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Clc09G24600 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc09G24600
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationClcChr09:37893625..37893984
RNA-Seq ExpressionClc09G24600
SyntenyClc09G24600
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW83277.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]4.9e-2045.22Show/hide
Query:  HDVHMWKR----------KGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELR
        H+ H W +          K          P + D+++K W  +NN+ MSWLIN+M TEI + FL + TA +IW AA ETYSD +NTA+ F+I+G +H+LR
Subjt:  HDVHMWKR----------KGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELR

Query:  QGDMQVTHYCTQLSR
        QG+M VTHY   LSR
Subjt:  QGDMQVTHYCTQLSR

RVW85251.1 Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]3.7e-2043.59Show/hide
Query:  LAQNLISLVTICHDVHMWKRKGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHE
        +   +I++VTIC  VH+ K K      + + P+  +  ++ WK +N+M MSWLINSM  +I E FL F TA  IW+AA ETYS  EN +E F++E  +H+
Subjt:  LAQNLISLVTICHDVHMWKRKGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHE

Query:  LRQGDMQVTHYCTQLSR
         RQG+  VT Y   L+R
Subjt:  LRQGDMQVTHYCTQLSR

XP_019076019.1 PREDICTED: uncharacterized protein LOC109122762 [Vitis vinifera]2.9e-2046.09Show/hide
Query:  HDVHMWKR----------KGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELR
        HD H W +          K          P + D+++K W  +NN+ MSWLIN M TEI + FL + TA +IW AA ETYSD +NTA+ F+I+G +H+LR
Subjt:  HDVHMWKR----------KGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELR

Query:  QGDMQVTHYCTQLSR
        QG+M VTHY   LSR
Subjt:  QGDMQVTHYCTQLSR

XP_024929479.1 uncharacterized protein LOC112491646 [Ziziphus jujuba]1.5e-2158.33Show/hide
Query:  GRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR
        G +SI +KS P     KY+TWK +N+M MSWLINSMTTE+ E FL + TA++IWEAA ETYS  ENT+E FEIE ++H+LRQ D+ VT Y   L+R
Subjt:  GRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR

XP_039020537.1 uncharacterized protein LOC120152380 [Hibiscus syriacus]3.7e-2059.3Show/hide
Query:  PDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR
        P Q D+K+K W ++NNM MSWLINSMT EI E FL +  A KIWEAA ETYS+ ENT E FE+E  +H+ RQGD+ VT Y   L+R
Subjt:  PDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR

TrEMBL top hitse value%identityAlignment
A0A438BTX7 Gag-Pol-p1992.4e-2045.22Show/hide
Query:  HDVHMWKR----------KGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELR
        H+ H W +          K          P + D+++K W  +NN+ MSWLIN+M TEI + FL + TA +IW AA ETYSD +NTA+ F+I+G +H+LR
Subjt:  HDVHMWKR----------KGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELR

Query:  QGDMQVTHYCTQLSR
        QG+M VTHY   LSR
Subjt:  QGDMQVTHYCTQLSR

A0A438C841 Uncharacterized protein2.4e-2045.22Show/hide
Query:  HDVHMWKR----------KGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELR
        H+ H W +          K          P + D+++K W  +NN+ MSWLIN+M TEI + FL + TA +IW AA ETYSD +NTA+ F+I+G +H+LR
Subjt:  HDVHMWKR----------KGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELR

Query:  QGDMQVTHYCTQLSR
        QG+M VTHY   LSR
Subjt:  QGDMQVTHYCTQLSR

A0A438HJB5 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-2045.22Show/hide
Query:  HDVHMWKR----------KGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELR
        H+ H W +          K          P + D+++K W  +NN+ MSWLIN+M TEI + FL + TA +IW AA ETYSD +NTA+ F+I+G +H+LR
Subjt:  HDVHMWKR----------KGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELR

Query:  QGDMQVTHYCTQLSR
        QG+M VTHY   LSR
Subjt:  QGDMQVTHYCTQLSR

A0A438HLC9 Retrovirus-related Pol polyprotein from transposon RE21.8e-2043.59Show/hide
Query:  LAQNLISLVTICHDVHMWKRKGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHE
        +   +I++VTIC  VH+ K K      + + P+  +  ++ WK +N+M MSWLINSM  +I E FL F TA  IW+AA ETYS  EN +E F++E  +H+
Subjt:  LAQNLISLVTICHDVHMWKRKGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHE

Query:  LRQGDMQVTHYCTQLSR
         RQG+  VT Y   L+R
Subjt:  LRQGDMQVTHYCTQLSR

A0A6P6G5K3 uncharacterized protein LOC1124916467.3e-2258.33Show/hide
Query:  GRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR
        G +SI +KS P     KY+TWK +N+M MSWLINSMTTE+ E FL + TA++IWEAA ETYS  ENT+E FEIE ++H+LRQ D+ VT Y   L+R
Subjt:  GRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELRQGDMQVTHYCTQLSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGGCACAAAACCTTATCTCCCTGGTCACAATCTGTCATGATGTTCATATGTGGAAAAGGAAAGGAAGATTATCTATCAAGCAAAAATCTCATCCCGACCAAGTTGA
TCAGAAATACAAGACATGGAAAGCCAAAAATAATATGTTCATGTCATGGCTAATCAACTCCATGACGACAGAGATCAATGAAGGATTTTTATCCTTCTCAACTGCCAGCA
AAATCTGGGAGGCCGCTTGTGAAACCTATTCCGATCAAGAAAACACTGCGGAATCATTTGAAATTGAAGGGAAAATTCATGAACTACGGCAAGGGGATATGCAAGTTACT
CACTACTGCACTCAACTGTCTCGTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGGCACAAAACCTTATCTCCCTGGTCACAATCTGTCATGATGTTCATATGTGGAAAAGGAAAGGAAGATTATCTATCAAGCAAAAATCTCATCCCGACCAAGTTGA
TCAGAAATACAAGACATGGAAAGCCAAAAATAATATGTTCATGTCATGGCTAATCAACTCCATGACGACAGAGATCAATGAAGGATTTTTATCCTTCTCAACTGCCAGCA
AAATCTGGGAGGCCGCTTGTGAAACCTATTCCGATCAAGAAAACACTGCGGAATCATTTGAAATTGAAGGGAAAATTCATGAACTACGGCAAGGGGATATGCAAGTTACT
CACTACTGCACTCAACTGTCTCGTCTTTAG
Protein sequenceShow/hide protein sequence
MLAQNLISLVTICHDVHMWKRKGRLSIKQKSHPDQVDQKYKTWKAKNNMFMSWLINSMTTEINEGFLSFSTASKIWEAACETYSDQENTAESFEIEGKIHELRQGDMQVT
HYCTQLSRL