  KMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI
        +MKKVEKEPGGSLIEVDDEVH+FIA GGRLH KAQEIY+VL+QLG+
Subjt:  KMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI

A0A6J1D3W1 pentatricopeptide repeat-containing protein At2g42920, chloroplastic8.3e-9055.2Show/hide
Query:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN
        MEFD VAWNSMI+G+AKCGEI ESRKLFD MP  NPIS NSMIGGYVRNGMFKEALKLFVKMQEE+I+PSEFTMVSLLNASA IGAL+QGEWIHEYI+KN
Subjt:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN

Query:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTG--------------------------DFFSLMKN
        NLELN IVVTAIIDMYCKCGS  NALQVFEK+P+RGLS WNSMIFGLAVNGCE   I+L R  ++                           + FSLM N
Subjt:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTG--------------------------DFFSLMKN

Query:  TYRIEPS----------------------------------------------------------------------------------------RRISM
        TYRI+PS                                                                                         R+SM
Subjt:  TYRIEPS----------------------------------------------------------------------------------------RRISM

Query:  KMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI
        +MK VEKEPGGSLIEVD EVH+FIAGGGRLHPKAQEIYIVL+QLG+
Subjt:  KMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI

A0A6J1JLQ0 pentatricopeptide repeat-containing protein At2g42920, chloroplastic2.0e-8853.89Show/hide
Query:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN
        MEFDVVAWNSMI GLAKCGEIDE+RK+FDKMPV NP+S NSMIGG+VRNGMFKEALKLFVKMQE+RIQPSE+TMVSLLNASAQIGALKQGEWIHEYIKKN
Subjt:  MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKN

Query:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTGD---------------------------FFSLMK
        N+ELN+IVVTAIIDMY KCGS G ALQVFEKIPNR LS WNSMIFGLAVNGCE   +ML +  ++                             FFSLM 
Subjt:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTGD---------------------------FFSLMK

Query:  NTYRIEPS----------------------------------------------------------------------------------------RRIS
        NTYR+E S                                                                                         R+S
Subjt:  NTYRIEPS----------------------------------------------------------------------------------------RRIS

Query:  MKMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI
        M+MKKV+KE G S+IEVDDEVH+FIAGGGR HPKA+EIY+VL++LG+
Subjt:  MKMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQLGI

SwissProt top hitse value%identityAlignment
O49399 Pentatricopeptide repeat-containing protein At4g188406.9e-3342.86Show/hide
Query:  EFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQ-PSEFTMVSLLNASAQIGALKQGEWIHEYIKKN
        E +V +WN MI G A  G + E++++FD MPV + +S N+M+  Y   G + E L++F KM ++  + P  FT+VS+L+A A +G+L QGEW+H YI K+
Subjt:  EFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQ-PSEFTMVSLLNASAQIGALKQGEWIHEYIKKN

Query:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEK
         +E+   + TA++DMY KCG    AL+VF     R +S WNS+I  L+V+G  K
Subjt:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEK

Q38959 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic8.1e-3441.94Show/hide
Query:  VVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLEL
        +V+W +M+ GL    ++D +  +F++MP+ N +S  +MI  YV+N    EA +LF +MQ + ++P+EFT+V+LL AS Q+G+L  G W+H+Y  KN   L
Subjt:  VVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLEL

Query:  NTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIML
        +  + TA+IDMY KCGS  +A +VF+ +  + L+ WNSMI  L V+GC +  + L
Subjt:  NTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIML

Q9C866 Pentatricopeptide repeat-containing protein At1g314301.6e-3446.62Show/hide
Query:  DVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLE
        +V  W SM+ G    G IDE+R LF++ PV + +   +M+ GYV+   F EAL+LF  MQ   I+P  F +VSLL   AQ GAL+QG+WIH YI +N + 
Subjt:  DVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLE

Query:  LNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNG
        ++ +V TA++DMY KCG    AL+VF +I  R  + W S+I+GLA+NG
Subjt:  LNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNG

Q9FJY7 Pentatricopeptide repeat-containing protein At5g665204.5e-3242.67Show/hide
Query:  EFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNN
        E D V+WNS+I G  K G++D +  LF KM   N IS  +MI GYV+  M KEAL+LF +MQ   ++P   ++ + L+A AQ+GAL+QG+WIH Y+ K  
Subjt:  EFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNN

Query:  LELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNG
        + +++++   +IDMY KCG    AL+VF+ I  + +  W ++I G A +G
Subjt:  LELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNG

Q9SJG6 Pentatricopeptide repeat-containing protein At2g42920, chloroplastic2.2e-5539.47Show/hide
Query:  FDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNL
        FDVVAWNSMI+G AKCG ID+++ LFD+MP  N +S NSMI G+VRNG FK+AL +F +MQE+ ++P  FTMVSLLNA A +GA +QG WIHEYI +N  
Subjt:  FDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNL

Query:  ELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVI-MLQRWTKTG-------------------------DFFSLMKNTY
        ELN+IVVTA+IDMYCKCG     L VFE  P + LS WNSMI GLA NG E+  + +     ++G                         +FF LMK  Y
Subjt:  ELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVI-MLQRWTKTG-------------------------DFFSLMKNTY

Query:  RIEPS----------------------------------------------------------------------------------------RRISMKM
         IEPS                                                                                        +R+ MK 
Subjt:  RIEPS----------------------------------------------------------------------------------------RRISMKM

Query:  KKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQL
        +++EKE G S IEVD EVH+FI+ GG  HPK+ EIY +L+ L
Subjt:  KKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQL

Arabidopsis top hitse value%identityAlignment
AT1G31430.1 Pentatricopeptide repeat (PPR-like) superfamily protein1.2e-3546.62Show/hide
Query:  DVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLE
        +V  W SM+ G    G IDE+R LF++ PV + +   +M+ GYV+   F EAL+LF  MQ   I+P  F +VSLL   AQ GAL+QG+WIH YI +N + 
Subjt:  DVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLE

Query:  LNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNG
        ++ +V TA++DMY KCG    AL+VF +I  R  + W S+I+GLA+NG
Subjt:  LNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNG

AT2G42920.1 Pentatricopeptide repeat (PPR-like) superfamily protein1.6e-5639.47Show/hide
Query:  FDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNL
        FDVVAWNSMI+G AKCG ID+++ LFD+MP  N +S NSMI G+VRNG FK+AL +F +MQE+ ++P  FTMVSLLNA A +GA +QG WIHEYI +N  
Subjt:  FDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNL

Query:  ELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVI-MLQRWTKTG-------------------------DFFSLMKNTY
        ELN+IVVTA+IDMYCKCG     L VFE  P + LS WNSMI GLA NG E+  + +     ++G                         +FF LMK  Y
Subjt:  ELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVI-MLQRWTKTG-------------------------DFFSLMKNTY

Query:  RIEPS----------------------------------------------------------------------------------------RRISMKM
         IEPS                                                                                        +R+ MK 
Subjt:  RIEPS----------------------------------------------------------------------------------------RRISMKM

Query:  KKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQL
        +++EKE G S IEVD EVH+FI+ GG  HPK+ EIY +L+ L
Subjt:  KKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKAQEIYIVLEQL

AT3G26630.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.8e-3541.94Show/hide
Query:  VVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLEL
        +V+W +M+ GL    ++D +  +F++MP+ N +S  +MI  YV+N    EA +LF +MQ + ++P+EFT+V+LL AS Q+G+L  G W+H+Y  KN   L
Subjt:  VVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLEL

Query:  NTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIML
        +  + TA+IDMY KCGS  +A +VF+ +  + L+ WNSMI  L V+GC +  + L
Subjt:  NTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIML

AT4G18840.1 Pentatricopeptide repeat (PPR-like) superfamily protein4.9e-3442.86Show/hide
Query:  EFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQ-PSEFTMVSLLNASAQIGALKQGEWIHEYIKKN
        E +V +WN MI G A  G + E++++FD MPV + +S N+M+  Y   G + E L++F KM ++  + P  FT+VS+L+A A +G+L QGEW+H YI K+
Subjt:  EFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQ-PSEFTMVSLLNASAQIGALKQGEWIHEYIKKN

Query:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEK
         +E+   + TA++DMY KCG    AL+VF     R +S WNS+I  L+V+G  K
Subjt:  NLELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEK

AT5G66520.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.2e-3342.67Show/hide
Query:  EFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNN
        E D V+WNS+I G  K G++D +  LF KM   N IS  +MI GYV+  M KEAL+LF +MQ   ++P   ++ + L+A AQ+GAL+QG+WIH Y+ K  
Subjt:  EFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNN

Query:  LELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNG
        + +++++   +IDMY KCG    AL+VF+ I  + +  W ++I G A +G
Subjt:  LELNTIVVTAIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTCGATGTCGTTGCCTGGAATTCCATGATTCTGGGTCTGGCTAAATGTGGGGAAATTGATGAGTCGAGGAAGCTGTTCGATAAAATGCCTGTTACAAATCCAAT
CTCTAGGAATTCTATGATTGGCGGGTATGTTAGAAATGGGATGTTCAAAGAAGCGCTGAAGCTGTTTGTCAAAATGCAAGAAGAGAGAATCCAGCCTAGTGAGTTTACTA
TGGTGAGTTTGTTAAATGCTTCAGCTCAAATTGGAGCACTCAAACAAGGGGAATGGATTCATGAATACATAAAGAAGAACAATCTGGAGTTGAATACCATTGTAGTTACA
GCAATCATAGACATGTACTGTAAATGTGGTAGCAAAGGGAATGCCCTCCAAGTGTTTGAGAAAATACCCAACAGAGGATTATCCCGTTGGAACTCCATGATCTTTGGCCT
GGCAGTGAATGGCTGCGAAAAGCTTGTAATCATGTTGCAACGGTGGACGAAGACAGGGGACTTTTTCTCACTGATGAAAAACACATACAGAATTGAACCATCAAGAAGGA
TTTCAATGAAGATGAAAAAGGTGGAGAAAGAACCAGGGGGCAGTCTGATTGAAGTTGATGATGAAGTTCATAAGTTCATAGCTGGTGGTGGGAGATTGCATCCTAAAGCT
CAAGAGATCTACATTGTATTGGAACAATTGGGAATCGGCTCGGCTCGGTTCTCAAGTTTGAGAGAAACAAATTCGGTCAATCCGAACCGTACAGGGTTTTTCGCGAGTGG
CGAGTTCGCTTCCTTCGGCCTTCACTTCCGTCTTCAAAGTCGCAGCGCCAGAGCTCTTCCTCGTTCCTTCTCCTCCGCCCGCCCGGTCGCCCTCGTTCTTTGTTGCTTCT
ACGCCCCTTCTCCCCTTCATTCGCCGTCGTCCCACGTCTACTCGGATCAGACTTCAGCCGCCGTCGCCTCAGAATTTTTACTTTCTTGCCTCAGCCGACAGCCGCCGATA
GCTCGATTCCCGGTATTTTTGAAGTTGAATCAAAGAAACAACAAAGGAAGTGAAGCTAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATTCGATGTCGTTGCCTGGAATTCCATGATTCTGGGTCTGGCTAAATGTGGGGAAATTGATGAGTCGAGGAAGCTGTTCGATAAAATGCCTGTTACAAATCCAAT
CTCTAGGAATTCTATGATTGGCGGGTATGTTAGAAATGGGATGTTCAAAGAAGCGCTGAAGCTGTTTGTCAAAATGCAAGAAGAGAGAATCCAGCCTAGTGAGTTTACTA
TGGTGAGTTTGTTAAATGCTTCAGCTCAAATTGGAGCACTCAAACAAGGGGAATGGATTCATGAATACATAAAGAAGAACAATCTGGAGTTGAATACCATTGTAGTTACA
GCAATCATAGACATGTACTGTAAATGTGGTAGCAAAGGGAATGCCCTCCAAGTGTTTGAGAAAATACCCAACAGAGGATTATCCCGTTGGAACTCCATGATCTTTGGCCT
GGCAGTGAATGGCTGCGAAAAGCTTGTAATCATGTTGCAACGGTGGACGAAGACAGGGGACTTTTTCTCACTGATGAAAAACACATACAGAATTGAACCATCAAGAAGGA
TTTCAATGAAGATGAAAAAGGTGGAGAAAGAACCAGGGGGCAGTCTGATTGAAGTTGATGATGAAGTTCATAAGTTCATAGCTGGTGGTGGGAGATTGCATCCTAAAGCT
CAAGAGATCTACATTGTATTGGAACAATTGGGAATCGGCTCGGCTCGGTTCTCAAGTTTGAGAGAAACAAATTCGGTCAATCCGAACCGTACAGGGTTTTTCGCGAGTGG
CGAGTTCGCTTCCTTCGGCCTTCACTTCCGTCTTCAAAGTCGCAGCGCCAGAGCTCTTCCTCGTTCCTTCTCCTCCGCCCGCCCGGTCGCCCTCGTTCTTTGTTGCTTCT
ACGCCCCTTCTCCCCTTCATTCGCCGTCGTCCCACGTCTACTCGGATCAGACTTCAGCCGCCGTCGCCTCAGAATTTTTACTTTCTTGCCTCAGCCGACAGCCGCCGATA
GCTCGATTCCCGGTATTTTTGAAGTTGAATCAAAGAAACAACAAAGGAAGTGAAGCTAAGTAG
Protein sequenceShow/hide protein sequence
MEFDVVAWNSMILGLAKCGEIDESRKLFDKMPVTNPISRNSMIGGYVRNGMFKEALKLFVKMQEERIQPSEFTMVSLLNASAQIGALKQGEWIHEYIKKNNLELNTIVVT
AIIDMYCKCGSKGNALQVFEKIPNRGLSRWNSMIFGLAVNGCEKLVIMLQRWTKTGDFFSLMKNTYRIEPSRRISMKMKKVEKEPGGSLIEVDDEVHKFIAGGGRLHPKA
QEIYIVLEQLGIGSARFSSLRETNSVNPNRTGFFASGEFASFGLHFRLQSRSARALPRSFSSARPVALVLCCFYAPSPLHSPSSHVYSDQTSAAVASEFLLSCLSRQPPI
ARFPVFLKLNQRNNKGSEAK