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Clc09G24570 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G24570
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationClcChr09:37841518..37842593
RNA-Seq ExpressionClc09G24570
SyntenyClc09G24570
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057564.1 Transposon TX1 uncharacterized [Cucumis melo var. makuwa]8.4e-3163.73Show/hide
Query:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMEN
        M+KF +FI  S+L+EIPLSNG+FTWS+EG    RSLLDRFL+++ WD++FA+ R +R+ R  SDH PILLEA +FEWGPSPFRFCNSWL  K C +I+ N
Subjt:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMEN

Query:  SL
        SL
Subjt:  SL

KAA0063413.1 hypothetical protein E6C27_scaffold508G00500 [Cucumis melo var. makuwa]1.9e-3846.84Show/hide
Query:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMEN
        M+KFN FI  + L+E+PLSNG FTWS  GS+  RSL+DRF IS  WDD F N RV RQ    SDHFP++LEA S  WGPSPFRF NSW   K C  +++ 
Subjt:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMEN

Query:  SLDLEVQQGDQNRMVVSRLSMEEIRNA-LKLLGKN--KTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSCVKENYICLIKKKE
        S         +   V  R+  EE  +  +KL G    +  G      EF LK    +K ++L L  +FY+NG+ N+CV+EN++CLI+KKE
Subjt:  SLDLEVQQGDQNRMVVSRLSMEEIRNA-LKLLGKN--KTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSCVKENYICLIKKKE

TYJ98683.1 hypothetical protein E5676_scaffold429G00120 [Cucumis melo var. makuwa]1.9e-3045Show/hide
Query:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMEN
        M++FN  I    + E+PL NGR TWS+EGS   RSLLD F I   WD+   N RV R+  TISDHFP+LLEA S +WGPSPFRF NSWL   EC RI++ 
Subjt:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMEN

Query:  SLDLEVQQGDQNRMVVSRLSME------EIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSC
          ++     D    V+   S        EI  ALK LGKNK+P P+GFTA      G    +S       + K G  + C
Subjt:  SLDLEVQQGDQNRMVVSRLSME------EIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSC

TYK03825.1 exodeoxyribonuclease-like [Cucumis melo var. makuwa]2.6e-3237.44Show/hide
Query:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMEN
        M+ FNK I    LMEIP+ NGR+TW +EG    +SL +RF I+  WDD F N RV+ + R  S+H P+ L+A +  WGPSPFRFCNSWL   +C +++ +
Subjt:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMEN

Query:  SL---------DLEVQQ---------------------------------GDQNRMVVSRLSMEEIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSL
        +L          L V++                                  D+N  +  R+ +EEI N +K LGKNK PGPDGFTAEF +K     K + 
Subjt:  SL---------DLEVQQ---------------------------------GDQNRMVVSRLSMEEIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSL

Query:  LTLLEEFYKNG
         +++E+    G
Subjt:  LTLLEEFYKNG

XP_038904301.1 uncharacterized protein LOC120090656 [Benincasa hispida]7.4e-3546.82Show/hide
Query:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMEN
        M  FNKFI ++ L+E PLSNG+FTWS+EG V  +SLLD FL+SS W+D F N RV RQ RT+SDHFP+ LEA +FEWGPS FRFCNSWL+ KE C+++E 
Subjt:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMEN

Query:  SLDLEVQQGDQNRMVVSRLS--MEEIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKL
        SL     +  +N    + LS  + + ++ALK               ++F +FGK++K+   +LL E  +   L
Subjt:  SLDLEVQQGDQNRMVVSRLS--MEEIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKL

TrEMBL top hitse value%identityAlignment
A0A5A7UR38 Transposon TX1 uncharacterized4.1e-3163.73Show/hide
Query:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMEN
        M+KF +FI  S+L+EIPLSNG+FTWS+EG    RSLLDRFL+++ WD++FA+ R +R+ R  SDH PILLEA +FEWGPSPFRFCNSWL  K C +I+ N
Subjt:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMEN

Query:  SL
        SL
Subjt:  SL

A0A5D3BHE3 Uncharacterized protein9.1e-3145Show/hide
Query:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMEN
        M++FN  I    + E+PL NGR TWS+EGS   RSLLD F I   WD+   N RV R+  TISDHFP+LLEA S +WGPSPFRF NSWL   EC RI++ 
Subjt:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMEN

Query:  SLDLEVQQGDQNRMVVSRLSME------EIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSC
          ++     D    V+   S        EI  ALK LGKNK+P P+GFTA      G    +S       + K G  + C
Subjt:  SLDLEVQQGDQNRMVVSRLSME------EIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSC

A0A5D3BXH7 Exodeoxyribonuclease-like1.3e-3237.44Show/hide
Query:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMEN
        M+ FNK I    LMEIP+ NGR+TW +EG    +SL +RF I+  WDD F N RV+ + R  S+H P+ L+A +  WGPSPFRFCNSWL   +C +++ +
Subjt:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMEN

Query:  SL---------DLEVQQ---------------------------------GDQNRMVVSRLSMEEIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSL
        +L          L V++                                  D+N  +  R+ +EEI N +K LGKNK PGPDGFTAEF +K     K + 
Subjt:  SL---------DLEVQQ---------------------------------GDQNRMVVSRLSMEEIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSL

Query:  LTLLEEFYKNG
         +++E+    G
Subjt:  LTLLEEFYKNG

A0A5D3CIL8 Uncharacterized protein9.1e-3946.84Show/hide
Query:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMEN
        M+KFN FI  + L+E+PLSNG FTWS  GS+  RSL+DRF IS  WDD F N RV RQ    SDHFP++LEA S  WGPSPFRF NSW   K C  +++ 
Subjt:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMEN

Query:  SLDLEVQQGDQNRMVVSRLSMEEIRNA-LKLLGKN--KTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSCVKENYICLIKKKE
        S         +   V  R+  EE  +  +KL G    +  G      EF LK    +K ++L L  +FY+NG+ N+CV+EN++CLI+KKE
Subjt:  SLDLEVQQGDQNRMVVSRLSMEEIRNA-LKLLGKN--KTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSCVKENYICLIKKKE

A0A5D3D1U8 Transposon TX1 uncharacterized2.0e-3036.05Show/hide
Query:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLK-ECCRIME
        M+ FN F+  ++L+EIPL N RFTWS+EG+   R  LDRF+I+  WD  F N R +RQ    SDHFP+LLEA S  WGPSPFRF  +    K E  ++ E
Subjt:  MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLK-ECCRIME

Query:  NSLDLEVQQG---------------------DQNRMVVSRLSMEEIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSCVKEN
        + L +    G                      + + ++++ S  EI+  +  LGK KTPGPDGFT EF +                              
Subjt:  NSLDLEVQQG---------------------DQNRMVVSRLSMEEIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSCVKEN

Query:  YICLIKKKEDATLVKDFRPISLTTSVYNIVAKV
                    ++KDFRPISLTT  Y ++AKV
Subjt:  YICLIKKKEDATLVKDFRPISLTTSVYNIVAKV

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein5.2e-0741.11Show/hide
Query:  EIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKL-NSCVKENYICLIKKKEDATLVKDFRPISLTTSVYNIVAKV
        EI   +  L   K+PGPDGFTAEF+ ++ ++L   LL L +   K G L NS  + + I + K   D T  ++FRPISL     NI AK+
Subjt:  EIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKL-NSCVKENYICLIKKKEDATLVKDFRPISLTTSVYNIVAKV

P08548 LINE-1 reverse transcriptase homolog2.1e-0834.88Show/hide
Query:  FCNSWLDLKECCRIMENSLDLEVQQGDQNRMVVSRLSMEEIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSCVKENYICLI
        + + + +LKE  + +E +  L      +  M+   +S  EI + ++ L K K+PGPDGFT+EF+  F ++L   LL L +   K G L +   E  I LI
Subjt:  FCNSWLDLKECCRIMENSLDLEVQQGDQNRMVVSRLSMEEIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSCVKENYICLI

Query:  KKK-EDATLVKDFRPISLTTSVYNIVAKV
         K  +D T  +++RPISL     NI AK+
Subjt:  KKK-EDATLVKDFRPISLTTSVYNIVAKV

P11369 LINE-1 retrotransposable element ORF2 protein1.2e-0638.83Show/hide
Query:  DQNRMVVSRLSMEEIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSCVKENYICLI-KKKEDATLVKDFRPISLTTSVYNIV
        DQ   + S +S +EI   +  L   K+PGPDGF+AEF+  F + L   L  L  +    G L +   E  I LI K ++D T +++FRPISL     NI 
Subjt:  DQNRMVVSRLSMEEIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSCVKENYICLI-KKKEDATLVKDFRPISLTTSVYNIV

Query:  AKV
        AK+
Subjt:  AKV

P14381 Transposon TX1 uncharacterized 149 kDa protein5.9e-1139.13Show/hide
Query:  LSMEEIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSCVKENYICLIKKKEDATLVKDFRPISLTTSVYNIVAK
        ++++E+  AL+L+  NK+PG DG T EFF  F   L      +L E +K G+L    +   + L+ KK D  L+K++RP+SL ++ Y IVAK
Subjt:  LSMEEIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSCVKENYICLIKKKEDATLVKDFRPISLTTSVYNIVAK

Arabidopsis top hitse value%identityAlignment
AT1G43760.1 DNAse I-like superfamily protein2.0e-0937.62Show/hide
Query:  NRMVVSRLSM----EEIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSCVKENYICLIKKKEDATLVKDFRPISLTTSVYNI
        N  + SRLS     +EI  A+  + +NK PGPD FTAEFF +    +K S +  ++EF++ G L        I LI K      +  FRP+S  T VY I
Subjt:  NRMVVSRLSM----EEIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSCVKENYICLIKKKEDATLVKDFRPISLTTSVYNI

Query:  V
        +
Subjt:  V


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAGTTTAACAAATTCATAGCTGTGTCACAACTGATGGAGATTCCACTTAGCAATGGTAGATTCACTTGGTCTCAAGAAGGAAGTGTTCCACCCCGGTCCCTCTT
GGATAGATTTCTTATATCTAGCATTTGGGATGATACCTTCGCAAATATAAGAGTTACAAGACAGGTGCGCACTATATCTGACCATTTCCCCATTTTGCTAGAAGCCGTAT
CTTTTGAATGGGGTCCCTCCCCATTCAGATTTTGCAACAGTTGGTTAGATTTGAAGGAATGTTGTCGTATCATGGAAAATTCACTCGATTTGGAAGTGCAACAAGGAGAT
CAAAACAGAATGGTTGTTTCTCGATTGTCCATGGAGGAAATTAGAAATGCACTGAAGTTGTTGGGAAAAAACAAAACTCCGGGCCCTGATGGATTTACAGCAGAATTTTT
CCTGAAATTTGGGAAGAAATTAAAGGTCTCTCTCTTGACTTTGTTGGAAGAGTTTTACAAAAATGGAAAGTTAAACTCATGTGTAAAGGAGAACTACATTTGTTTGATCA
AGAAAAAGGAAGACGCCACTTTAGTGAAGGACTTCAGACCAATCAGCCTTACCACTTCAGTTTATAACATTGTAGCTAAGGTGCAACCTAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAGTTTAACAAATTCATAGCTGTGTCACAACTGATGGAGATTCCACTTAGCAATGGTAGATTCACTTGGTCTCAAGAAGGAAGTGTTCCACCCCGGTCCCTCTT
GGATAGATTTCTTATATCTAGCATTTGGGATGATACCTTCGCAAATATAAGAGTTACAAGACAGGTGCGCACTATATCTGACCATTTCCCCATTTTGCTAGAAGCCGTAT
CTTTTGAATGGGGTCCCTCCCCATTCAGATTTTGCAACAGTTGGTTAGATTTGAAGGAATGTTGTCGTATCATGGAAAATTCACTCGATTTGGAAGTGCAACAAGGAGAT
CAAAACAGAATGGTTGTTTCTCGATTGTCCATGGAGGAAATTAGAAATGCACTGAAGTTGTTGGGAAAAAACAAAACTCCGGGCCCTGATGGATTTACAGCAGAATTTTT
CCTGAAATTTGGGAAGAAATTAAAGGTCTCTCTCTTGACTTTGTTGGAAGAGTTTTACAAAAATGGAAAGTTAAACTCATGTGTAAAGGAGAACTACATTTGTTTGATCA
AGAAAAAGGAAGACGCCACTTTAGTGAAGGACTTCAGACCAATCAGCCTTACCACTTCAGTTTATAACATTGTAGCTAAGGTGCAACCTAGTTGA
Protein sequenceShow/hide protein sequence
MKKFNKFIAVSQLMEIPLSNGRFTWSQEGSVPPRSLLDRFLISSIWDDTFANIRVTRQVRTISDHFPILLEAVSFEWGPSPFRFCNSWLDLKECCRIMENSLDLEVQQGD
QNRMVVSRLSMEEIRNALKLLGKNKTPGPDGFTAEFFLKFGKKLKVSLLTLLEEFYKNGKLNSCVKENYICLIKKKEDATLVKDFRPISLTTSVYNIVAKVQPS